Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0034337: RNA folding0.00E+00
5GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
6GO:0009715: chalcone biosynthetic process0.00E+00
7GO:0016118: carotenoid catabolic process0.00E+00
8GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
12GO:0015979: photosynthesis8.88E-15
13GO:0009768: photosynthesis, light harvesting in photosystem I5.56E-13
14GO:0018298: protein-chromophore linkage2.83E-12
15GO:0010207: photosystem II assembly1.98E-09
16GO:0009769: photosynthesis, light harvesting in photosystem II4.78E-09
17GO:0009645: response to low light intensity stimulus4.78E-09
18GO:0010206: photosystem II repair2.37E-08
19GO:0009644: response to high light intensity6.29E-08
20GO:0009416: response to light stimulus1.70E-07
21GO:0019253: reductive pentose-phosphate cycle2.02E-07
22GO:0055114: oxidation-reduction process2.64E-07
23GO:0015995: chlorophyll biosynthetic process3.27E-07
24GO:0010196: nonphotochemical quenching9.13E-07
25GO:0035304: regulation of protein dephosphorylation1.11E-06
26GO:0010114: response to red light1.64E-06
27GO:0010205: photoinhibition4.00E-06
28GO:0006000: fructose metabolic process4.13E-06
29GO:0090391: granum assembly4.13E-06
30GO:0006096: glycolytic process5.53E-06
31GO:0006094: gluconeogenesis1.11E-05
32GO:0006006: glucose metabolic process1.11E-05
33GO:0010218: response to far red light1.71E-05
34GO:0006021: inositol biosynthetic process1.80E-05
35GO:0016123: xanthophyll biosynthetic process2.93E-05
36GO:0009269: response to desiccation3.30E-05
37GO:0042549: photosystem II stabilization4.37E-05
38GO:0010189: vitamin E biosynthetic process6.14E-05
39GO:0019252: starch biosynthetic process8.98E-05
40GO:0009642: response to light intensity1.06E-04
41GO:0006002: fructose 6-phosphate metabolic process1.33E-04
42GO:0043609: regulation of carbon utilization1.50E-04
43GO:0010028: xanthophyll cycle1.50E-04
44GO:0006419: alanyl-tRNA aminoacylation1.50E-04
45GO:0071277: cellular response to calcium ion1.50E-04
46GO:0000481: maturation of 5S rRNA1.50E-04
47GO:0006098: pentose-phosphate shunt1.63E-04
48GO:0090333: regulation of stomatal closure1.63E-04
49GO:0010027: thylakoid membrane organization1.70E-04
50GO:0019684: photosynthesis, light reaction2.70E-04
51GO:0009773: photosynthetic electron transport in photosystem I2.70E-04
52GO:0043085: positive regulation of catalytic activity2.70E-04
53GO:0009409: response to cold3.35E-04
54GO:0009637: response to blue light3.38E-04
55GO:0009853: photorespiration3.38E-04
56GO:0006729: tetrahydrobiopterin biosynthetic process3.42E-04
57GO:0016121: carotene catabolic process3.42E-04
58GO:0030388: fructose 1,6-bisphosphate metabolic process3.42E-04
59GO:0042853: L-alanine catabolic process3.42E-04
60GO:0009629: response to gravity3.42E-04
61GO:0016124: xanthophyll catabolic process3.42E-04
62GO:0010042: response to manganese ion3.42E-04
63GO:0006432: phenylalanyl-tRNA aminoacylation3.42E-04
64GO:0097054: L-glutamate biosynthetic process3.42E-04
65GO:0034599: cellular response to oxidative stress3.58E-04
66GO:0009744: response to sucrose4.69E-04
67GO:0005977: glycogen metabolic process5.61E-04
68GO:1902448: positive regulation of shade avoidance5.61E-04
69GO:0042742: defense response to bacterium7.18E-04
70GO:0006020: inositol metabolic process8.03E-04
71GO:0071484: cellular response to light intensity8.03E-04
72GO:0006537: glutamate biosynthetic process8.03E-04
73GO:0042823: pyridoxal phosphate biosynthetic process8.03E-04
74GO:0019676: ammonia assimilation cycle1.06E-03
75GO:0015976: carbon utilization1.06E-03
76GO:0019464: glycine decarboxylation via glycine cleavage system1.06E-03
77GO:0009765: photosynthesis, light harvesting1.06E-03
78GO:0006109: regulation of carbohydrate metabolic process1.06E-03
79GO:0015994: chlorophyll metabolic process1.06E-03
80GO:0030104: water homeostasis1.06E-03
81GO:0006546: glycine catabolic process1.06E-03
82GO:0009902: chloroplast relocation1.06E-03
