co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:0015979: photosynthesis	8.88E-15
8	GO:0009773: photosynthetic electron transport in photosystem I	5.96E-10
9	GO:0009768: photosynthesis, light harvesting in photosystem I	5.63E-07
10	GO:0010206: photosystem II repair	2.92E-06
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.63E-06
12	GO:0018298: protein-chromophore linkage	1.40E-05
13	GO:0042549: photosystem II stabilization	4.37E-05
14	GO:0010196: nonphotochemical quenching	8.22E-05
15	GO:0043953: protein transport by the Tat complex	1.50E-04
16	GO:0065002: intracellular protein transmembrane transport	1.50E-04
17	GO:0080093: regulation of photorespiration	1.50E-04
18	GO:0043007: maintenance of rDNA	1.50E-04
19	GO:0031998: regulation of fatty acid beta-oxidation	1.50E-04
20	GO:0010027: thylakoid membrane organization	1.70E-04
21	GO:0031648: protein destabilization	3.42E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.42E-04
23	GO:0051262: protein tetramerization	3.42E-04
24	GO:0006094: gluconeogenesis	3.54E-04
25	GO:0009644: response to high light intensity	5.19E-04
26	GO:0006000: fructose metabolic process	5.61E-04
27	GO:0090391: granum assembly	5.61E-04
28	GO:0035436: triose phosphate transmembrane transport	5.61E-04
29	GO:1902448: positive regulation of shade avoidance	5.61E-04
30	GO:0010017: red or far-red light signaling pathway	7.29E-04
31	GO:0042823: pyridoxal phosphate biosynthetic process	8.03E-04
32	GO:0071484: cellular response to light intensity	8.03E-04
33	GO:0010600: regulation of auxin biosynthetic process	1.06E-03
34	GO:0015713: phosphoglycerate transport	1.06E-03
35	GO:0010021: amylopectin biosynthetic process	1.06E-03
36	GO:0015976: carbon utilization	1.06E-03
37	GO:0010023: proanthocyanidin biosynthetic process	1.06E-03
38	GO:0009765: photosynthesis, light harvesting	1.06E-03
39	GO:0006109: regulation of carbohydrate metabolic process	1.06E-03
40	GO:0045727: positive regulation of translation	1.06E-03
41	GO:0015994: chlorophyll metabolic process	1.06E-03
42	GO:0045454: cell redox homeostasis	1.14E-03
43	GO:0006097: glyoxylate cycle	1.35E-03
44	GO:0009643: photosynthetic acclimation	1.65E-03
45	GO:0009635: response to herbicide	1.65E-03
46	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.98E-03
47	GO:0009769: photosynthesis, light harvesting in photosystem II	2.33E-03
48	GO:1900057: positive regulation of leaf senescence	2.33E-03
49	GO:0009645: response to low light intensity stimulus	2.33E-03
50	GO:0010161: red light signaling pathway	2.33E-03
51	GO:0071446: cellular response to salicylic acid stimulus	2.33E-03
52	GO:0005978: glycogen biosynthetic process	2.70E-03
53	GO:0009642: response to light intensity	2.70E-03
54	GO:0009704: de-etiolation	2.70E-03
55	GO:0010218: response to far red light	2.70E-03
56	GO:0009231: riboflavin biosynthetic process	2.70E-03
57	GO:0010928: regulation of auxin mediated signaling pathway	2.70E-03
58	GO:0032544: plastid translation	3.08E-03
59	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.08E-03
60	GO:0006002: fructose 6-phosphate metabolic process	3.08E-03
61	GO:0009637: response to blue light	3.09E-03
62	GO:0009735: response to cytokinin	3.26E-03
63	GO:0051865: protein autoubiquitination	3.49E-03
64	GO:0042761: very long-chain fatty acid biosynthetic process	3.91E-03
65	GO:0005982: starch metabolic process	3.91E-03
66	GO:0010205: photoinhibition	3.91E-03
67	GO:0010114: response to red light	3.98E-03
68	GO:0048829: root cap development	4.35E-03
69	GO:0031627: telomeric loop formation	4.35E-03
70	GO:0019684: photosynthesis, light reaction	4.80E-03
71	GO:0009073: aromatic amino acid family biosynthetic process	4.80E-03
72	GO:0043085: positive regulation of catalytic activity	4.80E-03
73	GO:0000272: polysaccharide catabolic process	4.80E-03
74	GO:0018119: peptidyl-cysteine S-nitrosylation	4.80E-03
75	GO:0009409: response to cold	4.83E-03
76	GO:0010582: floral meristem determinacy	5.27E-03
