GO Enrichment Analysis of Co-expressed Genes with
AT5G56350
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080052: response to histidine | 0.00E+00 |
| 2 | GO:0080053: response to phenylalanine | 0.00E+00 |
| 3 | GO:0033587: shikimate biosynthetic process | 0.00E+00 |
| 4 | GO:0048867: stem cell fate determination | 0.00E+00 |
| 5 | GO:0006858: extracellular transport | 0.00E+00 |
| 6 | GO:0043201: response to leucine | 0.00E+00 |
| 7 | GO:0009423: chorismate biosynthetic process | 2.38E-07 |
| 8 | GO:0046686: response to cadmium ion | 2.58E-07 |
| 9 | GO:0006413: translational initiation | 3.97E-07 |
| 10 | GO:0009073: aromatic amino acid family biosynthetic process | 3.07E-06 |
| 11 | GO:0006099: tricarboxylic acid cycle | 9.50E-06 |
| 12 | GO:0006098: pentose-phosphate shunt | 9.74E-05 |
| 13 | GO:0006007: glucose catabolic process | 1.06E-04 |
| 14 | GO:0002143: tRNA wobble position uridine thiolation | 1.06E-04 |
| 15 | GO:0009968: negative regulation of signal transduction | 1.06E-04 |
| 16 | GO:0043609: regulation of carbon utilization | 1.06E-04 |
| 17 | GO:0080120: CAAX-box protein maturation | 1.06E-04 |
| 18 | GO:0006430: lysyl-tRNA aminoacylation | 1.06E-04 |
| 19 | GO:0071586: CAAX-box protein processing | 1.06E-04 |
| 20 | GO:0043547: positive regulation of GTPase activity | 1.06E-04 |
| 21 | GO:0080173: male-female gamete recognition during double fertilization | 1.06E-04 |
| 22 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.48E-04 |
| 23 | GO:0042939: tripeptide transport | 2.48E-04 |
| 24 | GO:0030187: melatonin biosynthetic process | 2.48E-04 |
| 25 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 2.48E-04 |
| 26 | GO:0080009: mRNA methylation | 2.48E-04 |
| 27 | GO:0031538: negative regulation of anthocyanin metabolic process | 2.48E-04 |
| 28 | GO:0031204: posttranslational protein targeting to membrane, translocation | 2.48E-04 |
| 29 | GO:0009805: coumarin biosynthetic process | 2.48E-04 |
| 30 | GO:0051262: protein tetramerization | 2.48E-04 |
| 31 | GO:0019521: D-gluconate metabolic process | 2.48E-04 |
| 32 | GO:0019632: shikimate metabolic process | 2.48E-04 |
| 33 | GO:0009809: lignin biosynthetic process | 3.76E-04 |
| 34 | GO:0006421: asparaginyl-tRNA aminoacylation | 4.12E-04 |
| 35 | GO:0006556: S-adenosylmethionine biosynthetic process | 4.12E-04 |
| 36 | GO:0006886: intracellular protein transport | 5.86E-04 |
| 37 | GO:0071329: cellular response to sucrose stimulus | 5.92E-04 |
| 38 | GO:0072583: clathrin-dependent endocytosis | 5.92E-04 |
| 39 | GO:0010731: protein glutathionylation | 5.92E-04 |
| 40 | GO:0043967: histone H4 acetylation | 5.92E-04 |
| 41 | GO:0001676: long-chain fatty acid metabolic process | 5.92E-04 |
| 42 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 5.92E-04 |
| 43 | GO:2000114: regulation of establishment of cell polarity | 5.92E-04 |
| 44 | GO:0042938: dipeptide transport | 7.86E-04 |
| 45 | GO:0009651: response to salt stress | 8.72E-04 |
| 46 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 1.21E-03 |
| 47 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 1.21E-03 |
| 48 | GO:0043248: proteasome assembly | 1.21E-03 |
| 49 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.21E-03 |
| 50 | GO:0009737: response to abscisic acid | 1.23E-03 |
| 51 | GO:0007166: cell surface receptor signaling pathway | 1.37E-03 |
| 52 | GO:0000054: ribosomal subunit export from nucleus | 1.45E-03 |
