Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009264: deoxyribonucleotide catabolic process0.00E+00
2GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
3GO:0034050: host programmed cell death induced by symbiont0.00E+00
4GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
5GO:0071731: response to nitric oxide0.00E+00
6GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
7GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
8GO:1990258: histone glutamine methylation0.00E+00
9GO:0090239: regulation of histone H4 acetylation0.00E+00
10GO:0032049: cardiolipin biosynthetic process0.00E+00
11GO:0072321: chaperone-mediated protein transport0.00E+00
12GO:0044843: cell cycle G1/S phase transition0.00E+00
13GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
14GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
15GO:0006412: translation2.14E-147
16GO:0042254: ribosome biogenesis1.81E-56
17GO:0000027: ribosomal large subunit assembly8.99E-17
18GO:0006626: protein targeting to mitochondrion4.13E-12
19GO:0006413: translational initiation2.57E-07
20GO:0000028: ribosomal small subunit assembly1.75E-06
21GO:0006364: rRNA processing1.26E-05
22GO:0001731: formation of translation preinitiation complex1.89E-05
23GO:0048569: post-embryonic animal organ development2.29E-05
24GO:0009967: positive regulation of signal transduction2.29E-05
25GO:0009955: adaxial/abaxial pattern specification3.13E-05
26GO:0006446: regulation of translational initiation3.14E-05
27GO:0030150: protein import into mitochondrial matrix6.13E-05
28GO:0045039: protein import into mitochondrial inner membrane7.39E-05
29GO:1902626: assembly of large subunit precursor of preribosome7.39E-05
30GO:0002181: cytoplasmic translation7.39E-05
31GO:0006414: translational elongation7.89E-05
32GO:0000387: spliceosomal snRNP assembly1.65E-04
33GO:0009735: response to cytokinin1.87E-04
34GO:0010162: seed dormancy process2.08E-04
35GO:0042274: ribosomal small subunit biogenesis2.57E-04
36GO:0000398: mRNA splicing, via spliceosome3.32E-04
37GO:0031167: rRNA methylation3.86E-04
38GO:0045040: protein import into mitochondrial outer membrane5.37E-04
39GO:0006458: 'de novo' protein folding7.09E-04
40GO:0000245: spliceosomal complex assembly7.09E-04
41GO:0016444: somatic cell DNA recombination7.09E-04
42GO:0006434: seryl-tRNA aminoacylation7.34E-04
43GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.34E-04
44GO:1901430: positive regulation of syringal lignin biosynthetic process7.34E-04
45GO:0006169: adenosine salvage7.34E-04
46GO:0006407: rRNA export from nucleus7.34E-04
47GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.34E-04
48GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.34E-04
49GO:0031120: snRNA pseudouridine synthesis7.34E-04
50GO:0000469: cleavage involved in rRNA processing7.34E-04
51GO:0019877: diaminopimelate biosynthetic process7.34E-04
52GO:0031118: rRNA pseudouridine synthesis7.34E-04
53GO:0015801: aromatic amino acid transport7.34E-04
54GO:0048453: sepal formation7.34E-04
55GO:0035266: meristem growth7.34E-04
56GO:0031060: regulation of histone methylation7.34E-04
57GO:0030490: maturation of SSU-rRNA7.34E-04
58GO:0007005: mitochondrion organization9.65E-04
59GO:0046686: response to cadmium ion1.08E-03
60GO:0001510: RNA methylation1.37E-03
61GO:0008033: tRNA processing1.47E-03
62GO:0043981: histone H4-K5 acetylation1.58E-03
63GO:0006452: translational frameshifting1.58E-03
64GO:0015786: UDP-glucose transport1.58E-03
65GO:0045859: regulation of protein kinase activity1.58E-03
66GO:0045905: positive regulation of translational termination1.58E-03
67GO:0009156: ribonucleoside monophosphate biosynthetic process1.58E-03
68GO:2000072: regulation of defense response to fungus, incompatible interaction1.58E-03
69GO:0045901: positive regulation of translational elongation1.58E-03
70GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.58E-03
71GO:0045041: protein import into mitochondrial intermembrane space1.58E-03
72GO:0010197: polar nucleus fusion1.62E-03
73GO:0008283: cell proliferation1.82E-03
74GO:0009651: response to salt stress2.44E-03
75GO:0006954: inflammatory response2.62E-03
76GO:0009150: purine ribonucleotide metabolic process2.62E-03
77GO:0008652: cellular amino acid biosynthetic process2.62E-03
78GO:0015783: GDP-fucose transport2.62E-03
79GO:0010476: gibberellin mediated signaling pathway2.62E-03
80GO:0042256: mature ribosome assembly2.62E-03
81GO:0010338: leaf formation2.62E-03
82GO:0006820: anion transport3.03E-03
83GO:0009793: embryo development ending in seed dormancy3.67E-03
84GO:0006241: CTP biosynthetic process3.81E-03
85GO:0072334: UDP-galactose transmembrane transport3.81E-03
86GO:0010971: positive regulation of G2/M transition of mitotic cell cycle3.81E-03
87GO:0032981: mitochondrial respiratory chain complex I assembly3.81E-03
88GO:0006165: nucleoside diphosphate phosphorylation3.81E-03
89GO:0006228: UTP biosynthetic process3.81E-03
90GO:0006164: purine nucleotide biosynthetic process3.81E-03
91GO:0009855: determination of bilateral symmetry3.81E-03
92GO:0046513: ceramide biosynthetic process3.81E-03
93GO:0006383: transcription from RNA polymerase III promoter3.81E-03
94GO:0007004: telomere maintenance via telomerase3.81E-03
95GO:0033617: mitochondrial respiratory chain complex IV assembly3.81E-03
96GO:0070301: cellular response to hydrogen peroxide3.81E-03
97GO:0006183: GTP biosynthetic process5.15E-03
98GO:0010363: regulation of plant-type hypersensitive response5.15E-03
99GO:0042273: ribosomal large subunit biogenesis5.15E-03
100GO:0051205: protein insertion into membrane5.15E-03
101GO:0009165: nucleotide biosynthetic process5.15E-03
102GO:0051781: positive regulation of cell division5.15E-03
103GO:0009944: polarity specification of adaxial/abaxial axis5.43E-03
104GO:0006334: nucleosome assembly6.60E-03
105GO:0061077: chaperone-mediated protein folding6.60E-03
106GO:0019408: dolichol biosynthetic process6.62E-03
107GO:0006461: protein complex assembly6.62E-03
108GO:1902183: regulation of shoot apical meristem development6.62E-03
109GO:0044209: AMP salvage6.62E-03
110GO:0071215: cellular response to abscisic acid stimulus7.91E-03
111GO:0009294: DNA mediated transformation7.91E-03
112GO:0040007: growth7.91E-03
113GO:0000470: maturation of LSU-rRNA8.23E-03
114GO:0010358: leaf shaping8.23E-03
115GO:0016554: cytidine to uridine editing8.23E-03
116GO:0000741: karyogamy8.23E-03
117GO:0016070: RNA metabolic process8.23E-03
118GO:1901001: negative regulation of response to salt stress9.97E-03
119GO:0042026: protein refolding9.97E-03
120GO:0000054: ribosomal subunit export from nucleus9.97E-03
121GO:0009648: photoperiodism9.97E-03
122GO:0000413: protein peptidyl-prolyl isomerization1.01E-02
123GO:0009409: response to cold1.05E-02
124GO:0010305: leaf vascular tissue pattern formation1.09E-02
125GO:0080186: developmental vegetative growth1.18E-02
126GO:0009645: response to low light intensity stimulus1.18E-02
127GO:0009749: response to glucose1.26E-02
128GO:0001522: pseudouridine synthesis1.38E-02
129GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.38E-02
130GO:0051603: proteolysis involved in cellular protein catabolic process1.39E-02
131GO:0001558: regulation of cell growth1.59E-02
132GO:0010204: defense response signaling pathway, resistance gene-independent1.59E-02
133GO:0030968: endoplasmic reticulum unfolded protein response1.59E-02
134GO:0043562: cellular response to nitrogen levels1.59E-02
135GO:0007338: single fertilization1.80E-02
136GO:0009051: pentose-phosphate shunt, oxidative branch1.80E-02
137GO:0009245: lipid A biosynthetic process1.80E-02