77	GO:0006810: transport	5.56E-03
78	GO:0010628: positive regulation of gene expression	5.75E-03
79	GO:0006108: malate metabolic process	5.75E-03
80	GO:0009718: anthocyanin-containing compound biosynthetic process	5.75E-03
81	GO:0005986: sucrose biosynthetic process	5.75E-03
82	GO:0019253: reductive pentose-phosphate cycle	6.25E-03
83	GO:0010207: photosystem II assembly	6.25E-03
84	GO:0009266: response to temperature stimulus	6.25E-03
85	GO:0009934: regulation of meristem structural organization	6.25E-03
86	GO:0006302: double-strand break repair	6.25E-03
87	GO:0043086: negative regulation of catalytic activity	6.32E-03
88	GO:0005985: sucrose metabolic process	6.77E-03
89	GO:0090351: seedling development	6.77E-03
90	GO:0010025: wax biosynthetic process	7.30E-03
91	GO:0007017: microtubule-based process	8.40E-03
92	GO:0051321: meiotic cell cycle	8.97E-03
93	GO:0019915: lipid storage	8.97E-03
94	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.56E-03
95	GO:0009561: megagametogenesis	1.08E-02
96	GO:0042631: cellular response to water deprivation	1.20E-02
97	GO:0006662: glycerol ether metabolic process	1.27E-02
98	GO:0007623: circadian rhythm	1.32E-02
99	GO:0006814: sodium ion transport	1.34E-02
100	GO:0019252: starch biosynthetic process	1.41E-02
101	GO:0071554: cell wall organization or biogenesis	1.47E-02
102	GO:0006310: DNA recombination	1.69E-02
103	GO:0009567: double fertilization forming a zygote and endosperm	1.69E-02
104	GO:0009911: positive regulation of flower development	1.92E-02
105	GO:0045893: positive regulation of transcription, DNA-templated	1.94E-02
106	GO:0048573: photoperiodism, flowering	2.15E-02
107	GO:0006970: response to osmotic stress	2.20E-02
108	GO:0016311: dephosphorylation	2.23E-02
109	GO:0009723: response to ethylene	2.37E-02
110	GO:0000160: phosphorelay signal transduction system	2.40E-02
111	GO:0009834: plant-type secondary cell wall biogenesis	2.48E-02
112	GO:0080167: response to karrikin	2.54E-02
113	GO:0009631: cold acclimation	2.56E-02
114	GO:0010119: regulation of stomatal movement	2.56E-02
115	GO:0034599: cellular response to oxidative stress	2.83E-02
116	GO:0006099: tricarboxylic acid cycle	2.83E-02
117	GO:0009640: photomorphogenesis	3.28E-02
118	GO:0006281: DNA repair	3.74E-02
119	GO:0000165: MAPK cascade	3.76E-02
120	GO:0031347: regulation of defense response	3.76E-02
121	GO:0042742: defense response to bacterium	3.93E-02
122	GO:0006364: rRNA processing	4.05E-02
123	GO:0006486: protein glycosylation	4.05E-02
124	GO:0009585: red, far-red light phototransduction	4.05E-02
125	GO:0006096: glycolytic process	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0031409: pigment binding	3.47E-07
4	GO:0016168: chlorophyll binding	8.96E-06
5	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.80E-05
6	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	1.50E-04
7	GO:0005227: calcium activated cation channel activity	1.50E-04
8	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.42E-04
9	GO:0047746: chlorophyllase activity	3.42E-04
10	GO:0010297: heteropolysaccharide binding	3.42E-04
11	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.42E-04
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.42E-04
13	GO:0031072: heat shock protein binding	3.54E-04
14	GO:0004857: enzyme inhibitor activity	5.53E-04
15	GO:0071917: triose-phosphate transmembrane transporter activity	5.61E-04
16	GO:0043169: cation binding	5.61E-04
17	GO:0015120: phosphoglycerate transmembrane transporter activity	1.06E-03
18	GO:0080032: methyl jasmonate esterase activity	1.06E-03
19	GO:0015035: protein disulfide oxidoreductase activity	1.10E-03
20	GO:0048038: quinone binding	1.31E-03
21	GO:0016615: malate dehydrogenase activity	1.65E-03
22	GO:0080030: methyl indole-3-acetate esterase activity	1.65E-03
23	GO:0004332: fructose-bisphosphate aldolase activity	1.65E-03
24	GO:0009055: electron carrier activity	1.74E-03
