co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000023: maltose metabolic process	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0019323: pentose catabolic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0005980: glycogen catabolic process	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0090627: plant epidermal cell differentiation	0.00E+00
10	GO:0016118: carotenoid catabolic process	0.00E+00
11	GO:0015717: triose phosphate transport	0.00E+00
12	GO:0015979: photosynthesis	1.28E-17
13	GO:0009735: response to cytokinin	4.36E-15
14	GO:0032544: plastid translation	3.07E-10
15	GO:0009409: response to cold	2.29E-08
16	GO:0006412: translation	3.19E-08
17	GO:0019464: glycine decarboxylation via glycine cleavage system	1.84E-07
18	GO:0042549: photosystem II stabilization	8.17E-07
19	GO:0010027: thylakoid membrane organization	8.54E-07
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.23E-06
21	GO:0010196: nonphotochemical quenching	2.33E-06
22	GO:0042254: ribosome biogenesis	2.98E-06
23	GO:0042742: defense response to bacterium	3.52E-06
24	GO:0005978: glycogen biosynthetic process	3.56E-06
25	GO:0010206: photosystem II repair	7.27E-06
26	GO:0006000: fructose metabolic process	8.14E-06
27	GO:0019252: starch biosynthetic process	9.38E-06
28	GO:0010205: photoinhibition	9.86E-06
29	GO:0009773: photosynthetic electron transport in photosystem I	1.68E-05
30	GO:0005983: starch catabolic process	2.13E-05
31	GO:0010021: amylopectin biosynthetic process	3.41E-05
32	GO:0009768: photosynthesis, light harvesting in photosystem I	6.42E-05
33	GO:0009645: response to low light intensity stimulus	1.47E-04
34	GO:0031998: regulation of fatty acid beta-oxidation	2.18E-04
35	GO:0000025: maltose catabolic process	2.18E-04
36	GO:0043489: RNA stabilization	2.18E-04
37	GO:0044262: cellular carbohydrate metabolic process	2.18E-04
38	GO:0080093: regulation of photorespiration	2.18E-04
39	GO:0006002: fructose 6-phosphate metabolic process	2.33E-04
40	GO:0009658: chloroplast organization	2.55E-04
41	GO:0015995: chlorophyll biosynthetic process	4.29E-04
42	GO:0018119: peptidyl-cysteine S-nitrosylation	4.56E-04
43	GO:0016121: carotene catabolic process	4.86E-04
44	GO:0010270: photosystem II oxygen evolving complex assembly	4.86E-04
45	GO:0035304: regulation of protein dephosphorylation	4.86E-04
46	GO:0009629: response to gravity	4.86E-04
47	GO:0016124: xanthophyll catabolic process	4.86E-04
48	GO:0019388: galactose catabolic process	4.86E-04
49	GO:0005976: polysaccharide metabolic process	4.86E-04
50	GO:0007154: cell communication	4.86E-04
51	GO:0009817: defense response to fungus, incompatible interaction	4.90E-04
52	GO:0018298: protein-chromophore linkage	4.90E-04
53	GO:0006094: gluconeogenesis	5.92E-04
54	GO:0005986: sucrose biosynthetic process	5.92E-04
55	GO:0010207: photosystem II assembly	6.66E-04
56	GO:0019253: reductive pentose-phosphate cycle	6.66E-04
57	GO:0048281: inflorescence morphogenesis	7.90E-04
58	GO:0006518: peptide metabolic process	7.90E-04
59	GO:0035436: triose phosphate transmembrane transport	7.90E-04
60	GO:0090153: regulation of sphingolipid biosynthetic process	7.90E-04
61	GO:0016050: vesicle organization	7.90E-04
62	GO:0010025: wax biosynthetic process	8.29E-04
63	GO:0006289: nucleotide-excision repair	9.15E-04
64	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.13E-03
65	GO:1902358: sulfate transmembrane transport	1.13E-03
66	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.13E-03
67	GO:0010148: transpiration	1.13E-03
68	GO:0010731: protein glutathionylation	1.13E-03
69	GO:0006424: glutamyl-tRNA aminoacylation	1.13E-03
70	GO:0009590: detection of gravity	1.13E-03
71	GO:0015976: carbon utilization	1.50E-03
72	GO:0009765: photosynthesis, light harvesting	1.50E-03
73	GO:0006109: regulation of carbohydrate metabolic process	1.50E-03
74	GO:0045727: positive regulation of translation	1.50E-03
75	GO:2000122: negative regulation of stomatal complex development	1.50E-03
76	GO:0010600: regulation of auxin biosynthetic process	1.50E-03
77	GO:0006546: glycine catabolic process	1.50E-03
78	GO:0015713: phosphoglycerate transport	1.50E-03
79	GO:0010037: response to carbon dioxide	1.50E-03
80	GO:0046686: response to cadmium ion	1.51E-03
