co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048867: stem cell fate determination	0.00E+00
2	GO:0043462: regulation of ATPase activity	0.00E+00
3	GO:0055122: response to very low light intensity stimulus	0.00E+00
4	GO:0006005: L-fucose biosynthetic process	0.00E+00
5	GO:0006610: ribosomal protein import into nucleus	2.16E-07
6	GO:0000060: protein import into nucleus, translocation	1.00E-05
7	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.44E-05
8	GO:0006607: NLS-bearing protein import into nucleus	4.19E-05
9	GO:2000024: regulation of leaf development	4.19E-05
10	GO:0000469: cleavage involved in rRNA processing	6.10E-05
11	GO:0099636: cytoplasmic streaming	6.10E-05
12	GO:0019305: dTDP-rhamnose biosynthetic process	6.10E-05
13	GO:0043609: regulation of carbon utilization	6.10E-05
14	GO:0030490: maturation of SSU-rRNA	6.10E-05
15	GO:0042350: GDP-L-fucose biosynthetic process	6.10E-05
16	GO:1990641: response to iron ion starvation	6.10E-05
17	GO:0080173: male-female gamete recognition during double fertilization	6.10E-05
18	GO:1902182: shoot apical meristem development	6.10E-05
19	GO:0051014: actin filament severing	6.10E-05
20	GO:0006913: nucleocytoplasmic transport	7.32E-05
21	GO:0009073: aromatic amino acid family biosynthetic process	7.32E-05
22	GO:0006457: protein folding	1.36E-04
23	GO:0006364: rRNA processing	1.38E-04
24	GO:0009446: putrescine biosynthetic process	1.48E-04
25	GO:0080009: mRNA methylation	1.48E-04
26	GO:0031538: negative regulation of anthocyanin metabolic process	1.48E-04
27	GO:0031204: posttranslational protein targeting to membrane, translocation	1.48E-04
28	GO:0006527: arginine catabolic process	1.48E-04
29	GO:0051262: protein tetramerization	1.48E-04
30	GO:0019521: D-gluconate metabolic process	1.48E-04
31	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.48E-04
32	GO:0006101: citrate metabolic process	1.48E-04
33	GO:0016104: triterpenoid biosynthetic process	2.51E-04
34	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	2.51E-04
35	GO:0006517: protein deglycosylation	2.51E-04
36	GO:0001927: exocyst assembly	2.51E-04
37	GO:0006013: mannose metabolic process	2.51E-04
38	GO:0045604: regulation of epidermal cell differentiation	2.51E-04
39	GO:0010501: RNA secondary structure unwinding	3.11E-04
40	GO:0009793: embryo development ending in seed dormancy	3.21E-04
41	GO:0051601: exocyst localization	3.65E-04
42	GO:0043967: histone H4 acetylation	3.65E-04
43	GO:0007276: gamete generation	3.65E-04
44	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	3.65E-04
45	GO:0071329: cellular response to sucrose stimulus	3.65E-04
46	GO:0006413: translational initiation	4.23E-04
47	GO:0033320: UDP-D-xylose biosynthetic process	4.88E-04
48	GO:0051764: actin crosslink formation	4.88E-04
49	GO:0045723: positive regulation of fatty acid biosynthetic process	4.88E-04
50	GO:0008295: spermidine biosynthetic process	4.88E-04
51	GO:0006097: glyoxylate cycle	6.19E-04
52	GO:0016973: poly(A)+ mRNA export from nucleus	6.19E-04
53	GO:0006596: polyamine biosynthetic process	7.57E-04
54	GO:0043248: proteasome assembly	7.57E-04
55	GO:0042732: D-xylose metabolic process	7.57E-04
56	GO:0048444: floral organ morphogenesis	9.01E-04
57	GO:0010077: maintenance of inflorescence meristem identity	9.01E-04
58	GO:0015977: carbon fixation	9.01E-04
59	GO:0009423: chorismate biosynthetic process	9.01E-04
60	GO:0043966: histone H3 acetylation	9.01E-04
61	GO:0006099: tricarboxylic acid cycle	9.99E-04
62	GO:0006333: chromatin assembly or disassembly	1.05E-03
63	GO:0045995: regulation of embryonic development	1.05E-03
64	GO:0006368: transcription elongation from RNA polymerase II promoter	1.05E-03
65	GO:0051693: actin filament capping	1.05E-03
66	GO:0000338: protein deneddylation	1.05E-03
67	GO:0019745: pentacyclic triterpenoid biosynthetic process	1.05E-03
68	GO:0016192: vesicle-mediated transport	1.11E-03
69	GO:0000028: ribosomal small subunit assembly	1.21E-03
70	GO:0006102: isocitrate metabolic process	1.21E-03
71	GO:0010928: regulation of auxin mediated signaling pathway	1.21E-03
72	GO:0035265: organ growth	1.21E-03
73	GO:0006491: N-glycan processing	1.21E-03
74	GO:0006875: cellular metal ion homeostasis	1.21E-03