138GO:0048507: meristem development1.80E-02
139GO:0006189: 'de novo' IMP biosynthetic process1.80E-02
140GO:0015780: nucleotide-sugar transport1.80E-02
141GO:0098656: anion transmembrane transport1.80E-02
142GO:0009553: embryo sac development2.00E-02
143GO:0042761: very long-chain fatty acid biosynthetic process2.03E-02
144GO:0010449: root meristem growth2.03E-02
145GO:0015031: protein transport2.12E-02
146GO:0009870: defense response signaling pathway, resistance gene-dependent2.27E-02
147GO:0030422: production of siRNA involved in RNA interference2.27E-02
148GO:0045036: protein targeting to chloroplast2.27E-02
149GO:0006259: DNA metabolic process2.27E-02
150GO:0009089: lysine biosynthetic process via diaminopimelate2.52E-02
151GO:0006913: nucleocytoplasmic transport2.52E-02
152GO:0009682: induced systemic resistance2.52E-02
153GO:0015770: sucrose transport2.52E-02
154GO:0010015: root morphogenesis2.52E-02
155GO:0010311: lateral root formation2.70E-02
156GO:0006790: sulfur compound metabolic process2.77E-02
157GO:0012501: programmed cell death2.77E-02
158GO:0010043: response to zinc ion2.97E-02
159GO:2000012: regulation of auxin polar transport3.04E-02
160GO:0010102: lateral root morphogenesis3.04E-02
161GO:0006006: glucose metabolic process3.04E-02
162GO:2000028: regulation of photoperiodism, flowering3.04E-02
163GO:0000724: double-strand break repair via homologous recombination3.12E-02
164GO:0042744: hydrogen peroxide catabolic process3.24E-02
165GO:0048467: gynoecium development3.31E-02
166GO:0048440: carpel development3.31E-02
167GO:0002237: response to molecule of bacterial origin3.31E-02
168GO:0009933: meristem structural organization3.31E-02
169GO:0090351: seedling development3.59E-02
170GO:0009116: nucleoside metabolic process4.18E-02
171GO:0006289: nucleotide-excision repair4.18E-02
172GO:0006487: protein N-linked glycosylation4.18E-02
173GO:0010073: meristem maintenance4.48E-02
174GO:0051302: regulation of cell division4.48E-02
175GO:0009644: response to high light intensity4.54E-02
176GO:0009965: leaf morphogenesis4.71E-02
177GO:0003333: amino acid transmembrane transport4.79E-02
178GO:0015992: proton transport4.79E-02
179GO:0051260: protein homooligomerization4.79E-02
180GO:0048511: rhythmic process4.79E-02
181GO:0010431: seed maturation4.79E-02
RankGO TermAdjusted P value
1GO:0034513: box H/ACA snoRNA binding0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:1990259: histone-glutamine methyltransferase activity0.00E+00
4GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
5GO:0008808: cardiolipin synthase activity0.00E+00
6GO:0003735: structural constituent of ribosome1.02E-184
7GO:0003729: mRNA binding7.22E-35
8GO:0019843: rRNA binding5.53E-14
9GO:0003746: translation elongation factor activity9.19E-12
10GO:0003723: RNA binding2.97E-09
11GO:0003743: translation initiation factor activity5.85E-09
12GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.21E-08
13GO:0030515: snoRNA binding9.85E-07
14GO:0005078: MAP-kinase scaffold activity2.29E-05
15GO:0008649: rRNA methyltransferase activity7.39E-05
16GO:0008097: 5S rRNA binding1.53E-04
17GO:0001055: RNA polymerase II activity1.65E-04
18GO:0000166: nucleotide binding2.49E-04
19GO:0001054: RNA polymerase I activity2.57E-04
20GO:0044183: protein binding involved in protein folding2.57E-04
21GO:0001056: RNA polymerase III activity3.11E-04
22GO:0031369: translation initiation factor binding5.37E-04
23GO:0004407: histone deacetylase activity6.71E-04
24GO:0000824: inositol tetrakisphosphate 3-kinase activity7.34E-04
25GO:0047326: inositol tetrakisphosphate 5-kinase activity7.34E-04
26GO:0004828: serine-tRNA ligase activity7.34E-04
27GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.34E-04
28GO:0048037: cofactor binding7.34E-04
29GO:0004679: AMP-activated protein kinase activity7.34E-04