25	GO:0030060: L-malate dehydrogenase activity	1.98E-03
26	GO:0005261: cation channel activity	1.98E-03
27	GO:0004033: aldo-keto reductase (NADP) activity	2.70E-03
28	GO:0030145: manganese ion binding	2.82E-03
29	GO:0043621: protein self-association	4.30E-03
30	GO:0008047: enzyme activator activity	4.35E-03
31	GO:0003691: double-stranded telomeric DNA binding	4.80E-03
32	GO:0008378: galactosyltransferase activity	5.27E-03
33	GO:0004565: beta-galactosidase activity	5.75E-03
34	GO:0005315: inorganic phosphate transmembrane transporter activity	5.75E-03
35	GO:0004089: carbonate dehydratase activity	5.75E-03
36	GO:0008266: poly(U) RNA binding	6.25E-03
37	GO:0003712: transcription cofactor activity	6.77E-03
38	GO:0051082: unfolded protein binding	7.61E-03
39	GO:0033612: receptor serine/threonine kinase binding	8.97E-03
40	GO:0008408: 3'-5' exonuclease activity	8.97E-03
41	GO:0019843: rRNA binding	9.54E-03
42	GO:0003756: protein disulfide isomerase activity	1.08E-02
43	GO:0008514: organic anion transmembrane transporter activity	1.08E-02
44	GO:0047134: protein-disulfide reductase activity	1.14E-02
45	GO:0050662: coenzyme binding	1.34E-02
46	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-02
47	GO:0000156: phosphorelay response regulator activity	1.62E-02
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
49	GO:0042802: identical protein binding	1.68E-02
50	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.76E-02
51	GO:0005200: structural constituent of cytoskeleton	1.76E-02
52	GO:0016413: O-acetyltransferase activity	1.84E-02
53	GO:0005515: protein binding	2.45E-02
54	GO:0003993: acid phosphatase activity	2.83E-02
55	GO:0016787: hydrolase activity	3.38E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	3.47E-02
57	GO:0005509: calcium ion binding	3.56E-02
58	GO:0005198: structural molecule activity	3.56E-02
59	GO:0015293: symporter activity	3.56E-02
60	GO:0003824: catalytic activity	4.41E-02
61	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009535: chloroplast thylakoid membrane	3.51E-31
5	GO:0009534: chloroplast thylakoid	1.20E-29
6	GO:0009507: chloroplast	1.13E-19
7	GO:0009579: thylakoid	1.25E-14
8	GO:0010287: plastoglobule	2.17E-11
9	GO:0009941: chloroplast envelope	2.66E-11
10	GO:0030095: chloroplast photosystem II	1.98E-09
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-08
12	GO:0009543: chloroplast thylakoid lumen	7.84E-07
13	GO:0009570: chloroplast stroma	1.15E-06
14	GO:0009538: photosystem I reaction center	1.41E-06
15	GO:0009522: photosystem I	2.60E-06
16	GO:0009523: photosystem II	3.05E-06
17	GO:0030076: light-harvesting complex	1.67E-05
18	GO:0009654: photosystem II oxygen evolving complex	2.82E-05
19	GO:0031977: thylakoid lumen	3.22E-05
20	GO:0019898: extrinsic component of membrane	8.98E-05
21	GO:0000791: euchromatin	1.50E-04
22	GO:0009783: photosystem II antenna complex	1.50E-04
23	GO:0009515: granal stacked thylakoid	1.50E-04
24	GO:0031361: integral component of thylakoid membrane	1.50E-04
25	GO:0030870: Mre11 complex	3.42E-04
26	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.42E-04
27	GO:0033281: TAT protein transport complex	5.61E-04
28	GO:0042651: thylakoid membrane	6.09E-04
29	GO:0030915: Smc5-Smc6 complex	1.35E-03
30	GO:0000795: synaptonemal complex	1.35E-03
31	GO:0010319: stromule	1.68E-03
32	GO:0009533: chloroplast stromal thylakoid	2.33E-03
33	GO:0009501: amyloplast	2.70E-03
34	GO:0048046: apoplast	2.98E-03
35	GO:0000783: nuclear telomere cap complex	3.08E-03
36	GO:0045298: tubulin complex	3.49E-03
37	GO:0008180: COP9 signalosome	3.49E-03
38	GO:0016021: integral component of membrane	8.53E-03
39	GO:0015935: small ribosomal subunit	8.97E-03
40	GO:0000785: chromatin	1.55E-02
41	GO:0019005: SCF ubiquitin ligase complex	2.31E-02
42	GO:0000325: plant-type vacuole	2.56E-02
43	GO:0000502: proteasome complex	4.05E-02
44	GO:0005840: ribosome	4.17E-02
45	GO:0005834: heterotrimeric G-protein complex	4.78E-02