75	GO:0010100: negative regulation of photomorphogenesis	1.38E-03
76	GO:0006997: nucleus organization	1.38E-03
77	GO:0009880: embryonic pattern specification	1.38E-03
78	GO:0060321: acceptance of pollen	1.38E-03
79	GO:0006754: ATP biosynthetic process	1.55E-03
80	GO:0006098: pentose-phosphate shunt	1.55E-03
81	GO:0090332: stomatal closure	1.73E-03
82	GO:0030042: actin filament depolymerization	1.73E-03
83	GO:0006349: regulation of gene expression by genetic imprinting	1.73E-03
84	GO:0007064: mitotic sister chromatid cohesion	1.92E-03
85	GO:0009553: embryo sac development	2.23E-03
86	GO:0010152: pollen maturation	2.32E-03
87	GO:0007015: actin filament organization	2.74E-03
88	GO:0006446: regulation of translational initiation	2.74E-03
89	GO:0009225: nucleotide-sugar metabolic process	2.96E-03
90	GO:0046686: response to cadmium ion	3.34E-03
91	GO:0051017: actin filament bundle assembly	3.42E-03
92	GO:0006487: protein N-linked glycosylation	3.42E-03
93	GO:0007010: cytoskeleton organization	3.42E-03
94	GO:0010187: negative regulation of seed germination	3.42E-03
95	GO:0010073: meristem maintenance	3.65E-03
96	GO:0051302: regulation of cell division	3.65E-03
97	GO:0006874: cellular calcium ion homeostasis	3.65E-03
98	GO:0016036: cellular response to phosphate starvation	3.67E-03
99	GO:0098542: defense response to other organism	3.89E-03
100	GO:0009451: RNA modification	4.02E-03
101	GO:0008284: positive regulation of cell proliferation	4.92E-03
102	GO:0006606: protein import into nucleus	5.19E-03
103	GO:0006342: chromatin silencing	5.46E-03
104	GO:0009960: endosperm development	5.46E-03
105	GO:0009556: microsporogenesis	6.03E-03
106	GO:0048825: cotyledon development	6.03E-03
107	GO:0030163: protein catabolic process	6.91E-03
108	GO:0048366: leaf development	7.14E-03
109	GO:0006904: vesicle docking involved in exocytosis	7.52E-03
110	GO:0009615: response to virus	8.16E-03
111	GO:0009911: positive regulation of flower development	8.16E-03
112	GO:0006979: response to oxidative stress	8.60E-03
113	GO:0048573: photoperiodism, flowering	9.14E-03
114	GO:0048767: root hair elongation	1.02E-02
115	GO:0009651: response to salt stress	1.07E-02
116	GO:0009408: response to heat	1.11E-02
117	GO:0006887: exocytosis	1.31E-02
118	GO:0009640: photomorphogenesis	1.39E-02
119	GO:0008283: cell proliferation	1.39E-02
120	GO:0009846: pollen germination	1.63E-02
121	GO:0042538: hyperosmotic salinity response	1.63E-02
122	GO:0009585: red, far-red light phototransduction	1.71E-02
123	GO:0009909: regulation of flower development	1.84E-02
124	GO:0006096: glycolytic process	1.93E-02
125	GO:0048316: seed development	1.97E-02
126	GO:0051301: cell division	2.16E-02
127	GO:0006396: RNA processing	2.25E-02
128	GO:0010228: vegetative to reproductive phase transition of meristem	3.36E-02
129	GO:0010468: regulation of gene expression	3.68E-02

Rank	GO Term	Adjusted P value
1	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0030515: snoRNA binding	1.98E-05
4	GO:0004004: ATP-dependent RNA helicase activity	3.60E-05
5	GO:0008792: arginine decarboxylase activity	6.10E-05
6	GO:0050577: GDP-L-fucose synthase activity	6.10E-05
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.10E-05
8	GO:0019784: NEDD8-specific protease activity	6.10E-05
9	GO:0000166: nucleotide binding	7.92E-05
10	GO:0008139: nuclear localization sequence binding	9.94E-05
11	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.48E-04
12	GO:0043021: ribonucleoprotein complex binding	1.48E-04
13	GO:0003994: aconitate hydratase activity	1.48E-04
14	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.48E-04
15	GO:0008026: ATP-dependent helicase activity	2.45E-04
16	GO:0042300: beta-amyrin synthase activity	2.51E-04
17	GO:0019829: cation-transporting ATPase activity	2.51E-04
18	GO:0008964: phosphoenolpyruvate carboxylase activity	2.51E-04
19	GO:0004386: helicase activity	2.54E-04
20	GO:0003723: RNA binding	2.85E-04
21	GO:0042299: lupeol synthase activity	3.65E-04
22	GO:0008565: protein transporter activity	3.86E-04
23	GO:0000993: RNA polymerase II core binding	4.88E-04
24	GO:0005515: protein binding	4.99E-04
25	GO:0003743: translation initiation factor activity	5.64E-04
26	GO:0002020: protease binding	6.19E-04
