co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045730: respiratory burst	0.00E+00
2	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
3	GO:0018063: cytochrome c-heme linkage	0.00E+00
4	GO:0006005: L-fucose biosynthetic process	0.00E+00
5	GO:0009699: phenylpropanoid biosynthetic process	3.55E-07
6	GO:0009306: protein secretion	1.03E-05
7	GO:0006744: ubiquinone biosynthetic process	2.60E-05
8	GO:0017004: cytochrome complex assembly	4.37E-05
9	GO:0009808: lignin metabolic process	4.37E-05
10	GO:0003400: regulation of COPII vesicle coating	7.23E-05
11	GO:0080157: regulation of plant-type cell wall organization or biogenesis	7.23E-05
12	GO:0099636: cytoplasmic streaming	7.23E-05
13	GO:0042350: GDP-L-fucose biosynthetic process	7.23E-05
14	GO:0051014: actin filament severing	7.23E-05
15	GO:0071277: cellular response to calcium ion	7.23E-05
16	GO:0046244: salicylic acid catabolic process	7.23E-05
17	GO:0015865: purine nucleotide transport	1.74E-04
18	GO:0010155: regulation of proton transport	1.74E-04
19	GO:0010372: positive regulation of gibberellin biosynthetic process	1.74E-04
20	GO:0080167: response to karrikin	1.83E-04
21	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	2.93E-04
22	GO:0006065: UDP-glucuronate biosynthetic process	2.93E-04
23	GO:0052546: cell wall pectin metabolic process	2.93E-04
24	GO:0070475: rRNA base methylation	2.93E-04
25	GO:0006556: S-adenosylmethionine biosynthetic process	2.93E-04
26	GO:0009800: cinnamic acid biosynthetic process	4.23E-04
27	GO:0046902: regulation of mitochondrial membrane permeability	4.23E-04
28	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	4.23E-04
29	GO:0051131: chaperone-mediated protein complex assembly	4.23E-04
30	GO:1902347: response to strigolactone	5.65E-04
31	GO:0045227: capsule polysaccharide biosynthetic process	5.65E-04
32	GO:0051764: actin crosslink formation	5.65E-04
33	GO:0033358: UDP-L-arabinose biosynthetic process	5.65E-04
34	GO:0043484: regulation of RNA splicing	7.14E-04
35	GO:0009611: response to wounding	8.63E-04
36	GO:0033365: protein localization to organelle	8.73E-04
37	GO:0000470: maturation of LSU-rRNA	8.73E-04
38	GO:0006559: L-phenylalanine catabolic process	8.73E-04
39	GO:0009423: chorismate biosynthetic process	1.04E-03
40	GO:0098869: cellular oxidant detoxification	1.21E-03
41	GO:0051693: actin filament capping	1.21E-03
42	GO:0000338: protein deneddylation	1.21E-03
43	GO:0006402: mRNA catabolic process	1.40E-03
44	GO:0006605: protein targeting	1.40E-03
45	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.40E-03
46	GO:0009819: drought recovery	1.40E-03
47	GO:0010100: negative regulation of photomorphogenesis	1.59E-03
48	GO:0015996: chlorophyll catabolic process	1.59E-03
49	GO:0007338: single fertilization	1.80E-03
50	GO:0008202: steroid metabolic process	2.01E-03
51	GO:0030042: actin filament depolymerization	2.01E-03
52	GO:0009809: lignin biosynthetic process	2.02E-03
53	GO:0010224: response to UV-B	2.09E-03
54	GO:0019538: protein metabolic process	2.23E-03
55	GO:0009073: aromatic amino acid family biosynthetic process	2.46E-03
56	GO:0010015: root morphogenesis	2.46E-03
57	GO:0009698: phenylpropanoid metabolic process	2.46E-03
58	GO:0006913: nucleocytoplasmic transport	2.46E-03
59	GO:0015706: nitrate transport	2.70E-03
60	GO:0000266: mitochondrial fission	2.70E-03
61	GO:0046274: lignin catabolic process	2.94E-03
62	GO:0055046: microgametogenesis	2.94E-03
63	GO:0007015: actin filament organization	3.19E-03
64	GO:0006446: regulation of translational initiation	3.19E-03
65	GO:0034605: cellular response to heat	3.19E-03
66	GO:0002237: response to molecule of bacterial origin	3.19E-03
67	GO:0090351: seedling development	3.44E-03
68	GO:0009225: nucleotide-sugar metabolic process	3.44E-03
69	GO:0010167: response to nitrate	3.44E-03
70	GO:0009845: seed germination	3.86E-03
71	GO:0080147: root hair cell development	3.98E-03