| 53 | GO:0043966: histone H3 acetylation | 1.45E-03 |
| 54 | GO:0015977: carbon fixation | 1.45E-03 |
| 55 | GO:0000911: cytokinesis by cell plate formation | 1.45E-03 |
| 56 | GO:1902074: response to salt | 1.70E-03 |
| 57 | GO:0006368: transcription elongation from RNA polymerase II promoter | 1.70E-03 |
| 58 | GO:0048766: root hair initiation | 1.97E-03 |
| 59 | GO:0006875: cellular metal ion homeostasis | 1.97E-03 |
| 60 | GO:0006102: isocitrate metabolic process | 1.97E-03 |
| 61 | GO:0010928: regulation of auxin mediated signaling pathway | 1.97E-03 |
| 62 | GO:0035265: organ growth | 1.97E-03 |
| 63 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.97E-03 |
| 64 | GO:0022900: electron transport chain | 2.24E-03 |
| 65 | GO:2000024: regulation of leaf development | 2.53E-03 |
| 66 | GO:0006754: ATP biosynthetic process | 2.53E-03 |
| 67 | GO:0016192: vesicle-mediated transport | 2.80E-03 |
| 68 | GO:0009846: pollen germination | 3.12E-03 |
| 69 | GO:0006032: chitin catabolic process | 3.15E-03 |
| 70 | GO:0051555: flavonol biosynthetic process | 3.15E-03 |
| 71 | GO:0006415: translational termination | 3.47E-03 |
| 72 | GO:0006352: DNA-templated transcription, initiation | 3.47E-03 |
| 73 | GO:0010152: pollen maturation | 3.81E-03 |
| 74 | GO:0000266: mitochondrial fission | 3.81E-03 |
| 75 | GO:0006096: glycolytic process | 3.95E-03 |
| 76 | GO:0006108: malate metabolic process | 4.16E-03 |
| 77 | GO:0055046: microgametogenesis | 4.16E-03 |
| 78 | GO:0034976: response to endoplasmic reticulum stress | 5.26E-03 |
| 79 | GO:0009793: embryo development ending in seed dormancy | 5.34E-03 |
| 80 | GO:0080147: root hair cell development | 5.65E-03 |
| 81 | GO:0010073: meristem maintenance | 6.05E-03 |
| 82 | GO:0006874: cellular calcium ion homeostasis | 6.05E-03 |
| 83 | GO:0016226: iron-sulfur cluster assembly | 6.87E-03 |
| 84 | GO:0006730: one-carbon metabolic process | 6.87E-03 |
| 85 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.87E-03 |
| 86 | GO:0080092: regulation of pollen tube growth | 6.87E-03 |
| 87 | GO:0009693: ethylene biosynthetic process | 7.30E-03 |
| 88 | GO:0016036: cellular response to phosphate starvation | 7.64E-03 |
| 89 | GO:0009561: megagametogenesis | 7.74E-03 |
| 90 | GO:0010091: trichome branching | 7.74E-03 |
| 91 | GO:0042127: regulation of cell proliferation | 7.74E-03 |
| 92 | GO:0009735: response to cytokinin | 7.96E-03 |
| 93 | GO:0008284: positive regulation of cell proliferation | 8.19E-03 |
| 94 | GO:0010150: leaf senescence | 8.20E-03 |
| 95 | GO:0010501: RNA secondary structure unwinding | 8.64E-03 |
| 96 | GO:0010051: xylem and phloem pattern formation | 8.64E-03 |
| 97 | GO:0010118: stomatal movement | 8.64E-03 |
| 98 | GO:0015991: ATP hydrolysis coupled proton transport | 8.64E-03 |
| 99 | GO:0009555: pollen development | 8.91E-03 |
| 100 | GO:0010197: polar nucleus fusion | 9.10E-03 |
| 101 | GO:0010182: sugar mediated signaling pathway | 9.10E-03 |
| 102 | GO:0009749: response to glucose | 1.01E-02 |
| 103 | GO:0010183: pollen tube guidance | 1.01E-02 |
| 104 | GO:0010193: response to ozone | 1.06E-02 |
| 105 | GO:0071554: cell wall organization or biogenesis | 1.06E-02 |
| 106 | GO:0071281: cellular response to iron ion | 1.16E-02 |
| 107 | GO:0030163: protein catabolic process | 1.16E-02 |
| 108 | GO:0006457: protein folding | 1.24E-02 |