27	GO:0048040: UDP-glucuronate decarboxylase activity	7.57E-04
28	GO:0031369: translation initiation factor binding	7.57E-04
29	GO:0004559: alpha-mannosidase activity	9.01E-04
30	GO:0070403: NAD+ binding	9.01E-04
31	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	9.01E-04
32	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.55E-03
33	GO:0031490: chromatin DNA binding	1.73E-03
34	GO:0030955: potassium ion binding	1.73E-03
35	GO:0004743: pyruvate kinase activity	1.73E-03
36	GO:0001054: RNA polymerase I activity	2.12E-03
37	GO:0004521: endoribonuclease activity	2.32E-03
38	GO:0031072: heat shock protein binding	2.52E-03
39	GO:0005388: calcium-transporting ATPase activity	2.52E-03
40	GO:0004535: poly(A)-specific ribonuclease activity	2.74E-03
41	GO:0003729: mRNA binding	3.12E-03
42	GO:0043130: ubiquitin binding	3.42E-03
43	GO:0004540: ribonuclease activity	3.89E-03
44	GO:0016779: nucleotidyltransferase activity	4.15E-03
45	GO:0004402: histone acetyltransferase activity	5.19E-03
46	GO:0003713: transcription coactivator activity	5.46E-03
47	GO:0030276: clathrin binding	5.46E-03
48	GO:0008536: Ran GTPase binding	5.46E-03
49	GO:0016853: isomerase activity	5.74E-03
50	GO:0010181: FMN binding	5.74E-03
51	GO:0050662: coenzyme binding	5.74E-03
52	GO:0005524: ATP binding	6.59E-03
53	GO:0051015: actin filament binding	6.91E-03
54	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	9.47E-03
55	GO:0005096: GTPase activator activity	1.02E-02
56	GO:0042393: histone binding	1.27E-02
57	GO:0051539: 4 iron, 4 sulfur cluster binding	1.27E-02
58	GO:0005198: structural molecule activity	1.51E-02
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.71E-02
60	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.06E-02
61	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.06E-02
62	GO:0003779: actin binding	2.15E-02
63	GO:0051082: unfolded protein binding	2.20E-02
64	GO:0016829: lyase activity	2.73E-02
65	GO:0005525: GTP binding	3.25E-02
66	GO:0008194: UDP-glycosyltransferase activity	3.52E-02
67	GO:0000287: magnesium ion binding	4.37E-02
68	GO:0003682: chromatin binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0036396: MIS complex	0.00E+00
4	GO:0005829: cytosol	1.10E-11
5	GO:0034399: nuclear periphery	1.59E-07
6	GO:0031965: nuclear membrane	1.34E-05
7	GO:0030688: preribosome, small subunit precursor	6.10E-05
8	GO:0008023: transcription elongation factor complex	6.10E-05
9	GO:0032040: small-subunit processome	8.59E-05
10	GO:0070545: PeBoW complex	1.48E-04
11	GO:0030089: phycobilisome	1.48E-04
12	GO:0005730: nucleolus	1.61E-04
13	GO:0005737: cytoplasm	1.71E-04
14	GO:0030124: AP-4 adaptor complex	2.51E-04
15	GO:0033588: Elongator holoenzyme complex	3.65E-04
16	GO:0000145: exocyst	4.41E-04
17	GO:0005643: nuclear pore	7.65E-04
18	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.96E-04
19	GO:0009506: plasmodesma	1.05E-03
20	GO:0030687: preribosome, large subunit precursor	1.05E-03
21	GO:0000123: histone acetyltransferase complex	1.05E-03
22	GO:0031982: vesicle	1.21E-03
23	GO:0005856: cytoskeleton	1.36E-03
24	GO:0005736: DNA-directed RNA polymerase I complex	1.55E-03
25	GO:0008180: COP9 signalosome	1.55E-03
26	GO:0005635: nuclear envelope	1.74E-03
27	GO:0048471: perinuclear region of cytoplasm	2.12E-03
28	GO:0005852: eukaryotic translation initiation factor 3 complex	2.12E-03
29	GO:0008541: proteasome regulatory particle, lid subcomplex	2.12E-03
30	GO:0005884: actin filament	2.12E-03
31	GO:0030176: integral component of endoplasmic reticulum membrane	2.96E-03
32	GO:0009524: phragmoplast	3.01E-03
33	GO:0043234: protein complex	3.18E-03
34	GO:0005905: clathrin-coated pit	3.89E-03
35	GO:0005802: trans-Golgi network	6.32E-03
36	GO:0005794: Golgi apparatus	6.38E-03
37	GO:0000785: chromatin	6.61E-03
38	GO:0009507: chloroplast	6.62E-03
39	GO:0032580: Golgi cisterna membrane	7.21E-03
40	GO:0005768: endosome	7.44E-03
41	GO:0009536: plastid	1.10E-02
42	GO:0005819: spindle	1.23E-02
43	GO:0005618: cell wall	1.37E-02
44	GO:0000502: proteasome complex	1.71E-02
45	GO:0016607: nuclear speck	1.97E-02
46	GO:0005623: cell	2.63E-02
47	GO:0005783: endoplasmic reticulum	3.19E-02
48	GO:0005622: intracellular	3.51E-02
49	GO:0005634: nucleus	3.54E-02
50	GO:0005774: vacuolar membrane	4.06E-02