72	GO:0051017: actin filament bundle assembly	3.98E-03
73	GO:0007010: cytoskeleton organization	3.98E-03
74	GO:0006418: tRNA aminoacylation for protein translation	4.26E-03
75	GO:0006810: transport	4.32E-03
76	GO:0003333: amino acid transmembrane transport	4.54E-03
77	GO:0048511: rhythmic process	4.54E-03
78	GO:0016036: cellular response to phosphate starvation	4.58E-03
79	GO:0006413: translational initiation	4.58E-03
80	GO:0006730: one-carbon metabolic process	4.83E-03
81	GO:0040007: growth	5.13E-03
82	GO:0006012: galactose metabolic process	5.13E-03
83	GO:0071215: cellular response to abscisic acid stimulus	5.13E-03
84	GO:0006817: phosphate ion transport	5.43E-03
85	GO:0009561: megagametogenesis	5.43E-03
86	GO:0006468: protein phosphorylation	5.57E-03
87	GO:0007166: cell surface receptor signaling pathway	5.61E-03
88	GO:0006606: protein import into nucleus	6.05E-03
89	GO:0042631: cellular response to water deprivation	6.05E-03
90	GO:0009741: response to brassinosteroid	6.38E-03
91	GO:0002229: defense response to oomycetes	7.38E-03
92	GO:0031047: gene silencing by RNA	7.72E-03
93	GO:0032502: developmental process	7.72E-03
94	GO:0009567: double fertilization forming a zygote and endosperm	8.43E-03
95	GO:0010286: heat acclimation	8.79E-03
96	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	9.92E-03
97	GO:0042128: nitrate assimilation	1.03E-02
98	GO:0048573: photoperiodism, flowering	1.07E-02
99	GO:0006888: ER to Golgi vesicle-mediated transport	1.07E-02
100	GO:0048767: root hair elongation	1.19E-02
101	GO:0006869: lipid transport	1.24E-02
102	GO:0006865: amino acid transport	1.32E-02
103	GO:0045087: innate immune response	1.36E-02
104	GO:0009408: response to heat	1.39E-02
105	GO:0006839: mitochondrial transport	1.49E-02
106	GO:0009753: response to jasmonic acid	1.50E-02
107	GO:0008283: cell proliferation	1.63E-02
108	GO:0009640: photomorphogenesis	1.63E-02
109	GO:0009965: leaf morphogenesis	1.77E-02
110	GO:0009664: plant-type cell wall organization	1.91E-02
111	GO:0009585: red, far-red light phototransduction	2.01E-02
112	GO:0006417: regulation of translation	2.16E-02
113	GO:0009626: plant-type hypersensitive response	2.37E-02
114	GO:0009620: response to fungus	2.42E-02
115	GO:0009416: response to light stimulus	2.48E-02
116	GO:0009555: pollen development	2.48E-02
117	GO:0042545: cell wall modification	2.53E-02
118	GO:0055085: transmembrane transport	3.14E-02
119	GO:0055114: oxidation-reduction process	3.19E-02
120	GO:0006457: protein folding	3.21E-02
121	GO:0042744: hydrogen peroxide catabolic process	3.32E-02
122	GO:0007623: circadian rhythm	3.81E-02
123	GO:0045490: pectin catabolic process	3.81E-02
124	GO:0042742: defense response to bacterium	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
4	GO:0005090: Sar guanyl-nucleotide exchange factor activity	7.23E-05
5	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	7.23E-05
6	GO:0050577: GDP-L-fucose synthase activity	7.23E-05
7	GO:0019784: NEDD8-specific protease activity	7.23E-05
8	GO:0032934: sterol binding	1.74E-04
9	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.93E-04
10	GO:0004478: methionine adenosyltransferase activity	2.93E-04
11	GO:0045548: phenylalanine ammonia-lyase activity	2.93E-04
12	GO:0005524: ATP binding	4.24E-04
13	GO:0000062: fatty-acyl-CoA binding	5.65E-04
14	GO:0050373: UDP-arabinose 4-epimerase activity	5.65E-04
15	GO:0047631: ADP-ribose diphosphatase activity	7.14E-04
16	GO:0005471: ATP:ADP antiporter activity	7.14E-04
17	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.46E-04
18	GO:0003729: mRNA binding	9.92E-04
19	GO:0004656: procollagen-proline 4-dioxygenase activity	1.04E-03
20	GO:0051020: GTPase binding	1.04E-03
21	GO:0004012: phospholipid-translocating ATPase activity	1.04E-03
22	GO:0003978: UDP-glucose 4-epimerase activity	1.04E-03
23	GO:0005515: protein binding	1.23E-03
24	GO:0052747: sinapyl alcohol dehydrogenase activity	1.40E-03