| 109 | GO:0006904: vesicle docking involved in exocytosis | 1.26E-02 |
| 110 | GO:0009860: pollen tube growth | 1.37E-02 |
| 111 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.42E-02 |
| 112 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.54E-02 |
| 113 | GO:0006839: mitochondrial transport | 2.14E-02 |
| 114 | GO:0006887: exocytosis | 2.21E-02 |
| 115 | GO:0006897: endocytosis | 2.21E-02 |
| 116 | GO:0006631: fatty acid metabolic process | 2.21E-02 |
| 117 | GO:0032259: methylation | 2.23E-02 |
| 118 | GO:0008283: cell proliferation | 2.34E-02 |
| 119 | GO:0009640: photomorphogenesis | 2.34E-02 |
| 120 | GO:0000209: protein polyubiquitination | 2.41E-02 |
| 121 | GO:0009753: response to jasmonic acid | 2.50E-02 |
| 122 | GO:0008152: metabolic process | 2.57E-02 |
| 123 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.68E-02 |
| 124 | GO:0042538: hyperosmotic salinity response | 2.75E-02 |
| 125 | GO:0006857: oligopeptide transport | 3.04E-02 |
| 126 | GO:0006417: regulation of translation | 3.11E-02 |
| 127 | GO:0009553: embryo sac development | 3.64E-02 |
| 128 | GO:0005975: carbohydrate metabolic process | 3.66E-02 |
| 129 | GO:0009738: abscisic acid-activated signaling pathway | 4.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008843: endochitinase activity | 0.00E+00 |
| 2 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 3 | GO:0030755: quercetin 3-O-methyltransferase activity | 0.00E+00 |
| 4 | GO:0030744: luteolin O-methyltransferase activity | 0.00E+00 |
| 5 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 6 | GO:0003855: 3-dehydroquinate dehydratase activity | 0.00E+00 |
| 7 | GO:0035885: exochitinase activity | 0.00E+00 |
| 8 | GO:0033799: myricetin 3'-O-methyltransferase activity | 0.00E+00 |
| 9 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 10 | GO:0003856: 3-dehydroquinate synthase activity | 0.00E+00 |
| 11 | GO:0004764: shikimate 3-dehydrogenase (NADP+) activity | 0.00E+00 |
| 12 | GO:0047763: caffeate O-methyltransferase activity | 0.00E+00 |
| 13 | GO:0003743: translation initiation factor activity | 7.97E-07 |
| 14 | GO:0005524: ATP binding | 9.93E-06 |
| 15 | GO:0030276: clathrin binding | 3.49E-05 |
| 16 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.06E-04 |
| 17 | GO:0017096: acetylserotonin O-methyltransferase activity | 1.06E-04 |
| 18 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 1.06E-04 |
| 19 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 1.06E-04 |
| 20 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.06E-04 |
| 21 | GO:0004824: lysine-tRNA ligase activity | 1.06E-04 |
| 22 | GO:0030371: translation repressor activity | 1.06E-04 |
| 23 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.06E-04 |
| 24 | GO:0042937: tripeptide transporter activity | 2.48E-04 |
| 25 | GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity | 2.48E-04 |
| 26 | GO:0004817: cysteine-tRNA ligase activity | 2.48E-04 |
| 27 | GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 2.48E-04 |
| 28 | GO:0043024: ribosomal small subunit binding | 2.48E-04 |
| 29 | GO:0005198: structural molecule activity | 2.96E-04 |
| 30 | GO:0042409: caffeoyl-CoA O-methyltransferase activity | 4.12E-04 |
| 31 | GO:0008964: phosphoenolpyruvate carboxylase activity | 4.12E-04 |
| 32 | GO:0004816: asparagine-tRNA ligase activity | 4.12E-04 |
| 33 | GO:0004478: methionine adenosyltransferase activity | 4.12E-04 |
