Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G56110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2001142: nicotinate transport0.00E+00
2GO:0019481: L-alanine catabolic process, by transamination0.00E+00
3GO:0032497: detection of lipopolysaccharide0.00E+00
4GO:0032499: detection of peptidoglycan0.00E+00
5GO:2001143: N-methylnicotinate transport0.00E+00
6GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
7GO:1903086: negative regulation of sinapate ester biosynthetic process0.00E+00
8GO:0002679: respiratory burst involved in defense response7.85E-06
9GO:0051131: chaperone-mediated protein complex assembly7.85E-06
10GO:0046686: response to cadmium ion6.38E-05
11GO:0010200: response to chitin1.05E-04
12GO:0071277: cellular response to calcium ion1.33E-04
13GO:0018920: glyphosate metabolic process1.33E-04
14GO:0032491: detection of molecule of fungal origin1.33E-04
15GO:0034628: 'de novo' NAD biosynthetic process from aspartate1.33E-04
16GO:0009966: regulation of signal transduction1.33E-04
17GO:0051865: protein autoubiquitination1.37E-04
18GO:0009408: response to heat2.16E-04
19GO:0045087: innate immune response2.73E-04
20GO:0010372: positive regulation of gibberellin biosynthetic process3.07E-04
21GO:0046939: nucleotide phosphorylation3.07E-04
22GO:0010155: regulation of proton transport3.07E-04
23GO:0019521: D-gluconate metabolic process3.07E-04
24GO:0070475: rRNA base methylation5.06E-04
25GO:0051176: positive regulation of sulfur metabolic process5.06E-04
26GO:0061077: chaperone-mediated protein folding5.72E-04
27GO:0030100: regulation of endocytosis7.24E-04
28GO:0009399: nitrogen fixation7.24E-04
29GO:0015696: ammonium transport7.24E-04
30GO:0071323: cellular response to chitin7.24E-04
31GO:0009306: protein secretion7.38E-04
32GO:0071219: cellular response to molecule of bacterial origin9.59E-04
33GO:1902347: response to strigolactone9.59E-04
34GO:0033320: UDP-D-xylose biosynthetic process9.59E-04
35GO:0072488: ammonium transmembrane transport9.59E-04
36GO:0006457: protein folding9.79E-04
37GO:0048544: recognition of pollen9.89E-04
38GO:0009164: nucleoside catabolic process1.21E-03
39GO:2000762: regulation of phenylpropanoid metabolic process1.21E-03
40GO:0009435: NAD biosynthetic process1.21E-03
41GO:0009845: seed germination1.26E-03
42GO:1901657: glycosyl compound metabolic process1.28E-03
43GO:0006468: protein phosphorylation1.35E-03
44GO:0006796: phosphate-containing compound metabolic process1.49E-03
45GO:0010337: regulation of salicylic acid metabolic process1.49E-03
46GO:0006014: D-ribose metabolic process1.49E-03
47GO:0000470: maturation of LSU-rRNA1.49E-03
48GO:0042732: D-xylose metabolic process1.49E-03
49GO:0009816: defense response to bacterium, incompatible interaction1.70E-03
50GO:0009423: chorismate biosynthetic process1.78E-03
51GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.78E-03
52GO:0007166: cell surface receptor signaling pathway2.03E-03
53GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway2.09E-03
54GO:0008219: cell death2.09E-03
55GO:0006955: immune response2.09E-03
56GO:0006491: N-glycan processing2.42E-03
57GO:1900150: regulation of defense response to fungus2.42E-03
58GO:0006402: mRNA catabolic process2.42E-03
59GO:0050821: protein stabilization2.42E-03
60GO:0045010: actin nucleation2.42E-03
61GO:0016051: carbohydrate biosynthetic process2.64E-03
62GO:0009932: cell tip growth2.77E-03
63GO:0009060: aerobic respiration3.13E-03
64GO:0098656: anion transmembrane transport3.13E-03
65GO:0046685: response to arsenic-containing substance3.13E-03
66GO:0009051: pentose-phosphate shunt, oxidative branch3.13E-03
67GO:0008202: steroid metabolic process3.50E-03
68GO:0090332: stomatal closure3.50E-03
69GO:0019538: protein metabolic process3.89E-03
70GO:0048829: root cap development3.89E-03
71GO:0046777: protein autophosphorylation4.26E-03
72GO:0009073: aromatic amino acid family biosynthetic process4.30E-03
73GO:0009750: response to fructose4.30E-03
74GO:0010015: root morphogenesis4.30E-03
75GO:0034605: cellular response to heat5.60E-03
76GO:0071732: cellular response to nitric oxide6.06E-03
77GO:0090351: seedling development6.06E-03
78GO:0070588: calcium ion transmembrane transport6.06E-03
79GO:0009225: nucleotide-sugar metabolic process6.06E-03
80GO:0009624: response to nematode6.48E-03
81GO:0009742: brassinosteroid mediated signaling pathway6.87E-03
82GO:0009863: salicylic acid mediated signaling pathway7.01E-03
