co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0048870: cell motility	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0009240: isopentenyl diphosphate biosynthetic process	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
7	GO:0036172: thiamine salvage	0.00E+00
8	GO:0032928: regulation of superoxide anion generation	0.00E+00
9	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.07E-08
10	GO:0019509: L-methionine salvage from methylthioadenosine	3.96E-06
11	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.77E-06
12	GO:0006516: glycoprotein catabolic process	3.75E-05
13	GO:0006555: methionine metabolic process	1.52E-04
14	GO:0033365: protein localization to organelle	1.52E-04
15	GO:0016226: iron-sulfur cluster assembly	1.96E-04
16	GO:0048438: floral whorl development	3.24E-04
17	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.24E-04
18	GO:0006567: threonine catabolic process	3.24E-04
19	GO:0016031: tRNA import into mitochondrion	3.24E-04
20	GO:0031468: nuclear envelope reassembly	3.24E-04
21	GO:0015996: chlorophyll catabolic process	4.17E-04
22	GO:0055114: oxidation-reduction process	5.36E-04
23	GO:0016122: xanthophyll metabolic process	7.07E-04
24	GO:2000030: regulation of response to red or far red light	7.07E-04
25	GO:0007163: establishment or maintenance of cell polarity	7.07E-04
26	GO:2000071: regulation of defense response by callose deposition	7.07E-04
27	GO:0006432: phenylalanyl-tRNA aminoacylation	7.07E-04
28	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.07E-04
29	GO:0010220: positive regulation of vernalization response	7.07E-04
30	GO:0019441: tryptophan catabolic process to kynurenine	7.07E-04
31	GO:0080183: response to photooxidative stress	7.07E-04
32	GO:0010476: gibberellin mediated signaling pathway	1.15E-03
33	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.15E-03
34	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.15E-03
35	GO:1901562: response to paraquat	1.15E-03
36	GO:0071492: cellular response to UV-A	1.15E-03
37	GO:0006760: folic acid-containing compound metabolic process	1.15E-03
38	GO:0048527: lateral root development	1.20E-03
39	GO:0009853: photorespiration	1.35E-03
40	GO:0006107: oxaloacetate metabolic process	1.65E-03
41	GO:0009399: nitrogen fixation	1.65E-03
42	GO:0009647: skotomorphogenesis	1.65E-03
43	GO:0009963: positive regulation of flavonoid biosynthetic process	1.65E-03
44	GO:0008299: isoprenoid biosynthetic process	1.76E-03
45	GO:0070534: protein K63-linked ubiquitination	2.21E-03
46	GO:0006545: glycine biosynthetic process	2.21E-03
47	GO:0071486: cellular response to high light intensity	2.21E-03
48	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.21E-03
49	GO:0009765: photosynthesis, light harvesting	2.21E-03
50	GO:0071249: cellular response to nitrate	2.21E-03
51	GO:0006221: pyrimidine nucleotide biosynthetic process	2.21E-03
52	GO:0009649: entrainment of circadian clock	2.21E-03
53	GO:0000003: reproduction	2.21E-03
54	GO:0034613: cellular protein localization	2.21E-03
55	GO:0006542: glutamine biosynthetic process	2.21E-03
56	GO:0006012: galactose metabolic process	2.30E-03
57	GO:0008152: metabolic process	2.53E-03
58	GO:0009229: thiamine diphosphate biosynthetic process	2.82E-03
59	GO:0018344: protein geranylgeranylation	2.82E-03
60	GO:0030041: actin filament polymerization	2.82E-03
61	GO:0010117: photoprotection	2.82E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	2.82E-03
63	GO:0006520: cellular amino acid metabolic process	3.16E-03
64	GO:0006301: postreplication repair	3.49E-03
65	GO:0016070: RNA metabolic process	3.49E-03
66	GO:0070814: hydrogen sulfide biosynthetic process	3.49E-03
67	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.49E-03
68	GO:0031053: primary miRNA processing	3.49E-03
69	GO:0007035: vacuolar acidification	3.49E-03
70	GO:0009228: thiamine biosynthetic process	3.49E-03
71	GO:0000060: protein import into nucleus, translocation	3.49E-03
72	GO:0009117: nucleotide metabolic process	3.49E-03
73	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.89E-03