83GO:0010021: amylopectin biosynthetic process1.06E-03
84GO:0006662: glycerol ether metabolic process1.07E-03
85GO:0009793: embryo development ending in seed dormancy1.11E-03
86GO:0010236: plastoquinone biosynthetic process1.35E-03
87GO:0010304: PSII associated light-harvesting complex II catabolic process1.65E-03
88GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.65E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.65E-03
90GO:0046855: inositol phosphate dephosphorylation1.65E-03
91GO:0009635: response to herbicide1.65E-03
92GO:0050665: hydrogen peroxide biosynthetic process1.65E-03
93GO:0046686: response to cadmium ion1.72E-03
94GO:0071470: cellular response to osmotic stress1.98E-03
95GO:1901259: chloroplast rRNA processing1.98E-03
96GO:0009854: oxidative photosynthetic carbon pathway1.98E-03
97GO:0009772: photosynthetic electron transport in photosystem II2.33E-03
98GO:0030026: cellular manganese ion homeostasis2.33E-03
99GO:0006400: tRNA modification2.33E-03
100GO:0009813: flavonoid biosynthetic process2.57E-03
101GO:0031540: regulation of anthocyanin biosynthetic process2.70E-03
102GO:0009704: de-etiolation2.70E-03
103GO:0032508: DNA duplex unwinding2.70E-03
104GO:0071482: cellular response to light stimulus3.08E-03
105GO:0009735: response to cytokinin3.26E-03
106GO:0098656: anion transmembrane transport3.49E-03
107GO:0009245: lipid A biosynthetic process3.49E-03
108GO:0006754: ATP biosynthetic process3.49E-03
109GO:0009658: chloroplast organization3.65E-03
110GO:0009641: shade avoidance4.35E-03
111GO:0009688: abscisic acid biosynthetic process4.35E-03
112GO:0018119: peptidyl-cysteine S-nitrosylation4.80E-03
113GO:0006790: sulfur compound metabolic process5.27E-03
114GO:0005983: starch catabolic process5.27E-03
115GO:0010224: response to UV-B5.54E-03
116GO:0009767: photosynthetic electron transport chain5.75E-03
117GO:0005986: sucrose biosynthetic process5.75E-03
118GO:0010223: secondary shoot formation6.25E-03
119GO:0046854: phosphatidylinositol phosphorylation6.77E-03
120GO:0046688: response to copper ion6.77E-03
121GO:0090351: seedling development6.77E-03
122GO:0009408: response to heat7.86E-03
123GO:0008299: isoprenoid biosynthetic process8.40E-03
124GO:0019748: secondary metabolic process9.56E-03
125GO:0071215: cellular response to abscisic acid stimulus1.02E-02
126GO:0009561: megagametogenesis1.08E-02
127GO:0016117: carotenoid biosynthetic process1.14E-02
128GO:0006606: protein import into nucleus1.20E-02
129GO:0042335: cuticle development1.20E-02
130GO:0010182: sugar mediated signaling pathway1.27E-02
131GO:0006814: sodium ion transport1.34E-02
132GO:0015986: ATP synthesis coupled proton transport1.34E-02
133GO:0009791: post-embryonic development1.41E-02
134GO:0008654: phospholipid biosynthetic process1.41E-02
135GO:0071554: cell wall organization or biogenesis1.47E-02
136GO:0051607: defense response to virus1.84E-02
137GO:0006810: transport1.94E-02
138GO:0009627: systemic acquired resistance2.07E-02
139GO:0048573: photoperiodism, flowering2.15E-02
140GO:0016311: dephosphorylation2.23E-02
141GO:0006499: N-terminal protein myristoylation2.48E-02
142GO:0006811: ion transport2.48E-02
143GO:0080167: response to karrikin2.54E-02
144GO:0007568: aging2.56E-02
145GO:0010119: regulation of stomatal movement2.56E-02
146GO:0016051: carbohydrate biosynthetic process2.74E-02
147GO:0045454: cell redox homeostasis3.04E-02
148GO:0042542: response to hydrogen peroxide3.19E-02
149GO:0009926: auxin polar transport3.28E-02
150GO:0009640: photomorphogenesis3.28E-02
151GO:0032259: methylation3.58E-02
152GO:0006812: cation transport3.85E-02
153GO:0006364: rRNA processing4.05E-02
154GO:0009585: red, far-red light phototransduction4.05E-02
155GO:0043086: negative regulation of catalytic activity4.56E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
4GO:0050281: serine-glyoxylate transaminase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0016210: naringenin-chalcone synthase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0010242: oxygen evolving activity0.00E+00
