co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016118: carotenoid catabolic process	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0015979: photosynthesis	8.84E-24
10	GO:0009768: photosynthesis, light harvesting in photosystem I	3.57E-14
11	GO:0009773: photosynthetic electron transport in photosystem I	1.16E-13
12	GO:0018298: protein-chromophore linkage	2.73E-11
13	GO:0009645: response to low light intensity stimulus	7.43E-11
14	GO:0010027: thylakoid membrane organization	4.78E-10
15	GO:0042549: photosystem II stabilization	3.80E-09
16	GO:0009644: response to high light intensity	1.15E-08
17	GO:0010196: nonphotochemical quenching	1.66E-08
18	GO:0019684: photosynthesis, light reaction	2.68E-07
19	GO:0005983: starch catabolic process	3.75E-07
20	GO:0010207: photosystem II assembly	6.85E-07
21	GO:0009409: response to cold	1.91E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-06
23	GO:0035304: regulation of protein dephosphorylation	2.28E-06
24	GO:0009769: photosynthesis, light harvesting in photosystem II	2.39E-06
25	GO:0032544: plastid translation	5.32E-06
26	GO:0010206: photosystem II repair	7.45E-06
27	GO:0006000: fructose metabolic process	8.31E-06
28	GO:0010205: photoinhibition	1.01E-05
29	GO:0009735: response to cytokinin	1.15E-05
30	GO:0010021: amylopectin biosynthetic process	3.46E-05
31	GO:0006109: regulation of carbohydrate metabolic process	3.46E-05
32	GO:0010218: response to far red light	4.98E-05
33	GO:0010114: response to red light	1.04E-04
34	GO:0046520: sphingoid biosynthetic process	2.20E-04
35	GO:0080093: regulation of photorespiration	2.20E-04
36	GO:0043007: maintenance of rDNA	2.20E-04
37	GO:0031998: regulation of fatty acid beta-oxidation	2.20E-04
38	GO:0000023: maltose metabolic process	2.20E-04
39	GO:0000025: maltose catabolic process	2.20E-04
40	GO:0009657: plastid organization	2.36E-04
41	GO:0006002: fructose 6-phosphate metabolic process	2.36E-04
42	GO:0015995: chlorophyll biosynthetic process	4.37E-04
43	GO:0043085: positive regulation of catalytic activity	4.63E-04
44	GO:0016124: xanthophyll catabolic process	4.90E-04
45	GO:0005976: polysaccharide metabolic process	4.90E-04
46	GO:0018026: peptidyl-lysine monomethylation	4.90E-04
47	GO:0031648: protein destabilization	4.90E-04
48	GO:0006729: tetrahydrobiopterin biosynthetic process	4.90E-04
49	GO:0016121: carotene catabolic process	4.90E-04
50	GO:0006094: gluconeogenesis	6.01E-04
51	GO:0005986: sucrose biosynthetic process	6.01E-04
52	GO:0009637: response to blue light	6.73E-04
53	GO:0034599: cellular response to oxidative stress	7.13E-04
54	GO:0090391: granum assembly	7.98E-04
55	GO:0006518: peptide metabolic process	7.98E-04
56	GO:0035436: triose phosphate transmembrane transport	7.98E-04
57	GO:0016050: vesicle organization	7.98E-04
58	GO:1902448: positive regulation of shade avoidance	7.98E-04
59	GO:0061077: chaperone-mediated protein folding	1.12E-03
60	GO:0009269: response to desiccation	1.12E-03
61	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.14E-03
62	GO:0071484: cellular response to light intensity	1.14E-03
63	GO:0006412: translation	1.16E-03
64	GO:0009658: chloroplast organization	1.43E-03
65	GO:0042254: ribosome biogenesis	1.47E-03
66	GO:0006546: glycine catabolic process	1.51E-03
67	GO:0015713: phosphoglycerate transport	1.51E-03
68	GO:0006021: inositol biosynthetic process	1.51E-03
69	GO:0015976: carbon utilization	1.51E-03
70	GO:0019464: glycine decarboxylation via glycine cleavage system	1.51E-03
71	GO:0009765: photosynthesis, light harvesting	1.51E-03
72	GO:0045727: positive regulation of translation	1.51E-03
73	GO:0015994: chlorophyll metabolic process	1.51E-03
74	GO:0010600: regulation of auxin biosynthetic process	1.51E-03
75	GO:0030104: water homeostasis	1.51E-03
76	GO:0006662: glycerol ether metabolic process	1.81E-03
77	GO:0006097: glyoxylate cycle	1.93E-03
78	GO:0035434: copper ion transmembrane transport	1.93E-03