30GO:0005080: protein kinase C binding7.34E-04
31GO:0004001: adenosine kinase activity7.34E-04
32GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.34E-04
33GO:0035614: snRNA stem-loop binding7.34E-04
34GO:0016817: hydrolase activity, acting on acid anhydrides7.34E-04
35GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase7.34E-04
36GO:0004298: threonine-type endopeptidase activity8.61E-04
37GO:0043022: ribosome binding1.12E-03
38GO:0015288: porin activity1.12E-03
39GO:0008308: voltage-gated anion channel activity1.37E-03
40GO:0008135: translation factor activity, RNA binding1.37E-03
41GO:0015173: aromatic amino acid transmembrane transporter activity1.58E-03
42GO:0070034: telomerase RNA binding1.58E-03
43GO:0004750: ribulose-phosphate 3-epimerase activity1.58E-03
44GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.58E-03
45GO:0004775: succinate-CoA ligase (ADP-forming) activity1.58E-03
46GO:0030572: phosphatidyltransferase activity1.58E-03
47GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.58E-03
48GO:0035241: protein-arginine omega-N monomethyltransferase activity1.58E-03
49GO:0030619: U1 snRNA binding1.58E-03
50GO:0004776: succinate-CoA ligase (GDP-forming) activity1.58E-03
51GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.58E-03
52GO:0050291: sphingosine N-acyltransferase activity1.58E-03
53GO:0004618: phosphoglycerate kinase activity1.58E-03
54GO:0032947: protein complex scaffold2.62E-03
55GO:0008253: 5'-nucleotidase activity2.62E-03
56GO:0005457: GDP-fucose transmembrane transporter activity2.62E-03
57GO:0008469: histone-arginine N-methyltransferase activity2.62E-03
58GO:0015462: ATPase-coupled protein transmembrane transporter activity2.62E-03
59GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.89E-03
60GO:0015266: protein channel activity3.45E-03
61GO:0019201: nucleotide kinase activity3.81E-03
62GO:0005460: UDP-glucose transmembrane transporter activity3.81E-03
63GO:0004550: nucleoside diphosphate kinase activity3.81E-03
64GO:0047627: adenylylsulfatase activity3.81E-03
65GO:0004749: ribose phosphate diphosphokinase activity3.81E-03
66GO:0070628: proteasome binding5.15E-03
67GO:0004345: glucose-6-phosphate dehydrogenase activity5.15E-03
68GO:0050897: cobalt ion binding5.79E-03
69GO:0005459: UDP-galactose transmembrane transporter activity6.62E-03
70GO:0004888: transmembrane signaling receptor activity6.62E-03
71GO:0045547: dehydrodolichyl diphosphate synthase activity6.62E-03
72GO:0005275: amine transmembrane transporter activity6.62E-03
73GO:0004040: amidase activity6.62E-03
74GO:0005525: GTP binding7.58E-03
75GO:0042393: histone binding7.71E-03
76GO:0031593: polyubiquitin binding8.23E-03
77GO:0031177: phosphopantetheine binding8.23E-03
78GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity8.23E-03
79GO:0004017: adenylate kinase activity9.97E-03
80GO:0000035: acyl binding9.97E-03
81GO:0019887: protein kinase regulator activity9.97E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity9.97E-03
83GO:0005338: nucleotide-sugar transmembrane transporter activity1.18E-02
84GO:0008235: metalloexopeptidase activity1.18E-02
85GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.38E-02
86GO:0005507: copper ion binding1.43E-02
87GO:0003678: DNA helicase activity1.80E-02
88GO:0051082: unfolded protein binding2.08E-02
89GO:0008515: sucrose transmembrane transporter activity2.52E-02
90GO:0000049: tRNA binding2.77E-02
91GO:0008233: peptidase activity2.97E-02
92GO:0051119: sugar transmembrane transporter activity3.59E-02
93GO:0043130: ubiquitin binding4.18E-02
94GO:0031418: L-ascorbic acid binding4.18E-02
95GO:0051087: chaperone binding4.48E-02
96GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.79E-02
97GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.88E-02
RankGO TermAdjusted P value