| 34 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 4.12E-04 |
| 35 | GO:0019829: cation-transporting ATPase activity | 4.12E-04 |
| 36 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 5.92E-04 |
| 37 | GO:0004792: thiosulfate sulfurtransferase activity | 5.92E-04 |
| 38 | GO:0008026: ATP-dependent helicase activity | 6.34E-04 |
| 39 | GO:0000993: RNA polymerase II core binding | 7.86E-04 |
| 40 | GO:0046527: glucosyltransferase activity | 7.86E-04 |
| 41 | GO:0004930: G-protein coupled receptor activity | 7.86E-04 |
| 42 | GO:0042936: dipeptide transporter activity | 7.86E-04 |
| 43 | GO:0005496: steroid binding | 9.92E-04 |
| 44 | GO:0008641: small protein activating enzyme activity | 9.92E-04 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.06E-03 |
| 46 | GO:0031369: translation initiation factor binding | 1.21E-03 |
| 47 | GO:0036402: proteasome-activating ATPase activity | 1.21E-03 |
| 48 | GO:0016615: malate dehydrogenase activity | 1.21E-03 |
| 49 | GO:0008420: CTD phosphatase activity | 1.21E-03 |
| 50 | GO:0102391: decanoate--CoA ligase activity | 1.45E-03 |
| 51 | GO:0030060: L-malate dehydrogenase activity | 1.45E-03 |
| 52 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.45E-03 |
| 53 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.45E-03 |
| 54 | GO:0016887: ATPase activity | 1.47E-03 |
| 55 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.70E-03 |
| 56 | GO:0000287: magnesium ion binding | 1.96E-03 |
| 57 | GO:0004033: aldo-keto reductase (NADP) activity | 1.97E-03 |
| 58 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.97E-03 |
| 59 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.21E-03 |
| 60 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 2.53E-03 |
| 61 | GO:0030955: potassium ion binding | 2.84E-03 |
| 62 | GO:0004743: pyruvate kinase activity | 2.84E-03 |
| 63 | GO:0008171: O-methyltransferase activity | 3.15E-03 |
| 64 | GO:0015114: phosphate ion transmembrane transporter activity | 4.16E-03 |
| 65 | GO:0005388: calcium-transporting ATPase activity | 4.16E-03 |
| 66 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.34E-03 |
| 67 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.34E-03 |
| 68 | GO:0004175: endopeptidase activity | 4.52E-03 |
| 69 | GO:0017025: TBP-class protein binding | 4.88E-03 |
| 70 | GO:0008061: chitin binding | 4.88E-03 |
| 71 | GO:0051536: iron-sulfur cluster binding | 5.65E-03 |
| 72 | GO:0046872: metal ion binding | 5.75E-03 |
| 73 | GO:0043424: protein histidine kinase binding | 6.05E-03 |
| 74 | GO:0008565: protein transporter activity | 7.10E-03 |
| 75 | GO:0047134: protein-disulfide reductase activity | 8.19E-03 |
| 76 | GO:0005515: protein binding | 8.62E-03 |
| 77 | GO:0004402: histone acetyltransferase activity | 8.64E-03 |
| 78 | GO:0008194: UDP-glycosyltransferase activity | 9.17E-03 |
| 79 | GO:0010181: FMN binding | 9.58E-03 |
| 80 | GO:0004791: thioredoxin-disulfide reductase activity | 9.58E-03 |
| 81 | GO:0003729: mRNA binding | 9.66E-03 |
| 82 | GO:0016413: O-acetyltransferase activity | 1.31E-02 |
| 83 | GO:0008375: acetylglucosaminyltransferase activity | 1.48E-02 |
| 84 | GO:0004004: ATP-dependent RNA helicase activity | 1.54E-02 |
| 85 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.59E-02 |
| 86 | GO:0005096: GTPase activator activity | 1.71E-02 |
| 87 | GO:0004222: metalloendopeptidase activity | 1.77E-02 |