79	GO:0006461: protein complex assembly	1.93E-03
80	GO:0019252: starch biosynthetic process	2.09E-03
81	GO:0042742: defense response to bacterium	2.12E-03
82	GO:0009416: response to light stimulus	2.15E-03
83	GO:0010190: cytochrome b6f complex assembly	2.38E-03
84	GO:0009635: response to herbicide	2.38E-03
85	GO:0009643: photosynthetic acclimation	2.38E-03
86	GO:0050665: hydrogen peroxide biosynthetic process	2.38E-03
87	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.38E-03
88	GO:0000470: maturation of LSU-rRNA	2.38E-03
89	GO:0045454: cell redox homeostasis	2.61E-03
90	GO:1901259: chloroplast rRNA processing	2.86E-03
91	GO:0009854: oxidative photosynthetic carbon pathway	2.86E-03
92	GO:0009955: adaxial/abaxial pattern specification	2.86E-03
93	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.86E-03
94	GO:0010161: red light signaling pathway	3.36E-03
95	GO:0009704: de-etiolation	3.90E-03
96	GO:0010928: regulation of auxin mediated signaling pathway	3.90E-03
97	GO:0005978: glycogen biosynthetic process	3.90E-03
98	GO:0009642: response to light intensity	3.90E-03
99	GO:0016311: dephosphorylation	3.98E-03
100	GO:0017004: cytochrome complex assembly	4.47E-03
101	GO:0006810: transport	4.53E-03
102	GO:0090333: regulation of stomatal closure	5.06E-03
103	GO:0051865: protein autoubiquitination	5.06E-03
104	GO:0005982: starch metabolic process	5.68E-03
105	GO:0048829: root cap development	6.32E-03
106	GO:0031627: telomeric loop formation	6.32E-03
107	GO:0009640: photomorphogenesis	6.83E-03
108	GO:0009089: lysine biosynthetic process via diaminopimelate	6.98E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	6.98E-03
110	GO:0006415: translational termination	6.98E-03
111	GO:0000272: polysaccharide catabolic process	6.98E-03
112	GO:0009750: response to fructose	6.98E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	6.98E-03
114	GO:0009698: phenylpropanoid metabolic process	6.98E-03
115	GO:0045037: protein import into chloroplast stroma	7.68E-03
116	GO:0010628: positive regulation of gene expression	8.39E-03
117	GO:0006108: malate metabolic process	8.39E-03
118	GO:0019253: reductive pentose-phosphate cycle	9.13E-03
119	GO:0006302: double-strand break repair	9.13E-03
120	GO:0006364: rRNA processing	9.22E-03
121	GO:0080167: response to karrikin	9.58E-03
122	GO:0005985: sucrose metabolic process	9.90E-03
123	GO:0090351: seedling development	9.90E-03
124	GO:0006636: unsaturated fatty acid biosynthetic process	1.07E-02
125	GO:0043086: negative regulation of catalytic activity	1.09E-02
126	GO:0000027: ribosomal large subunit assembly	1.15E-02
127	GO:0007017: microtubule-based process	1.23E-02
128	GO:0006825: copper ion transport	1.23E-02
129	GO:0051321: meiotic cell cycle	1.32E-02
130	GO:0019915: lipid storage	1.32E-02
131	GO:0035428: hexose transmembrane transport	1.40E-02
132	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.40E-02
133	GO:0010017: red or far-red light signaling pathway	1.40E-02
134	GO:0071215: cellular response to abscisic acid stimulus	1.49E-02
135	GO:0005975: carbohydrate metabolic process	1.53E-02
136	GO:0006284: base-excision repair	1.58E-02
137	GO:0009561: megagametogenesis	1.58E-02
138	GO:0055114: oxidation-reduction process	1.66E-02
139	GO:0042631: cellular response to water deprivation	1.77E-02
140	GO:0046323: glucose import	1.87E-02
141	GO:0009790: embryo development	1.93E-02
142	GO:0006814: sodium ion transport	1.97E-02
143	GO:0008654: phospholipid biosynthetic process	2.07E-02
144	GO:0000302: response to reactive oxygen species	2.17E-02
145	GO:0071554: cell wall organization or biogenesis	2.17E-02
146	GO:0048235: pollen sperm cell differentiation	2.28E-02
147	GO:1901657: glycosyl compound metabolic process	2.38E-02
148	GO:0006979: response to oxidative stress	2.50E-02
149	GO:0051607: defense response to virus	2.71E-02
150	GO:0009793: embryo development ending in seed dormancy	3.11E-02
151	GO:0048573: photoperiodism, flowering	3.17E-02