74	GO:0010077: maintenance of inflorescence meristem identity	4.20E-03
75	GO:0080036: regulation of cytokinin-activated signaling pathway	4.20E-03
76	GO:0010076: maintenance of floral meristem identity	4.20E-03
77	GO:0048444: floral organ morphogenesis	4.20E-03
78	GO:0010090: trichome morphogenesis	4.44E-03
79	GO:0010161: red light signaling pathway	4.95E-03
80	GO:0007050: cell cycle arrest	4.95E-03
81	GO:0000082: G1/S transition of mitotic cell cycle	4.95E-03
82	GO:0022904: respiratory electron transport chain	4.95E-03
83	GO:0050790: regulation of catalytic activity	4.95E-03
84	GO:0016126: sterol biosynthetic process	5.63E-03
85	GO:0045292: mRNA cis splicing, via spliceosome	5.76E-03
86	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.76E-03
87	GO:0009704: de-etiolation	5.76E-03
88	GO:0000028: ribosomal small subunit assembly	5.76E-03
89	GO:0045010: actin nucleation	5.76E-03
90	GO:0035556: intracellular signal transduction	6.41E-03
91	GO:0010099: regulation of photomorphogenesis	6.60E-03
92	GO:0015995: chlorophyll biosynthetic process	6.63E-03
93	GO:0098656: anion transmembrane transport	7.48E-03
94	GO:0046685: response to arsenic-containing substance	7.48E-03
95	GO:0046916: cellular transition metal ion homeostasis	7.48E-03
96	GO:0006754: ATP biosynthetic process	7.48E-03
97	GO:0009056: catabolic process	7.48E-03
98	GO:0000902: cell morphogenesis	7.48E-03
99	GO:1900865: chloroplast RNA modification	8.41E-03
100	GO:0010043: response to zinc ion	8.51E-03
101	GO:0009641: shade avoidance	9.37E-03
102	GO:0009970: cellular response to sulfate starvation	9.37E-03
103	GO:0000103: sulfate assimilation	9.37E-03
104	GO:0009688: abscisic acid biosynthetic process	9.37E-03
105	GO:0006099: tricarboxylic acid cycle	9.76E-03
106	GO:0009682: induced systemic resistance	1.04E-02
107	GO:0006879: cellular iron ion homeostasis	1.04E-02
108	GO:0030001: metal ion transport	1.06E-02
109	GO:0010152: pollen maturation	1.14E-02
110	GO:0010582: floral meristem determinacy	1.14E-02
111	GO:0006829: zinc II ion transport	1.25E-02
112	GO:0010102: lateral root morphogenesis	1.25E-02
113	GO:0009785: blue light signaling pathway	1.25E-02
114	GO:0006807: nitrogen compound metabolic process	1.25E-02
115	GO:0009691: cytokinin biosynthetic process	1.25E-02
116	GO:0006108: malate metabolic process	1.25E-02
117	GO:0007030: Golgi organization	1.48E-02
118	GO:0010039: response to iron ion	1.48E-02
119	GO:0000162: tryptophan biosynthetic process	1.60E-02
120	GO:0009585: red, far-red light phototransduction	1.63E-02
121	GO:0010224: response to UV-B	1.69E-02
122	GO:0006487: protein N-linked glycosylation	1.72E-02
123	GO:0009116: nucleoside metabolic process	1.72E-02
124	GO:2000377: regulation of reactive oxygen species metabolic process	1.72E-02
125	GO:0006825: copper ion transport	1.84E-02
126	GO:0010431: seed maturation	1.97E-02
127	GO:0061077: chaperone-mediated protein folding	1.97E-02
128	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.10E-02
129	GO:0007005: mitochondrion organization	2.10E-02
130	GO:0016569: covalent chromatin modification	2.19E-02
131	GO:0001944: vasculature development	2.23E-02
132	GO:0048443: stamen development	2.37E-02
133	GO:0010118: stomatal movement	2.65E-02
134	GO:0015991: ATP hydrolysis coupled proton transport	2.65E-02
135	GO:0080022: primary root development	2.65E-02
136	GO:0006662: glycerol ether metabolic process	2.80E-02
137	GO:0015986: ATP synthesis coupled proton transport	2.95E-02
138	GO:0061025: membrane fusion	2.95E-02
139	GO:0015031: protein transport	2.96E-02
140	GO:0009058: biosynthetic process	3.07E-02
141	GO:0009851: auxin biosynthetic process	3.10E-02
142	GO:0002229: defense response to oomycetes	3.25E-02
143	GO:0009739: response to gibberellin	4.48E-02
144	GO:0042128: nitrate assimilation	4.57E-02
145	GO:0006906: vesicle fusion	4.57E-02
146	GO:0010411: xyloglucan metabolic process	4.75E-02
147	GO:0006888: ER to Golgi vesicle-mediated transport	4.75E-02
148	GO:0048573: photoperiodism, flowering	4.75E-02