9GO:0045550: geranylgeranyl reductase activity0.00E+00
10GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
14GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
15GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity0.00E+00
16GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
17GO:0015229: L-ascorbic acid transporter activity0.00E+00
18GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
19GO:0010486: manganese:proton antiporter activity0.00E+00
20GO:0031409: pigment binding2.33E-13
21GO:0016168: chlorophyll binding8.01E-11
22GO:0046872: metal ion binding4.41E-06
23GO:0031072: heat shock protein binding1.11E-05
24GO:0008266: poly(U) RNA binding1.37E-05
25GO:0008453: alanine-glyoxylate transaminase activity1.80E-05
26GO:0004332: fructose-bisphosphate aldolase activity4.37E-05
27GO:0045486: naringenin 3-dioxygenase activity1.50E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.50E-04
29GO:0016784: 3-mercaptopyruvate sulfurtransferase activity1.50E-04
30GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity1.50E-04
31GO:0047958: glycine:2-oxoglutarate aminotransferase activity1.50E-04
32GO:0004813: alanine-tRNA ligase activity1.50E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity1.50E-04
34GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity1.50E-04
35GO:0016041: glutamate synthase (ferredoxin) activity1.50E-04
36GO:0071949: FAD binding1.63E-04
37GO:0008047: enzyme activator activity2.32E-04
38GO:0000049: tRNA binding3.11E-04
39GO:0047746: chlorophyllase activity3.42E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity3.42E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.42E-04
42GO:0008934: inositol monophosphate 1-phosphatase activity3.42E-04
43GO:0052833: inositol monophosphate 4-phosphatase activity3.42E-04
44GO:0004826: phenylalanine-tRNA ligase activity3.42E-04
45GO:0004512: inositol-3-phosphate synthase activity3.42E-04
46GO:0019156: isoamylase activity3.42E-04
47GO:0010291: carotene beta-ring hydroxylase activity3.42E-04
48GO:0070402: NADPH binding5.61E-04
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor5.61E-04
50GO:0004324: ferredoxin-NADP+ reductase activity5.61E-04
51GO:0003913: DNA photolyase activity5.61E-04
52GO:0030267: glyoxylate reductase (NADP) activity5.61E-04
53GO:0051287: NAD binding5.98E-04
54GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity8.03E-04
55GO:0008508: bile acid:sodium symporter activity8.03E-04
56GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity8.03E-04
57GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity8.03E-04
58GO:0004375: glycine dehydrogenase (decarboxylating) activity8.03E-04
59GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity8.03E-04
60GO:0004792: thiosulfate sulfurtransferase activity8.03E-04
61GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor8.03E-04
62GO:0016851: magnesium chelatase activity8.03E-04
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity8.03E-04
64GO:0047134: protein-disulfide reductase activity9.27E-04
65GO:0051082: unfolded protein binding1.06E-03
66GO:0009011: starch synthase activity1.06E-03
67GO:0008891: glycolate oxidase activity1.06E-03
68GO:0004791: thioredoxin-disulfide reductase activity1.15E-03
69GO:0016491: oxidoreductase activity1.23E-03
70GO:0003959: NADPH dehydrogenase activity1.35E-03
71GO:0051538: 3 iron, 4 sulfur cluster binding1.35E-03
72GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.35E-03
73GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.49E-03
74GO:2001070: starch binding1.65E-03
75GO:0000293: ferric-chelate reductase activity1.65E-03
76GO:0031177: phosphopantetheine binding1.65E-03
77GO:0004556: alpha-amylase activity1.65E-03
78GO:0042578: phosphoric ester hydrolase activity1.65E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.98E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.98E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.98E-03