25	GO:0004564: beta-fructofuranosidase activity	1.40E-03
26	GO:0008142: oxysterol binding	1.59E-03
27	GO:0016207: 4-coumarate-CoA ligase activity	1.80E-03
28	GO:0015112: nitrate transmembrane transporter activity	2.01E-03
29	GO:0004575: sucrose alpha-glucosidase activity	2.01E-03
30	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.70E-03
31	GO:0008139: nuclear localization sequence binding	2.94E-03
32	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.94E-03
33	GO:0016301: kinase activity	3.22E-03
34	GO:0031418: L-ascorbic acid binding	3.98E-03
35	GO:0003743: translation initiation factor activity	5.73E-03
36	GO:0004812: aminoacyl-tRNA ligase activity	5.74E-03
37	GO:0008536: Ran GTPase binding	6.38E-03
38	GO:0001085: RNA polymerase II transcription factor binding	6.38E-03
39	GO:0050662: coenzyme binding	6.70E-03
40	GO:0016853: isomerase activity	6.70E-03
41	GO:0010181: FMN binding	6.70E-03
42	GO:0004518: nuclease activity	7.72E-03
43	GO:0004674: protein serine/threonine kinase activity	8.02E-03
44	GO:0051015: actin filament binding	8.07E-03
45	GO:0030247: polysaccharide binding	1.07E-02
46	GO:0005096: GTPase activator activity	1.19E-02
47	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.27E-02
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.27E-02
49	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.36E-02
50	GO:0051287: NAD binding	1.86E-02
51	GO:0020037: heme binding	2.02E-02
52	GO:0015171: amino acid transmembrane transporter activity	2.16E-02
53	GO:0045330: aspartyl esterase activity	2.16E-02
54	GO:0016874: ligase activity	2.47E-02
55	GO:0030599: pectinesterase activity	2.47E-02
56	GO:0003779: actin binding	2.53E-02
57	GO:0051082: unfolded protein binding	2.58E-02
58	GO:0008026: ATP-dependent helicase activity	2.69E-02
59	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.32E-02
60	GO:0030246: carbohydrate binding	3.33E-02
61	GO:0008565: protein transporter activity	3.44E-02
62	GO:0005507: copper ion binding	3.52E-02
63	GO:0046910: pectinesterase inhibitor activity	3.63E-02
64	GO:0042802: identical protein binding	4.52E-02
65	GO:0005506: iron ion binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005737: cytoplasm	4.46E-05
2	GO:0005886: plasma membrane	6.46E-05
3	GO:0016442: RISC complex	7.23E-05
4	GO:0030688: preribosome, small subunit precursor	7.23E-05
5	GO:0005829: cytosol	2.98E-04
6	GO:0005743: mitochondrial inner membrane	3.09E-04
7	GO:0016021: integral component of membrane	6.27E-04
8	GO:0005746: mitochondrial respiratory chain	7.14E-04
9	GO:0005789: endoplasmic reticulum membrane	1.04E-03
10	GO:0010369: chromocenter	1.04E-03
11	GO:0005730: nucleolus	1.24E-03
12	GO:0005783: endoplasmic reticulum	1.36E-03
13	GO:0008180: COP9 signalosome	1.80E-03
14	GO:0010494: cytoplasmic stress granule	1.80E-03
15	GO:0005740: mitochondrial envelope	2.23E-03
16	GO:0048471: perinuclear region of cytoplasm	2.46E-03
17	GO:0005884: actin filament	2.46E-03
18	GO:0009505: plant-type cell wall	3.39E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	3.44E-03
20	GO:0043234: protein complex	3.71E-03
21	GO:0005741: mitochondrial outer membrane	4.54E-03
22	GO:0005618: cell wall	5.49E-03
23	GO:0005770: late endosome	6.38E-03
24	GO:0031965: nuclear membrane	7.04E-03
25	GO:0071944: cell periphery	8.07E-03
26	GO:0032580: Golgi cisterna membrane	8.43E-03
27	GO:0000932: P-body	9.54E-03
28	GO:0005667: transcription factor complex	1.03E-02
29	GO:0005794: Golgi apparatus	1.05E-02
30	GO:0031902: late endosome membrane	1.54E-02
31	GO:0090406: pollen tube	1.63E-02
32	GO:0005856: cytoskeleton	1.77E-02
33	GO:0005635: nuclear envelope	2.11E-02
34	GO:0010008: endosome membrane	2.31E-02
35	GO:0005834: heterotrimeric G-protein complex	2.37E-02
36	GO:0005623: cell	3.09E-02
37	GO:0005802: trans-Golgi network	3.96E-02
38	GO:0009506: plasmodesma	4.28E-02
39	GO:0005622: intracellular	4.38E-02
40	GO:0005768: endosome	4.49E-02