81	GO:0006461: protein complex assembly	1.91E-03
82	GO:0016120: carotene biosynthetic process	1.91E-03
83	GO:0006544: glycine metabolic process	1.91E-03
84	GO:0032543: mitochondrial translation	1.91E-03
85	GO:0006097: glyoxylate cycle	1.91E-03
86	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.35E-03
87	GO:0000470: maturation of LSU-rRNA	2.35E-03
88	GO:0009913: epidermal cell differentiation	2.35E-03
89	GO:0006828: manganese ion transport	2.35E-03
90	GO:0009643: photosynthetic acclimation	2.35E-03
91	GO:0006563: L-serine metabolic process	2.35E-03
92	GO:0030163: protein catabolic process	2.50E-03
93	GO:0045454: cell redox homeostasis	2.55E-03
94	GO:0009955: adaxial/abaxial pattern specification	2.83E-03
95	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.83E-03
96	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.83E-03
97	GO:1901259: chloroplast rRNA processing	2.83E-03
98	GO:0010161: red light signaling pathway	3.33E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	3.33E-03
100	GO:0070370: cellular heat acclimation	3.33E-03
101	GO:0008272: sulfate transport	3.33E-03
102	GO:0010103: stomatal complex morphogenesis	3.33E-03
103	GO:0055114: oxidation-reduction process	3.77E-03
104	GO:0048564: photosystem I assembly	3.86E-03
105	GO:0010928: regulation of auxin mediated signaling pathway	3.86E-03
106	GO:0009704: de-etiolation	3.86E-03
107	GO:0001558: regulation of cell growth	4.42E-03
108	GO:0009657: plastid organization	4.42E-03
109	GO:0005975: carbohydrate metabolic process	4.69E-03
110	GO:0006783: heme biosynthetic process	5.00E-03
111	GO:0009853: photorespiration	5.22E-03
112	GO:0034599: cellular response to oxidative stress	5.46E-03
113	GO:0005982: starch metabolic process	5.62E-03
114	GO:0035999: tetrahydrofolate interconversion	5.62E-03
115	GO:0042761: very long-chain fatty acid biosynthetic process	5.62E-03
116	GO:0006782: protoporphyrinogen IX biosynthetic process	6.25E-03
117	GO:0048829: root cap development	6.25E-03
118	GO:0006816: calcium ion transport	6.91E-03
119	GO:0019684: photosynthesis, light reaction	6.91E-03
120	GO:0072593: reactive oxygen species metabolic process	6.91E-03
121	GO:0043085: positive regulation of catalytic activity	6.91E-03
122	GO:0006415: translational termination	6.91E-03
123	GO:0009750: response to fructose	6.91E-03
124	GO:0016485: protein processing	6.91E-03
125	GO:0009644: response to high light intensity	7.28E-03
126	GO:0006979: response to oxidative stress	7.31E-03
127	GO:0045037: protein import into chloroplast stroma	7.60E-03
128	GO:0009767: photosynthetic electron transport chain	8.30E-03
129	GO:0010102: lateral root morphogenesis	8.30E-03
130	GO:0010628: positive regulation of gene expression	8.30E-03
131	GO:0006108: malate metabolic process	8.30E-03
132	GO:0006006: glucose metabolic process	8.30E-03
133	GO:0009266: response to temperature stimulus	9.03E-03
134	GO:0010020: chloroplast fission	9.03E-03
135	GO:0005985: sucrose metabolic process	9.79E-03
136	GO:0006636: unsaturated fatty acid biosynthetic process	1.06E-02
137	GO:0009944: polarity specification of adaxial/abaxial axis	1.14E-02
138	GO:0000027: ribosomal large subunit assembly	1.14E-02
139	GO:0051302: regulation of cell division	1.22E-02
140	GO:0007017: microtubule-based process	1.22E-02
141	GO:0009624: response to nematode	1.30E-02
142	GO:0030245: cellulose catabolic process	1.39E-02
143	GO:0010017: red or far-red light signaling pathway	1.39E-02
144	GO:0016226: iron-sulfur cluster assembly	1.39E-02
145	GO:0006810: transport	1.40E-02
146	GO:0001944: vasculature development	1.48E-02
147	GO:0006284: base-excision repair	1.57E-02
148	GO:0016117: carotenoid biosynthetic process	1.66E-02
149	GO:0042335: cuticle development	1.75E-02
150	GO:0008152: metabolic process	1.75E-02
151	GO:0000413: protein peptidyl-prolyl isomerization	1.75E-02
152	GO:0006662: glycerol ether metabolic process	1.85E-02
153	GO:0048868: pollen tube development	1.85E-02
154	GO:0009790: embryo development	1.90E-02
155	GO:0015986: ATP synthesis coupled proton transport	1.95E-02
156	GO:0048825: cotyledon development	2.05E-02
157	GO:0000302: response to reactive oxygen species	2.15E-02
158	GO:0007623: circadian rhythm	2.25E-02
159	GO:0016311: dephosphorylation	3.25E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	3.62E-02