83GO:0010187: negative regulation of seed germination7.01E-03
84GO:0006487: protein N-linked glycosylation7.01E-03
85GO:0042742: defense response to bacterium8.53E-03
86GO:0016226: iron-sulfur cluster assembly8.55E-03
87GO:0030433: ubiquitin-dependent ERAD pathway8.55E-03
88GO:0030245: cellulose catabolic process8.55E-03
89GO:0071215: cellular response to abscisic acid stimulus9.08E-03
90GO:0009686: gibberellin biosynthetic process9.08E-03
91GO:0071369: cellular response to ethylene stimulus9.08E-03
92GO:0045492: xylan biosynthetic process9.63E-03
93GO:0006817: phosphate ion transport9.63E-03
94GO:0016310: phosphorylation1.02E-02
95GO:0042631: cellular response to water deprivation1.08E-02
96GO:0006885: regulation of pH1.13E-02
97GO:0009749: response to glucose1.25E-02
98GO:0019252: starch biosynthetic process1.25E-02
99GO:0002229: defense response to oomycetes1.32E-02
100GO:0031047: gene silencing by RNA1.38E-02
101GO:0035556: intracellular signal transduction1.42E-02
102GO:0071281: cellular response to iron ion1.44E-02
103GO:0006952: defense response1.50E-02
104GO:0006904: vesicle docking involved in exocytosis1.57E-02
105GO:0010286: heat acclimation1.57E-02
106GO:0001666: response to hypoxia1.71E-02
107GO:0009615: response to virus1.71E-02
108GO:0048573: photoperiodism, flowering1.92E-02
109GO:0016049: cell growth1.99E-02
110GO:0048366: leaf development2.05E-02
111GO:0009817: defense response to fungus, incompatible interaction2.06E-02
112GO:0010311: lateral root formation2.14E-02
113GO:0080167: response to karrikin2.16E-02
114GO:0009637: response to blue light2.44E-02
115GO:0009737: response to abscisic acid2.65E-02
116GO:0006887: exocytosis2.76E-02
117GO:0006897: endocytosis2.76E-02
118GO:0008283: cell proliferation2.92E-02
119GO:0009744: response to sucrose2.92E-02
120GO:0032259: methylation3.06E-02
121GO:0009414: response to water deprivation3.13E-02
122GO:0009965: leaf morphogenesis3.18E-02
123GO:0048364: root development3.33E-02
124GO:0006397: mRNA processing3.33E-02
125GO:0009753: response to jasmonic acid3.42E-02
126GO:0006812: cation transport3.44E-02
127GO:0006364: rRNA processing3.62E-02
128GO:0006486: protein glycosylation3.62E-02
129GO:0006813: potassium ion transport3.62E-02
130GO:0010224: response to UV-B3.71E-02
131GO:0006857: oligopeptide transport3.80E-02
132GO:0043086: negative regulation of catalytic activity4.07E-02
133GO:0006357: regulation of transcription from RNA polymerase II promoter4.21E-02
134GO:0009626: plant-type hypersensitive response4.26E-02
135GO:0009620: response to fungus4.36E-02
136GO:0018105: peptidyl-serine phosphorylation4.74E-02
137GO:0006396: RNA processing4.74E-02
RankGO TermAdjusted P value
1GO:0008987: quinolinate synthetase A activity0.00E+00
2GO:0005522: profilin binding0.00E+00
3GO:0047734: CDP-glycerol diphosphatase activity0.00E+00
4GO:2001080: chitosan binding0.00E+00
5GO:0090417: N-methylnicotinate transporter activity0.00E+00
6GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
7GO:0090416: nicotinate transporter activity0.00E+00
8GO:0010857: calcium-dependent protein kinase activity0.00E+00
9GO:0102118: gibberellin A4 carboxyl methyltransferase activity0.00E+00
10GO:0005524: ATP binding2.67E-06
11GO:0016301: kinase activity1.61E-05
12GO:0047631: ADP-ribose diphosphatase activity2.41E-05
13GO:0051082: unfolded protein binding9.53E-05
14GO:0030544: Hsp70 protein binding1.33E-04
15GO:0010341: gibberellin carboxyl-O-methyltransferase activity1.33E-04
16GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity1.33E-04
17GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity1.33E-04
18GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity1.33E-04
19GO:0008114: phosphogluconate 2-dehydrogenase activity1.33E-04
20GO:0015085: calcium ion transmembrane transporter activity1.33E-04
21GO:0003729: mRNA binding2.85E-04
22GO:0043141: ATP-dependent 5'-3' DNA helicase activity3.07E-04
23GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity7.24E-04
24GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity7.24E-04
25GO:0019201: nucleotide kinase activity7.24E-04
26GO:0019199: transmembrane receptor protein kinase activity9.59E-04
27GO:0043015: gamma-tubulin binding9.59E-04
28GO:0018685: alkane 1-monooxygenase activity1.21E-03
29GO:0002020: protease binding1.21E-03
30GO:0004356: glutamate-ammonia ligase activity1.21E-03
31GO:0004674: protein serine/threonine kinase activity1.32E-03