82GO:0000035: acyl binding1.98E-03
83GO:0009881: photoreceptor activity2.33E-03
84GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.70E-03
85GO:0008135: translation factor activity, RNA binding3.08E-03
86GO:0003746: translation elongation factor activity3.09E-03
87GO:0050661: NADP binding3.52E-03
88GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity3.91E-03
89GO:0005384: manganese ion transmembrane transporter activity3.91E-03
90GO:0030234: enzyme regulator activity4.35E-03
91GO:0004089: carbonate dehydratase activity5.75E-03
92GO:0005315: inorganic phosphate transmembrane transporter activity5.75E-03
93GO:0003712: transcription cofactor activity6.77E-03
94GO:0031418: L-ascorbic acid binding7.84E-03
95GO:0003954: NADH dehydrogenase activity7.84E-03
96GO:0004857: enzyme inhibitor activity7.84E-03
97GO:0015035: protein disulfide oxidoreductase activity7.84E-03
98GO:0008324: cation transmembrane transporter activity8.40E-03
99GO:0004176: ATP-dependent peptidase activity8.97E-03
100GO:0005509: calcium ion binding9.64E-03
101GO:0008514: organic anion transmembrane transporter activity1.08E-02
102GO:0003756: protein disulfide isomerase activity1.08E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.27E-02
104GO:0016853: isomerase activity1.34E-02
105GO:0010181: FMN binding1.34E-02
106GO:0008237: metallopeptidase activity1.76E-02
107GO:0016413: O-acetyltransferase activity1.84E-02
108GO:0016597: amino acid binding1.84E-02
109GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.23E-02
110GO:0005515: protein binding2.45E-02
111GO:0004222: metalloendopeptidase activity2.48E-02
112GO:0030145: manganese ion binding2.56E-02
113GO:0003993: acid phosphatase activity2.83E-02
114GO:0004185: serine-type carboxypeptidase activity3.28E-02
115GO:0005198: structural molecule activity3.56E-02
116GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.67E-02
117GO:0016874: ligase activity4.99E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast2.33E-46
3GO:0009534: chloroplast thylakoid7.19E-40
4GO:0009535: chloroplast thylakoid membrane8.90E-39
5GO:0009941: chloroplast envelope2.73E-33
6GO:0009570: chloroplast stroma3.01E-28
7GO:0009579: thylakoid6.74E-25
8GO:0010287: plastoglobule2.21E-16
9GO:0031977: thylakoid lumen1.70E-11
10GO:0009522: photosystem I7.21E-10
11GO:0030076: light-harvesting complex2.80E-09
12GO:0048046: apoplast3.87E-09
13GO:0009543: chloroplast thylakoid lumen3.03E-08
14GO:0009523: photosystem II6.05E-08
15GO:0009517: PSII associated light-harvesting complex II7.02E-08
16GO:0030095: chloroplast photosystem II2.02E-07
17GO:0009654: photosystem II oxygen evolving complex5.63E-07
18GO:0031969: chloroplast membrane9.62E-07
19GO:0019898: extrinsic component of membrane3.05E-06
20GO:0016020: membrane1.59E-05
21GO:0009706: chloroplast inner membrane1.27E-04
22GO:0009782: photosystem I antenna complex1.50E-04
23GO:0009783: photosystem II antenna complex1.50E-04
24GO:0032040: small-subunit processome3.11E-04
25GO:0031304: intrinsic component of mitochondrial inner membrane3.42E-04
26GO:0043036: starch grain3.42E-04
27GO:0010007: magnesium chelatase complex5.61E-04
28GO:0005960: glycine cleavage complex8.03E-04
29GO:0009544: chloroplast ATP synthase complex1.06E-03
30GO:0055035: plastid thylakoid membrane1.35E-03
31GO:0005623: cell1.45E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.65E-03
33GO:0010319: stromule1.68E-03
34GO:0005759: mitochondrial matrix1.86E-03
35GO:0009538: photosystem I reaction center2.70E-03
36GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.49E-03
37GO:0005777: peroxisome4.61E-03
38GO:0005578: proteinaceous extracellular matrix5.75E-03
39GO:0042651: thylakoid membrane8.40E-03
40GO:0016021: integral component of membrane8.53E-03
41GO:0005770: late endosome1.27E-02
42GO:0009707: chloroplast outer membrane2.31E-02
43GO:0031902: late endosome membrane3.09E-02
<
Gene type



Gene DE type