152	GO:0009813: flavonoid biosynthetic process	3.53E-02
153	GO:0009834: plant-type secondary cell wall biogenesis	3.66E-02
154	GO:0010119: regulation of stomatal movement	3.78E-02
155	GO:0006099: tricarboxylic acid cycle	4.16E-02
156	GO:0055085: transmembrane transport	4.33E-02
157	GO:0006631: fatty acid metabolic process	4.56E-02
158	GO:0042542: response to hydrogen peroxide	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
8	GO:0010242: oxygen evolving activity	0.00E+00
9	GO:0031409: pigment binding	1.30E-14
10	GO:0016168: chlorophyll binding	1.69E-13
11	GO:0019843: rRNA binding	3.38E-10
12	GO:0010297: heteropolysaccharide binding	2.28E-06
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-06
14	GO:0008266: poly(U) RNA binding	3.31E-05
15	GO:0003735: structural constituent of ribosome	5.86E-05
16	GO:2001070: starch binding	8.18E-05
17	GO:0004134: 4-alpha-glucanotransferase activity	2.20E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	2.20E-04
19	GO:0019203: carbohydrate phosphatase activity	2.20E-04
20	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.20E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.20E-04
22	GO:0000170: sphingosine hydroxylase activity	2.20E-04
23	GO:0050308: sugar-phosphatase activity	2.20E-04
24	GO:0008047: enzyme activator activity	4.00E-04
25	GO:0004512: inositol-3-phosphate synthase activity	4.90E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.90E-04
27	GO:0008967: phosphoglycolate phosphatase activity	4.90E-04
28	GO:0047746: chlorophyllase activity	4.90E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	4.90E-04
30	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.90E-04
31	GO:0042284: sphingolipid delta-4 desaturase activity	4.90E-04
32	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.90E-04
33	GO:0031072: heat shock protein binding	6.01E-04
34	GO:0004565: beta-galactosidase activity	6.01E-04
35	GO:0071917: triose-phosphate transmembrane transporter activity	7.98E-04
36	GO:0043169: cation binding	7.98E-04
37	GO:0004373: glycogen (starch) synthase activity	7.98E-04
38	GO:0005504: fatty acid binding	7.98E-04
39	GO:0004857: enzyme inhibitor activity	9.27E-04
40	GO:0005528: FK506 binding	9.27E-04
41	GO:0016149: translation release factor activity, codon specific	1.14E-03
42	GO:0016851: magnesium chelatase activity	1.14E-03
43	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.14E-03
44	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.14E-03
45	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.14E-03
46	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.14E-03
47	GO:0022891: substrate-specific transmembrane transporter activity	1.33E-03
48	GO:0009011: starch synthase activity	1.51E-03
49	GO:0008891: glycolate oxidase activity	1.51E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	1.51E-03
51	GO:0016279: protein-lysine N-methyltransferase activity	1.51E-03
52	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.51E-03
53	GO:0045430: chalcone isomerase activity	1.51E-03
54	GO:0047134: protein-disulfide reductase activity	1.56E-03
55	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.93E-03
56	GO:0008725: DNA-3-methyladenine glycosylase activity	1.93E-03
57	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-03
58	GO:0016615: malate dehydrogenase activity	2.38E-03
59	GO:0004130: cytochrome-c peroxidase activity	2.38E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.54E-03
61	GO:0030060: L-malate dehydrogenase activity	2.86E-03
62	GO:0004033: aldo-keto reductase (NADP) activity	3.90E-03
63	GO:0005337: nucleoside transmembrane transporter activity	3.90E-03
64	GO:0005375: copper ion transmembrane transporter activity	4.47E-03
65	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.06E-03
66	GO:0003747: translation release factor activity	5.06E-03
67	GO:0005515: protein binding	6.24E-03
68	GO:0005509: calcium ion binding	6.43E-03