| 88 | GO:0030145: manganese ion binding | 1.83E-02 |
| 89 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.95E-02 |
| 90 | GO:0050661: NADP binding | 2.14E-02 |
| 91 | GO:0005215: transporter activity | 2.47E-02 |
| 92 | GO:0051287: NAD binding | 2.68E-02 |
| 93 | GO:0051082: unfolded protein binding | 3.72E-02 |
| 94 | GO:0016746: transferase activity, transferring acyl groups | 3.80E-02 |
| 95 | GO:0004386: helicase activity | 3.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019822: P4 peroxisome | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0005829: cytosol | 9.89E-16 |
| 4 | GO:0009506: plasmodesma | 5.99E-07 |
| 5 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.07E-06 |
| 6 | GO:0031597: cytosolic proteasome complex | 3.53E-05 |
| 7 | GO:0005774: vacuolar membrane | 5.33E-05 |
| 8 | GO:0045334: clathrin-coated endocytic vesicle | 1.06E-04 |
| 9 | GO:0008023: transcription elongation factor complex | 1.06E-04 |
| 10 | GO:0045252: oxoglutarate dehydrogenase complex | 1.06E-04 |
| 11 | GO:0005737: cytoplasm | 1.59E-04 |
| 12 | GO:0030176: integral component of endoplasmic reticulum membrane | 2.81E-04 |
| 13 | GO:0030132: clathrin coat of coated pit | 4.12E-04 |
| 14 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 4.12E-04 |
| 15 | GO:0070062: extracellular exosome | 5.92E-04 |
| 16 | GO:0033588: Elongator holoenzyme complex | 5.92E-04 |
| 17 | GO:0005886: plasma membrane | 7.37E-04 |
| 18 | GO:0030126: COPI vesicle coat | 9.92E-04 |
| 19 | GO:0030127: COPII vesicle coat | 1.21E-03 |
| 20 | GO:0005618: cell wall | 1.25E-03 |
| 21 | GO:0031595: nuclear proteasome complex | 1.70E-03 |
| 22 | GO:0000123: histone acetyltransferase complex | 1.70E-03 |
| 23 | GO:0031982: vesicle | 1.97E-03 |
| 24 | GO:0008180: COP9 signalosome | 2.53E-03 |
| 25 | GO:0008540: proteasome regulatory particle, base subcomplex | 2.84E-03 |
| 26 | GO:0005740: mitochondrial envelope | 3.15E-03 |
| 27 | GO:0000502: proteasome complex | 3.35E-03 |
| 28 | GO:0016020: membrane | 3.40E-03 |
| 29 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.47E-03 |
| 30 | GO:0005802: trans-Golgi network | 3.71E-03 |
| 31 | GO:0031307: integral component of mitochondrial outer membrane | 3.81E-03 |
| 32 | GO:0005768: endosome | 4.51E-03 |
| 33 | GO:0005794: Golgi apparatus | 5.08E-03 |
| 34 | GO:0009524: phragmoplast | 6.26E-03 |
| 35 | GO:0009532: plastid stroma | 6.46E-03 |
| 36 | GO:0005741: mitochondrial outer membrane | 6.46E-03 |
| 37 | GO:0000775: chromosome, centromeric region | 6.87E-03 |
| 38 | GO:0009536: plastid | 7.21E-03 |
| 39 | GO:0009504: cell plate | 1.01E-02 |
| 40 | GO:0000145: exocyst | 1.11E-02 |
| 41 | GO:0005694: chromosome | 1.11E-02 |
| 42 | GO:0016592: mediator complex | 1.11E-02 |
| 43 | GO:0009570: chloroplast stroma | 1.12E-02 |
| 44 | GO:0010319: stromule | 1.26E-02 |
| 45 | GO:0005783: endoplasmic reticulum | 1.27E-02 |
| 46 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.39E-02 |
| 47 | GO:0005788: endoplasmic reticulum lumen | 1.42E-02 |
| 48 | GO:0005643: nuclear pore | 1.65E-02 |
| 49 | GO:0005856: cytoskeleton | 2.54E-02 |
| 50 | GO:0043231: intracellular membrane-bounded organelle | 2.57E-02 |
| 51 | GO:0016607: nuclear speck | 3.33E-02 |
| 52 | GO:0010008: endosome membrane | 3.33E-02 |
| 53 | GO:0005730: nucleolus | 4.18E-02 |
| 54 | GO:0009543: chloroplast thylakoid lumen | 4.36E-02 |
| 55 | GO:0005777: peroxisome | 4.73E-02 |