co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046085: adenosine metabolic process	0.00E+00
2	GO:0048870: cell motility	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0015822: ornithine transport	0.00E+00
5	GO:0007530: sex determination	0.00E+00
6	GO:0006412: translation	2.83E-08
7	GO:0000398: mRNA splicing, via spliceosome	4.33E-05
8	GO:0000028: ribosomal small subunit assembly	4.65E-05
9	GO:0000066: mitochondrial ornithine transport	8.78E-05
10	GO:0016031: tRNA import into mitochondrion	8.78E-05
11	GO:0000387: spliceosomal snRNP assembly	8.90E-05
12	GO:0042254: ribosome biogenesis	2.04E-04
13	GO:0007163: establishment or maintenance of cell polarity	2.08E-04
14	GO:0006432: phenylalanyl-tRNA aminoacylation	2.08E-04
15	GO:0000027: ribosomal large subunit assembly	2.70E-04
16	GO:0010452: histone H3-K36 methylation	3.48E-04
17	GO:0008333: endosome to lysosome transport	3.48E-04
18	GO:1904278: positive regulation of wax biosynthetic process	3.48E-04
19	GO:1902626: assembly of large subunit precursor of preribosome	3.48E-04
20	GO:0042147: retrograde transport, endosome to Golgi	4.63E-04
21	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.01E-04
22	GO:0009165: nucleotide biosynthetic process	6.66E-04
23	GO:0009755: hormone-mediated signaling pathway	6.66E-04
24	GO:0010090: trichome morphogenesis	7.47E-04
25	GO:0030041: actin filament polymerization	8.44E-04
26	GO:0060776: simple leaf morphogenesis	8.44E-04
27	GO:0033365: protein localization to organelle	1.03E-03
28	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.03E-03
29	GO:0051568: histone H3-K4 methylation	1.03E-03
30	GO:0043248: proteasome assembly	1.03E-03
31	GO:0000054: ribosomal subunit export from nucleus	1.23E-03
32	GO:0045010: actin nucleation	1.66E-03
33	GO:0010928: regulation of auxin mediated signaling pathway	1.66E-03
34	GO:0006457: protein folding	1.81E-03
35	GO:0010204: defense response signaling pathway, resistance gene-independent	1.89E-03
36	GO:0001510: RNA methylation	1.89E-03
37	GO:0048589: developmental growth	2.14E-03
38	GO:0000902: cell morphogenesis	2.14E-03
39	GO:0009965: leaf morphogenesis	2.18E-03
40	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	2.39E-03
41	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.65E-03
42	GO:0016441: posttranscriptional gene silencing	2.65E-03
43	GO:0016925: protein sumoylation	3.21E-03
44	GO:0010628: positive regulation of gene expression	3.50E-03
45	GO:0048467: gynoecium development	3.80E-03
46	GO:0010020: chloroplast fission	3.80E-03
47	GO:0010039: response to iron ion	4.10E-03
48	GO:0034976: response to endoplasmic reticulum stress	4.42E-03
49	GO:0006406: mRNA export from nucleus	4.74E-03
50	GO:0006289: nucleotide-excision repair	4.74E-03
51	GO:0006487: protein N-linked glycosylation	4.74E-03
52	GO:0009116: nucleoside metabolic process	4.74E-03
53	GO:0015031: protein transport	5.15E-03
54	GO:0010431: seed maturation	5.42E-03
55	GO:0007005: mitochondrion organization	5.76E-03
56	GO:0016226: iron-sulfur cluster assembly	5.76E-03
57	GO:0000413: protein peptidyl-prolyl isomerization	7.24E-03
58	GO:0006606: protein import into nucleus	7.24E-03
59	GO:0008380: RNA splicing	7.58E-03
60	GO:0010182: sugar mediated signaling pathway	7.62E-03
61	GO:0010154: fruit development	7.62E-03
62	GO:0010305: leaf vascular tissue pattern formation	7.62E-03
63	GO:0010183: pollen tube guidance	8.42E-03
64	GO:0048825: cotyledon development	8.42E-03
65	GO:0009749: response to glucose	8.42E-03
66	GO:0080156: mitochondrial mRNA modification	8.83E-03
67	GO:0006914: autophagy	1.01E-02
68	GO:0010286: heat acclimation	1.05E-02
69	GO:0006886: intracellular protein transport	1.51E-02
70	GO:0009910: negative regulation of flower development	1.53E-02
71	GO:0000724: double-strand break repair via homologous recombination	1.58E-02
72	GO:0045087: innate immune response	1.63E-02
73	GO:0006839: mitochondrial transport	1.79E-02
74	GO:0006281: DNA repair	1.81E-02
75	GO:0008283: cell proliferation	1.95E-02
76	GO:0000154: rRNA modification	2.12E-02
77	GO:0006486: protein glycosylation	2.41E-02
78	GO:0010224: response to UV-B	2.47E-02
79	GO:0009908: flower development	2.90E-02
80	GO:0016569: covalent chromatin modification	2.97E-02
81	GO:0006396: RNA processing	3.17E-02
82	GO:0009793: embryo development ending in seed dormancy	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	5.56E-12
3	GO:0001055: RNA polymerase II activity	8.90E-05
4	GO:0001054: RNA polymerase I activity	1.25E-04
5	GO:0001056: RNA polymerase III activity	1.46E-04
6	GO:0000064: L-ornithine transmembrane transporter activity	2.08E-04
7	GO:0004826: phenylalanine-tRNA ligase activity	2.08E-04