161	GO:0010218: response to far red light	3.62E-02
162	GO:0010119: regulation of stomatal movement	3.74E-02
163	GO:0009631: cold acclimation	3.74E-02
164	GO:0009637: response to blue light	3.99E-02
165	GO:0045087: innate immune response	3.99E-02
166	GO:0006099: tricarboxylic acid cycle	4.12E-02
167	GO:0080167: response to karrikin	4.30E-02
168	GO:0010114: response to red light	4.78E-02
169	GO:0006508: proteolysis	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0008184: glycogen phosphorylase activity	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0004645: phosphorylase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0016166: phytoene dehydrogenase activity	0.00E+00
10	GO:0019843: rRNA binding	1.86E-16
11	GO:0003735: structural constituent of ribosome	2.77E-10
12	GO:0008266: poly(U) RNA binding	8.47E-09
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.23E-06
14	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.87E-05
15	GO:0016168: chlorophyll binding	2.63E-05
16	GO:0031409: pigment binding	4.66E-05
17	GO:0004222: metalloendopeptidase activity	4.84E-05
18	GO:0051920: peroxiredoxin activity	1.11E-04
19	GO:0016209: antioxidant activity	1.88E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.18E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.18E-04
22	GO:0004856: xylulokinase activity	2.18E-04
23	GO:0009496: plastoquinol--plastocyanin reductase activity	2.18E-04
24	GO:0010242: oxygen evolving activity	2.18E-04
25	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.18E-04
26	GO:0004134: 4-alpha-glucanotransferase activity	2.18E-04
27	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.18E-04
28	GO:0004853: uroporphyrinogen decarboxylase activity	2.18E-04
29	GO:0045485: omega-6 fatty acid desaturase activity	2.18E-04
30	GO:0008158: hedgehog receptor activity	2.18E-04
31	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.18E-04
32	GO:0004618: phosphoglycerate kinase activity	4.86E-04
33	GO:0010297: heteropolysaccharide binding	4.86E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	4.86E-04
35	GO:0004750: ribulose-phosphate 3-epimerase activity	4.86E-04
36	GO:0018708: thiol S-methyltransferase activity	4.86E-04
37	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.86E-04
38	GO:0004614: phosphoglucomutase activity	4.86E-04
39	GO:0008967: phosphoglycolate phosphatase activity	4.86E-04
40	GO:0071917: triose-phosphate transmembrane transporter activity	7.90E-04
41	GO:0004324: ferredoxin-NADP+ reductase activity	7.90E-04
42	GO:0043169: cation binding	7.90E-04
43	GO:0004373: glycogen (starch) synthase activity	7.90E-04
44	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	7.90E-04
45	GO:0004148: dihydrolipoyl dehydrogenase activity	7.90E-04
46	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.90E-04
47	GO:0016491: oxidoreductase activity	1.05E-03
48	GO:0016149: translation release factor activity, codon specific	1.13E-03
49	GO:0016851: magnesium chelatase activity	1.13E-03
50	GO:0043023: ribosomal large subunit binding	1.13E-03
51	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.50E-03
52	GO:0019104: DNA N-glycosylase activity	1.50E-03
53	GO:0009011: starch synthase activity	1.50E-03
54	GO:0019199: transmembrane receptor protein kinase activity	1.50E-03
55	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.50E-03
56	GO:0042277: peptide binding	1.50E-03
57	GO:0015120: phosphoglycerate transmembrane transporter activity	1.50E-03
58	GO:0004372: glycine hydroxymethyltransferase activity	1.91E-03
59	GO:0003959: NADPH dehydrogenase activity	1.91E-03
60	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.91E-03
61	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.91E-03
62	GO:0050662: coenzyme binding	1.92E-03
63	GO:0048038: quinone binding	2.20E-03
64	GO:2001070: starch binding	2.35E-03
65	GO:0004130: cytochrome-c peroxidase activity	2.35E-03
66	GO:0016615: malate dehydrogenase activity	2.35E-03
67	GO:0008237: metallopeptidase activity	2.82E-03
68	GO:0030060: L-malate dehydrogenase activity	2.83E-03
69	GO:0004602: glutathione peroxidase activity	2.83E-03
70	GO:0030170: pyridoxal phosphate binding	3.11E-03
71	GO:0008236: serine-type peptidase activity	3.92E-03