69	GO:0003691: double-stranded telomeric DNA binding	6.98E-03
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.98E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	8.39E-03
72	GO:0004089: carbonate dehydratase activity	8.39E-03
73	GO:0003712: transcription cofactor activity	9.90E-03
74	GO:0016491: oxidoreductase activity	1.19E-02
75	GO:0003964: RNA-directed DNA polymerase activity	1.32E-02
76	GO:0051082: unfolded protein binding	1.32E-02
77	GO:0008408: 3'-5' exonuclease activity	1.32E-02
78	GO:0015035: protein disulfide oxidoreductase activity	1.35E-02
79	GO:0046872: metal ion binding	1.46E-02
80	GO:0008514: organic anion transmembrane transporter activity	1.58E-02
81	GO:0003756: protein disulfide isomerase activity	1.58E-02
82	GO:0010181: FMN binding	1.97E-02
83	GO:0050662: coenzyme binding	1.97E-02
84	GO:0005355: glucose transmembrane transporter activity	1.97E-02
85	GO:0015144: carbohydrate transmembrane transporter activity	1.98E-02
86	GO:0048038: quinone binding	2.17E-02
87	GO:0005351: sugar:proton symporter activity	2.23E-02
88	GO:0005200: structural constituent of cytoskeleton	2.60E-02
89	GO:0016413: O-acetyltransferase activity	2.71E-02
90	GO:0016787: hydrolase activity	2.73E-02
91	GO:0102483: scopolin beta-glucosidase activity	3.17E-02
92	GO:0000287: magnesium ion binding	3.46E-02
93	GO:0004222: metalloendopeptidase activity	3.66E-02
94	GO:0030145: manganese ion binding	3.78E-02
95	GO:0003993: acid phosphatase activity	4.16E-02
96	GO:0008422: beta-glucosidase activity	4.30E-02
97	GO:0004185: serine-type carboxypeptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009507: chloroplast	1.20E-63
4	GO:0009534: chloroplast thylakoid	1.60E-60
5	GO:0009535: chloroplast thylakoid membrane	2.31E-52
6	GO:0009579: thylakoid	1.93E-34
7	GO:0009941: chloroplast envelope	2.23E-31
8	GO:0009570: chloroplast stroma	2.66E-25
9	GO:0010287: plastoglobule	5.81E-20
10	GO:0009543: chloroplast thylakoid lumen	4.47E-18
11	GO:0009522: photosystem I	9.28E-15
12	GO:0030095: chloroplast photosystem II	6.67E-13
13	GO:0030076: light-harvesting complex	1.10E-12
14	GO:0031977: thylakoid lumen	3.61E-12
15	GO:0009523: photosystem II	8.54E-11
16	GO:0009654: photosystem II oxygen evolving complex	3.17E-08
17	GO:0005840: ribosome	5.85E-08
18	GO:0009517: PSII associated light-harvesting complex II	1.89E-07
19	GO:0019898: extrinsic component of membrane	2.63E-07
20	GO:0030093: chloroplast photosystem I	2.28E-06
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.45E-06
22	GO:0016020: membrane	9.93E-06
23	GO:0009508: plastid chromosome	2.71E-05
24	GO:0009706: chloroplast inner membrane	3.25E-05
25	GO:0055035: plastid thylakoid membrane	5.56E-05
26	GO:0042651: thylakoid membrane	6.57E-05
27	GO:0048046: apoplast	1.23E-04
28	GO:0009501: amyloplast	1.91E-04
29	GO:0009538: photosystem I reaction center	1.91E-04
30	GO:0009515: granal stacked thylakoid	2.20E-04
31	GO:0009782: photosystem I antenna complex	2.20E-04
32	GO:0000791: euchromatin	2.20E-04
33	GO:0009783: photosystem II antenna complex	2.20E-04
34	GO:0010319: stromule	3.03E-04
35	GO:0009295: nucleoid	3.03E-04
36	GO:0030870: Mre11 complex	4.90E-04
37	GO:0043036: starch grain	4.90E-04
38	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.90E-04
39	GO:0010007: magnesium chelatase complex	7.98E-04
40	GO:0005960: glycine cleavage complex	1.14E-03
41	GO:0016021: integral component of membrane	1.63E-03
42	GO:0000795: synaptonemal complex	1.93E-03
43	GO:0005623: cell	2.87E-03
44	GO:0009533: chloroplast stromal thylakoid	3.36E-03
45	GO:0000783: nuclear telomere cap complex	4.47E-03
46	GO:0045298: tubulin complex	5.06E-03
47	GO:0005763: mitochondrial small ribosomal subunit	5.06E-03
48	GO:0005773: vacuole	8.59E-03
49	GO:0031969: chloroplast membrane	9.58E-03
50	GO:0000785: chromatin	2.28E-02
51	GO:0015934: large ribosomal subunit	3.78E-02
52	GO:0005777: peroxisome	3.83E-02
53	GO:0022625: cytosolic large ribosomal subunit	4.58E-02