8	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.08E-04
9	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.08E-04
10	GO:0032403: protein complex binding	3.48E-04
11	GO:0008649: rRNA methyltransferase activity	3.48E-04
12	GO:0008430: selenium binding	3.48E-04
13	GO:0008097: 5S rRNA binding	5.01E-04
14	GO:0004749: ribose phosphate diphosphokinase activity	5.01E-04
15	GO:0004576: oligosaccharyl transferase activity	6.66E-04
16	GO:0005496: steroid binding	8.44E-04
17	GO:0031386: protein tag	8.44E-04
18	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	8.44E-04
19	GO:0008143: poly(A) binding	1.44E-03
20	GO:0042162: telomeric DNA binding	1.44E-03
21	GO:0008173: RNA methyltransferase activity	1.89E-03
22	GO:0043621: protein self-association	2.10E-03
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-03
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.61E-03
25	GO:0003723: RNA binding	3.11E-03
26	GO:0000049: tRNA binding	3.21E-03
27	GO:0005515: protein binding	3.34E-03
28	GO:0015266: protein channel activity	3.50E-03
29	GO:0008565: protein transporter activity	5.51E-03
30	GO:0000166: nucleotide binding	6.44E-03
31	GO:0003756: protein disulfide isomerase activity	6.48E-03
32	GO:0003729: mRNA binding	6.54E-03
33	GO:0008080: N-acetyltransferase activity	7.62E-03
34	GO:0008375: acetylglucosaminyltransferase activity	1.24E-02
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.38E-02
36	GO:0003697: single-stranded DNA binding	1.63E-02
37	GO:0019843: rRNA binding	3.64E-02
38	GO:0008017: microtubule binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0097361: CIA complex	0.00E+00
4	GO:0005840: ribosome	3.65E-11
5	GO:0005732: small nucleolar ribonucleoprotein complex	5.19E-08
6	GO:0022625: cytosolic large ribosomal subunit	8.74E-08
7	GO:0071011: precatalytic spliceosome	1.11E-06
8	GO:0005730: nucleolus	1.30E-06
9	GO:0071013: catalytic step 2 spliceosome	1.96E-06
10	GO:0022627: cytosolic small ribosomal subunit	1.13E-05
11	GO:0030904: retromer complex	1.83E-05
12	GO:0022626: cytosolic ribosome	2.30E-05
13	GO:0005829: cytosol	3.41E-05
14	GO:0005736: DNA-directed RNA polymerase I complex	7.31E-05
15	GO:0005662: DNA replication factor A complex	8.78E-05
16	GO:0005666: DNA-directed RNA polymerase III complex	8.90E-05
17	GO:0005665: DNA-directed RNA polymerase II, core complex	1.46E-04
18	GO:0019013: viral nucleocapsid	1.68E-04
19	GO:0035145: exon-exon junction complex	2.08E-04
20	GO:0005697: telomerase holoenzyme complex	2.08E-04
21	GO:0000419: DNA-directed RNA polymerase V complex	2.42E-04
22	GO:0034719: SMN-Sm protein complex	3.48E-04
23	GO:0005838: proteasome regulatory particle	3.48E-04
24	GO:0000439: core TFIIH complex	3.48E-04
25	GO:1990726: Lsm1-7-Pat1 complex	5.01E-04
26	GO:0016593: Cdc73/Paf1 complex	6.66E-04
27	GO:0005682: U5 snRNP	6.66E-04
28	GO:0005687: U4 snRNP	8.44E-04
29	GO:0097526: spliceosomal tri-snRNP complex	8.44E-04
30	GO:0008250: oligosaccharyltransferase complex	8.44E-04
31	GO:0000974: Prp19 complex	1.03E-03
32	GO:0005771: multivesicular body	1.03E-03
33	GO:0031209: SCAR complex	1.03E-03
34	GO:0005689: U12-type spliceosomal complex	1.23E-03
35	GO:0005801: cis-Golgi network	1.23E-03
36	GO:0005737: cytoplasm	1.27E-03
37	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.63E-03
38	GO:0071004: U2-type prespliceosome	1.66E-03
39	GO:0005688: U6 snRNP	1.66E-03
40	GO:0000421: autophagosome membrane	1.66E-03
41	GO:0031902: late endosome membrane	1.79E-03
42	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.89E-03
43	GO:0005763: mitochondrial small ribosomal subunit	2.14E-03
44	GO:0005685: U1 snRNP	2.14E-03
45	GO:0000502: proteasome complex	2.61E-03
46	GO:0005686: U2 snRNP	2.65E-03
47	GO:0000418: DNA-directed RNA polymerase IV complex	2.65E-03
48	GO:0008541: proteasome regulatory particle, lid subcomplex	2.93E-03
49	GO:0005681: spliceosomal complex	3.07E-03
50	GO:0016607: nuclear speck	3.17E-03
51	GO:0005834: heterotrimeric G-protein complex	3.27E-03
52	GO:0009508: plastid chromosome	3.50E-03
53	GO:0005623: cell	4.73E-03
54	GO:0015935: small ribosomal subunit	5.42E-03
55	GO:0031410: cytoplasmic vesicle	5.76E-03
56	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.48E-03
57	GO:0071944: cell periphery	9.67E-03
58	GO:0009506: plasmodesma	9.68E-03
59	GO:0009295: nucleoid	1.05E-02
60	GO:0000932: P-body	1.14E-02
61	GO:0005874: microtubule	1.18E-02
62	GO:0005622: intracellular	1.34E-02
63	GO:0005856: cytoskeleton	2.12E-02
64	GO:0005774: vacuolar membrane	2.33E-02
65	GO:0012505: endomembrane system	3.04E-02
66	GO:0009706: chloroplast inner membrane	3.10E-02
67	GO:0005654: nucleoplasm	3.57E-02
68	GO:0005759: mitochondrial matrix	4.28E-02
69	GO:0005794: Golgi apparatus	4.52E-02