149	GO:0006950: response to stress	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
3	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	0.00E+00
4	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
5	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
6	GO:0042030: ATPase inhibitor activity	0.00E+00
7	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
8	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.69E-05
9	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.47E-05
10	GO:0016787: hydrolase activity	3.67E-05
11	GO:0000254: C-4 methylsterol oxidase activity	3.75E-05
12	GO:0008930: methylthioadenosine nucleosidase activity	3.24E-04
13	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.24E-04
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.24E-04
15	GO:0004560: alpha-L-fucosidase activity	3.24E-04
16	GO:0004793: threonine aldolase activity	3.24E-04
17	GO:0016783: sulfurtransferase activity	3.24E-04
18	GO:0102293: pheophytinase b activity	3.24E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	3.24E-04
20	GO:0008732: L-allo-threonine aldolase activity	3.24E-04
21	GO:0030611: arsenate reductase activity	3.24E-04
22	GO:0008782: adenosylhomocysteine nucleosidase activity	3.24E-04
23	GO:0004034: aldose 1-epimerase activity	3.40E-04
24	GO:0016853: isomerase activity	3.76E-04
25	GO:0004067: asparaginase activity	7.07E-04
26	GO:0004826: phenylalanine-tRNA ligase activity	7.07E-04
27	GO:0008798: beta-aspartyl-peptidase activity	7.07E-04
28	GO:0004046: aminoacylase activity	7.07E-04
29	GO:0004061: arylformamidase activity	7.07E-04
30	GO:0019172: glyoxalase III activity	7.07E-04
31	GO:0047746: chlorophyllase activity	7.07E-04
32	GO:0010331: gibberellin binding	7.07E-04
33	GO:0015266: protein channel activity	1.03E-03
34	GO:0004848: ureidoglycolate hydrolase activity	1.15E-03
35	GO:0004663: Rab geranylgeranyltransferase activity	1.15E-03
36	GO:0032403: protein complex binding	1.15E-03
37	GO:0004781: sulfate adenylyltransferase (ATP) activity	1.15E-03
38	GO:0005528: FK506 binding	1.59E-03
39	GO:0035529: NADH pyrophosphatase activity	1.65E-03
40	GO:0004792: thiosulfate sulfurtransferase activity	1.65E-03
41	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.65E-03
42	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.65E-03
43	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.65E-03
44	GO:0000339: RNA cap binding	1.65E-03
45	GO:0004834: tryptophan synthase activity	2.21E-03
46	GO:0010011: auxin binding	2.21E-03
47	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.21E-03
48	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.21E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.27E-03
50	GO:0003824: catalytic activity	2.53E-03
51	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.82E-03
52	GO:0005496: steroid binding	2.82E-03
53	GO:0004356: glutamate-ammonia ligase activity	2.82E-03
54	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.49E-03
55	GO:0051117: ATPase binding	3.49E-03
56	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.49E-03
57	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.49E-03
58	GO:0016491: oxidoreductase activity	3.76E-03
59	GO:0070300: phosphatidic acid binding	4.20E-03
60	GO:0009927: histidine phosphotransfer kinase activity	4.20E-03
61	GO:0016621: cinnamoyl-CoA reductase activity	4.95E-03
62	GO:0008143: poly(A) binding	4.95E-03
63	GO:0008320: protein transmembrane transporter activity	4.95E-03
64	GO:0035064: methylated histone binding	5.76E-03
65	GO:0015078: hydrogen ion transmembrane transporter activity	6.60E-03
66	GO:0046914: transition metal ion binding	6.60E-03
67	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.35E-03
68	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.48E-03
69	GO:0071949: FAD binding	7.48E-03
70	GO:0045309: protein phosphorylated amino acid binding	8.41E-03
71	GO:0047617: acyl-CoA hydrolase activity	8.41E-03
72	GO:0008794: arsenate reductase (glutaredoxin) activity	1.04E-02
73	GO:0019904: protein domain specific binding	1.04E-02
74	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.04E-02