72	GO:0008271: secondary active sulfate transmembrane transporter activity	4.42E-03
73	GO:0015078: hydrogen ion transmembrane transporter activity	4.42E-03
74	GO:0003747: translation release factor activity	5.00E-03
75	GO:0005384: manganese ion transmembrane transporter activity	5.62E-03
76	GO:0008047: enzyme activator activity	6.25E-03
77	GO:0015386: potassium:proton antiporter activity	6.91E-03
78	GO:0004601: peroxidase activity	7.15E-03
79	GO:0015116: sulfate transmembrane transporter activity	7.60E-03
80	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.86E-03
81	GO:0015095: magnesium ion transmembrane transporter activity	8.30E-03
82	GO:0004022: alcohol dehydrogenase (NAD) activity	8.30E-03
83	GO:0004089: carbonate dehydratase activity	8.30E-03
84	GO:0051536: iron-sulfur cluster binding	1.14E-02
85	GO:0004857: enzyme inhibitor activity	1.14E-02
86	GO:0005528: FK506 binding	1.14E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.22E-02
88	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.27E-02
89	GO:0004176: ATP-dependent peptidase activity	1.30E-02
90	GO:0022891: substrate-specific transmembrane transporter activity	1.48E-02
91	GO:0008810: cellulase activity	1.48E-02
92	GO:0047134: protein-disulfide reductase activity	1.66E-02
93	GO:0004252: serine-type endopeptidase activity	1.80E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.36E-02
96	GO:0003684: damaged DNA binding	2.46E-02
97	GO:0005200: structural constituent of cytoskeleton	2.57E-02
98	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.85E-02
99	GO:0016788: hydrolase activity, acting on ester bonds	3.54E-02
100	GO:0003746: translation elongation factor activity	3.99E-02
101	GO:0008233: peptidase activity	4.22E-02
102	GO:0003729: mRNA binding	4.31E-02
103	GO:0004364: glutathione transferase activity	4.65E-02
104	GO:0046872: metal ion binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	2.33E-78
4	GO:0009941: chloroplast envelope	1.25E-66
5	GO:0009534: chloroplast thylakoid	2.60E-53
6	GO:0009570: chloroplast stroma	2.87E-53
7	GO:0009535: chloroplast thylakoid membrane	1.07E-44
8	GO:0009579: thylakoid	7.69E-43
9	GO:0010287: plastoglobule	5.60E-15
10	GO:0009543: chloroplast thylakoid lumen	2.99E-13
11	GO:0031977: thylakoid lumen	3.37E-12
12	GO:0010319: stromule	4.69E-12
13	GO:0005840: ribosome	4.39E-10
14	GO:0009706: chloroplast inner membrane	3.37E-09
15	GO:0048046: apoplast	1.88E-08
16	GO:0016020: membrane	1.93E-07
17	GO:0009523: photosystem II	2.53E-07
18	GO:0030095: chloroplast photosystem II	6.63E-07
19	GO:0009533: chloroplast stromal thylakoid	2.33E-06
20	GO:0009538: photosystem I reaction center	3.56E-06
21	GO:0005960: glycine cleavage complex	1.87E-05
22	GO:0009508: plastid chromosome	2.64E-05
23	GO:0030076: light-harvesting complex	3.90E-05
24	GO:0009654: photosystem II oxygen evolving complex	6.42E-05
25	GO:0009522: photosystem I	1.73E-04
26	GO:0009501: amyloplast	1.88E-04
27	GO:0019898: extrinsic component of membrane	1.91E-04
28	GO:0009782: photosystem I antenna complex	2.18E-04
29	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.18E-04
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.82E-04
31	GO:0009295: nucleoid	2.97E-04
32	GO:0031969: chloroplast membrane	3.83E-04
33	GO:0030093: chloroplast photosystem I	4.86E-04
34	GO:0000311: plastid large ribosomal subunit	5.22E-04
35	GO:0010007: magnesium chelatase complex	7.90E-04
36	GO:0009509: chromoplast	7.90E-04
37	GO:0009536: plastid	8.97E-04
38	GO:0042651: thylakoid membrane	1.01E-03
39	GO:0009517: PSII associated light-harvesting complex II	1.50E-03
40	GO:0055035: plastid thylakoid membrane	1.91E-03
41	GO:0009512: cytochrome b6f complex	1.91E-03
42	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.35E-03
43	GO:0005763: mitochondrial small ribosomal subunit	5.00E-03
44	GO:0042644: chloroplast nucleoid	5.00E-03
45	GO:0045298: tubulin complex	5.00E-03
46	GO:0000312: plastid small ribosomal subunit	9.03E-03
47	GO:0022625: cytosolic large ribosomal subunit	1.00E-02
48	GO:0015935: small ribosomal subunit	1.30E-02
49	GO:0005759: mitochondrial matrix	2.04E-02
50	GO:0030529: intracellular ribonucleoprotein complex	2.79E-02
51	GO:0022626: cytosolic ribosome	3.00E-02
52	GO:0015934: large ribosomal subunit	3.74E-02