32GO:0035673: oligopeptide transmembrane transporter activity1.49E-03
33GO:0000210: NAD+ diphosphatase activity1.49E-03
34GO:0016462: pyrophosphatase activity1.49E-03
35GO:0008519: ammonium transmembrane transporter activity1.49E-03
36GO:0048040: UDP-glucuronate decarboxylase activity1.49E-03
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.57E-03
38GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1.78E-03
39GO:0004747: ribokinase activity1.78E-03
40GO:0004017: adenylate kinase activity1.78E-03
41GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.78E-03
42GO:0004559: alpha-mannosidase activity1.78E-03
43GO:0070403: NAD+ binding1.78E-03
44GO:0102483: scopolin beta-glucosidase activity1.89E-03
45GO:0008143: poly(A) binding2.09E-03
46GO:0004143: diacylglycerol kinase activity2.09E-03
47GO:0004427: inorganic diphosphatase activity2.09E-03
48GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.41E-03
49GO:0008865: fructokinase activity2.42E-03
50GO:0004714: transmembrane receptor protein tyrosine kinase activity2.42E-03
51GO:0003951: NAD+ kinase activity2.77E-03
52GO:0008142: oxysterol binding2.77E-03
53GO:0008422: beta-glucosidase activity2.88E-03
54GO:0003678: DNA helicase activity3.13E-03
55GO:0008047: enzyme activator activity3.89E-03
56GO:0004672: protein kinase activity4.19E-03
57GO:0015198: oligopeptide transporter activity4.72E-03
58GO:0031625: ubiquitin protein ligase binding5.05E-03
59GO:0005315: inorganic phosphate transmembrane transporter activity5.15E-03
60GO:0019888: protein phosphatase regulator activity5.15E-03
61GO:0005388: calcium-transporting ATPase activity5.15E-03
62GO:0008061: chitin binding6.06E-03
63GO:0005509: calcium ion binding7.55E-03
64GO:0033612: receptor serine/threonine kinase binding8.02E-03
65GO:0019706: protein-cysteine S-palmitoyltransferase activity8.02E-03
66GO:0022891: substrate-specific transmembrane transporter activity9.08E-03
67GO:0008514: organic anion transmembrane transporter activity9.63E-03
68GO:0015144: carbohydrate transmembrane transporter activity9.72E-03
69GO:0005451: monovalent cation:proton antiporter activity1.08E-02
70GO:0005351: sugar:proton symporter activity1.10E-02
71GO:0015299: solute:proton antiporter activity1.19E-02
72GO:0004518: nuclease activity1.38E-02
73GO:0015385: sodium:proton antiporter activity1.44E-02
74GO:0051015: actin filament binding1.44E-02
75GO:0008375: acetylglucosaminyltransferase activity1.85E-02
76GO:0009931: calcium-dependent protein serine/threonine kinase activity1.85E-02
77GO:0030247: polysaccharide binding1.92E-02
78GO:0004683: calmodulin-dependent protein kinase activity1.92E-02
79GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.99E-02
80GO:0050660: flavin adenine dinucleotide binding2.02E-02
81GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.06E-02
82GO:0005516: calmodulin binding2.23E-02
83GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.59E-02
84GO:0051539: 4 iron, 4 sulfur cluster binding2.68E-02
85GO:0042803: protein homodimerization activity2.71E-02
86GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.88E-02
87GO:0035091: phosphatidylinositol binding3.09E-02
88GO:0043621: protein self-association3.09E-02
89GO:0009055: electron carrier activity3.42E-02
90GO:0022857: transmembrane transporter activity4.45E-02
91GO:0003779: actin binding4.55E-02
92GO:0004842: ubiquitin-protein transferase activity4.79E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane7.93E-07
2GO:0016021: integral component of membrane6.35E-05
3GO:0009506: plasmodesma8.10E-05
4GO:0005911: cell-cell junction1.33E-04
5GO:0016442: RISC complex1.33E-04
6GO:0010494: cytoplasmic stress granule1.37E-04
7GO:0005768: endosome4.18E-04
8GO:0016020: membrane9.38E-04
9GO:0005829: cytosol1.35E-03
10GO:0016363: nuclear matrix1.78E-03
11GO:0005794: Golgi apparatus1.87E-03
12GO:0005783: endoplasmic reticulum3.03E-03
13GO:0048471: perinuclear region of cytoplasm4.30E-03
14GO:0010008: endosome membrane5.56E-03
15GO:0005802: trans-Golgi network5.98E-03
16GO:0043234: protein complex6.53E-03
17GO:0000139: Golgi membrane1.35E-02
18GO:0000145: exocyst1.38E-02
19GO:0032580: Golgi cisterna membrane1.51E-02
20GO:0005778: peroxisomal membrane1.57E-02
21GO:0000932: P-body1.71E-02
22GO:0005788: endoplasmic reticulum lumen1.78E-02
23GO:0005730: nucleolus1.88E-02
24GO:0005737: cytoplasm2.20E-02
25GO:0005635: nuclear envelope3.80E-02
26GO:0005887: integral component of plasma membrane4.32E-02
<
Gene type



Gene DE type