1GO:0090661: box H/ACA telomerase RNP complex0.00E+00
2GO:0042719: mitochondrial intermembrane space protein transporter complex0.00E+00
3GO:0072589: box H/ACA scaRNP complex0.00E+00
4GO:0005832: chaperonin-containing T-complex0.00E+00
5GO:0043186: P granule0.00E+00
6GO:0005840: ribosome2.79E-128
7GO:0022625: cytosolic large ribosomal subunit1.76E-118
8GO:0022626: cytosolic ribosome2.06E-107
9GO:0022627: cytosolic small ribosomal subunit7.99E-76
10GO:0005730: nucleolus3.76E-51
11GO:0005829: cytosol6.65E-47
12GO:0005737: cytoplasm9.65E-40
13GO:0009506: plasmodesma8.28E-29
14GO:0005774: vacuolar membrane1.30E-18
15GO:0015934: large ribosomal subunit2.99E-18
16GO:0015935: small ribosomal subunit1.86E-12
17GO:0016020: membrane2.90E-11
18GO:0005618: cell wall1.59E-10
19GO:0005773: vacuole1.64E-10
20GO:0005852: eukaryotic translation initiation factor 3 complex3.64E-07
21GO:0005742: mitochondrial outer membrane translocase complex2.89E-06
22GO:0009507: chloroplast5.06E-06
23GO:0015030: Cajal body6.75E-06
24GO:0005665: DNA-directed RNA polymerase II, core complex1.84E-05
25GO:0016282: eukaryotic 43S preinitiation complex1.89E-05
26GO:0031428: box C/D snoRNP complex1.89E-05
27GO:0033290: eukaryotic 48S preinitiation complex3.13E-05
28GO:0005732: small nucleolar ribonucleoprotein complex4.87E-05
29GO:0005886: plasma membrane5.92E-05
30GO:0005758: mitochondrial intermembrane space6.13E-05
31GO:0034719: SMN-Sm protein complex7.39E-05
32GO:0005853: eukaryotic translation elongation factor 1 complex7.39E-05
33GO:0005743: mitochondrial inner membrane1.25E-04
34GO:0005736: DNA-directed RNA polymerase I complex1.28E-04
35GO:0005685: U1 snRNP1.28E-04
36GO:0005681: spliceosomal complex1.59E-04
37GO:0005666: DNA-directed RNA polymerase III complex1.65E-04
38GO:0071011: precatalytic spliceosome1.65E-04
39GO:0000418: DNA-directed RNA polymerase IV complex2.08E-04
40GO:0005682: U5 snRNP2.57E-04
41GO:0071013: catalytic step 2 spliceosome2.57E-04
42GO:0032040: small-subunit processome3.11E-04
43GO:0019013: viral nucleocapsid3.71E-04
44GO:0005687: U4 snRNP3.86E-04
45GO:0097526: spliceosomal tri-snRNP complex3.86E-04
46GO:0000419: DNA-directed RNA polymerase V complex5.87E-04
47GO:0005689: U12-type spliceosomal complex7.09E-04
48GO:0030686: 90S preribosome7.34E-04
49GO:0005839: proteasome core complex8.61E-04
50GO:0005741: mitochondrial outer membrane8.61E-04
51GO:0005744: mitochondrial inner membrane presequence translocase complex1.20E-03
52GO:0046930: pore complex1.37E-03
53GO:0071010: prespliceosome1.58E-03
54GO:0005686: U2 snRNP2.28E-03
55GO:0034715: pICln-Sm protein complex2.62E-03
56GO:0031429: box H/ACA snoRNP complex3.81E-03
57GO:0005747: mitochondrial respiratory chain complex I3.93E-03
58GO:0005834: heterotrimeric G-protein complex4.13E-03
59GO:0009707: chloroplast outer membrane4.81E-03
60GO:0005851: eukaryotic translation initiation factor 2B complex8.23E-03
61GO:0000974: Prp19 complex8.23E-03
62GO:0000243: commitment complex8.23E-03
63GO:0016272: prefoldin complex9.97E-03
64GO:0031359: integral component of chloroplast outer membrane1.18E-02
65GO:0000502: proteasome complex1.33E-02
66GO:0005688: U6 snRNP1.38E-02
67GO:0071004: U2-type prespliceosome1.38E-02
68GO:0046540: U4/U6 x U5 tri-snRNP complex1.59E-02
69GO:0005763: mitochondrial small ribosomal subunit1.80E-02
70GO:0009536: plastid1.96E-02
71GO:0030529: intracellular ribonucleoprotein complex1.97E-02
72GO:0016604: nuclear body2.03E-02
73GO:0005622: intracellular2.27E-02
74GO:0048471: perinuclear region of cytoplasm2.52E-02
75GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.54E-02
76GO:0031307: integral component of mitochondrial outer membrane2.77E-02
77GO:0005759: mitochondrial matrix3.66E-02
78GO:0070469: respiratory chain4.48E-02
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Gene type



Gene DE type