75	GO:0000049: tRNA binding	1.14E-02
76	GO:0005315: inorganic phosphate transmembrane transporter activity	1.25E-02
77	GO:0004089: carbonate dehydratase activity	1.25E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.31E-02
79	GO:0043621: protein self-association	1.31E-02
80	GO:0005198: structural molecule activity	1.36E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	1.53E-02
82	GO:0004725: protein tyrosine phosphatase activity	1.60E-02
83	GO:0051536: iron-sulfur cluster binding	1.72E-02
84	GO:0043130: ubiquitin binding	1.72E-02
85	GO:0043424: protein histidine kinase binding	1.84E-02
86	GO:0005506: iron ion binding	1.92E-02
87	GO:0008514: organic anion transmembrane transporter activity	2.37E-02
88	GO:0047134: protein-disulfide reductase activity	2.51E-02
89	GO:0004386: helicase activity	2.54E-02
90	GO:0046873: metal ion transmembrane transporter activity	2.80E-02
91	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.80E-02
92	GO:0004791: thioredoxin-disulfide reductase activity	2.95E-02
93	GO:0050662: coenzyme binding	2.95E-02
94	GO:0048038: quinone binding	3.25E-02
95	GO:0004197: cysteine-type endopeptidase activity	3.41E-02
96	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.57E-02
97	GO:0016413: O-acetyltransferase activity	4.06E-02
98	GO:0016597: amino acid binding	4.06E-02
99	GO:0016168: chlorophyll binding	4.40E-02
100	GO:0008375: acetylglucosaminyltransferase activity	4.57E-02
101	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.57E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	2.41E-14
2	GO:0009507: chloroplast	1.05E-05
3	GO:0005829: cytosol	1.51E-05
4	GO:0045271: respiratory chain complex I	1.50E-04
5	GO:0000152: nuclear ubiquitin ligase complex	3.24E-04
6	GO:0005845: mRNA cap binding complex	3.24E-04
7	GO:0045273: respiratory chain complex II	3.40E-04
8	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.40E-04
9	GO:0005846: nuclear cap binding complex	7.07E-04
10	GO:0009536: plastid	1.04E-03
11	GO:0005758: mitochondrial intermembrane space	1.59E-03
12	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.65E-03
13	GO:0009570: chloroplast stroma	1.88E-03
14	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.21E-03
15	GO:0009527: plastid outer membrane	2.21E-03
16	GO:0031372: UBC13-MMS2 complex	2.21E-03
17	GO:0009517: PSII associated light-harvesting complex II	2.21E-03
18	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.21E-03
19	GO:0005773: vacuole	2.42E-03
20	GO:0031966: mitochondrial membrane	2.49E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.50E-03
22	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.82E-03
23	GO:0005746: mitochondrial respiratory chain	2.82E-03
24	GO:0005737: cytoplasm	3.35E-03
25	GO:0032588: trans-Golgi network membrane	3.49E-03
26	GO:0031209: SCAR complex	3.49E-03
27	GO:0009840: chloroplastic endopeptidase Clp complex	4.20E-03
28	GO:0009941: chloroplast envelope	4.24E-03
29	GO:0031969: chloroplast membrane	4.69E-03
30	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	4.95E-03
31	GO:0005783: endoplasmic reticulum	5.36E-03
32	GO:0009501: amyloplast	5.76E-03
33	GO:0005763: mitochondrial small ribosomal subunit	7.48E-03
34	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.48E-03
35	GO:0031901: early endosome membrane	7.48E-03
36	GO:0005759: mitochondrial matrix	7.61E-03
37	GO:0016604: nuclear body	8.41E-03
38	GO:0005765: lysosomal membrane	1.04E-02
39	GO:0005764: lysosome	1.36E-02
40	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.48E-02
41	GO:0005789: endoplasmic reticulum membrane	1.48E-02
42	GO:0005739: mitochondrion	1.50E-02
43	GO:0009532: plastid stroma	1.97E-02
44	GO:0016607: nuclear speck	1.99E-02
45	GO:0010287: plastoglobule	2.76E-02
46	GO:0009543: chloroplast thylakoid lumen	2.91E-02
47	GO:0009523: photosystem II	3.10E-02
48	GO:0000785: chromatin	3.41E-02
49	GO:0071944: cell periphery	3.57E-02
50	GO:0032580: Golgi cisterna membrane	3.73E-02
51	GO:0010319: stromule	3.89E-02
52	GO:0005778: peroxisomal membrane	3.89E-02
53	GO:0005788: endoplasmic reticulum lumen	4.40E-02