Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
2GO:0071289: cellular response to nickel ion0.00E+00
3GO:0070328: triglyceride homeostasis0.00E+00
4GO:0006862: nucleotide transport0.00E+00
5GO:0055091: phospholipid homeostasis0.00E+00
6GO:0032497: detection of lipopolysaccharide0.00E+00
7GO:0034775: glutathione transmembrane transport0.00E+00
8GO:0050708: regulation of protein secretion0.00E+00
9GO:0071475: cellular hyperosmotic salinity response0.00E+00
10GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
11GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
12GO:0010200: response to chitin2.44E-14
13GO:0009873: ethylene-activated signaling pathway4.35E-06
14GO:0006751: glutathione catabolic process5.31E-06
15GO:0042344: indole glucosinolate catabolic process3.05E-05
16GO:0006355: regulation of transcription, DNA-templated3.08E-05
17GO:0006468: protein phosphorylation3.40E-05
18GO:0006351: transcription, DNA-templated4.98E-05
19GO:2000280: regulation of root development5.46E-05
20GO:0052544: defense response by callose deposition in cell wall8.84E-05
21GO:0006952: defense response1.59E-04
22GO:0009695: jasmonic acid biosynthetic process2.91E-04
23GO:0031408: oxylipin biosynthetic process3.31E-04
24GO:0009611: response to wounding3.91E-04
25GO:0006955: immune response4.37E-04
26GO:0090421: embryonic meristem initiation4.48E-04
27GO:0046208: spermine catabolic process4.48E-04
28GO:0051180: vitamin transport4.48E-04
29GO:0046938: phytochelatin biosynthetic process4.48E-04
30GO:0030974: thiamine pyrophosphate transport4.48E-04
31GO:0009865: pollen tube adhesion4.48E-04
32GO:0050691: regulation of defense response to virus by host4.48E-04
33GO:0006680: glucosylceramide catabolic process4.48E-04
34GO:2000070: regulation of response to water deprivation5.46E-04
35GO:0031407: oxylipin metabolic process9.67E-04
36GO:0042754: negative regulation of circadian rhythm9.67E-04
37GO:0010289: homogalacturonan biosynthetic process9.67E-04
38GO:0055088: lipid homeostasis9.67E-04
39GO:0006741: NADP biosynthetic process9.67E-04
40GO:0015786: UDP-glucose transport9.67E-04
41GO:0006898: receptor-mediated endocytosis9.67E-04
42GO:0015893: drug transport9.67E-04
43GO:0052542: defense response by callose deposition9.67E-04
44GO:0010507: negative regulation of autophagy9.67E-04
45GO:0009751: response to salicylic acid1.32E-03
46GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.57E-03
47GO:0015783: GDP-fucose transport1.57E-03
48GO:0019674: NAD metabolic process1.57E-03
49GO:0080168: abscisic acid transport1.57E-03
50GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.57E-03
51GO:0006598: polyamine catabolic process1.57E-03
52GO:0016045: detection of bacterium1.57E-03
53GO:0046786: viral replication complex formation and maintenance1.57E-03
54GO:0010359: regulation of anion channel activity1.57E-03
55GO:0010288: response to lead ion1.57E-03
56GO:0090630: activation of GTPase activity1.57E-03
57GO:0009737: response to abscisic acid1.86E-03
58GO:0055089: fatty acid homeostasis2.28E-03
59GO:0019363: pyridine nucleotide biosynthetic process2.28E-03
60GO:0010371: regulation of gibberellin biosynthetic process2.28E-03
61GO:0070301: cellular response to hydrogen peroxide2.28E-03
62GO:0072334: UDP-galactose transmembrane transport2.28E-03
63GO:0030100: regulation of endocytosis2.28E-03
64GO:0033014: tetrapyrrole biosynthetic process2.28E-03
65GO:0015700: arsenite transport2.28E-03
66GO:0080024: indolebutyric acid metabolic process2.28E-03
67GO:0009863: salicylic acid mediated signaling pathway2.56E-03
68GO:0046345: abscisic acid catabolic process3.06E-03
69GO:0009652: thigmotropism3.06E-03
70GO:0045088: regulation of innate immune response3.06E-03
71GO:0045727: positive regulation of translation3.06E-03
72GO:0034440: lipid oxidation3.06E-03
73GO:1902347: response to strigolactone3.06E-03
74GO:0006665: sphingolipid metabolic process3.93E-03
75GO:0032957: inositol trisphosphate metabolic process3.93E-03
76GO:0070897: DNA-templated transcriptional preinitiation complex assembly3.93E-03
77GO:0006873: cellular ion homeostasis3.93E-03
78GO:0045487: gibberellin catabolic process3.93E-03
79GO:0048497: maintenance of floral organ identity3.93E-03
80GO:0042147: retrograde transport, endosome to Golgi4.38E-03
81GO:0007166: cell surface receptor signaling pathway4.46E-03
82GO:0042631: cellular response to water deprivation4.73E-03
83GO:0009617: response to bacterium4.76E-03
84GO:0047484: regulation of response to osmotic stress4.86E-03
85GO:0010337: regulation of salicylic acid metabolic process4.86E-03
86GO:0048544: recognition of pollen5.49E-03
87GO:0010555: response to mannitol5.87E-03
88GO:0080086: stamen filament development5.87E-03
89GO:2000067: regulation of root morphogenesis5.87E-03
90GO:1901001: negative regulation of response to salt stress5.87E-03
91GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.87E-03
92GO:2000033: regulation of seed dormancy process5.87E-03
93GO:0010016: shoot system morphogenesis5.87E-03
94GO:0048280: vesicle fusion with Golgi apparatus5.87E-03
95GO:0009749: response to glucose5.89E-03
96GO:0010193: response to ozone6.31E-03
97GO:0006891: intra-Golgi vesicle-mediated transport6.31E-03
98GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.93E-03
99GO:0010161: red light signaling pathway6.93E-03
100GO:1900057: positive regulation of leaf senescence6.93E-03
101GO:0009620: response to fungus7.06E-03
102GO:0019760: glucosinolate metabolic process7.66E-03
103GO:0006970: response to osmotic stress7.91E-03
104GO:0009624: response to nematode7.93E-03
105GO:0007155: cell adhesion8.07E-03
106GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.07E-03
107GO:1900150: regulation of defense response to fungus8.07E-03
108GO:0045010: actin nucleation8.07E-03
109GO:0009699: phenylpropanoid biosynthetic process9.27E-03
110GO:0009932: cell tip growth9.27E-03
111GO:0009880: embryonic pattern specification9.27E-03
112GO:0007186: G-protein coupled receptor signaling pathway9.27E-03
113GO:0048193: Golgi vesicle transport9.27E-03
114GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.03E-02
115GO:0001708: cell fate specification1.05E-02
116GO:0098656: anion transmembrane transport1.05E-02
117GO:0046685: response to arsenic-containing substance1.05E-02
118GO:0006783: heme biosynthetic process1.05E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
120GO:0048268: clathrin coat assembly1.18E-02
121GO:0007346: regulation of mitotic cell cycle1.18E-02
122GO:0010629: negative regulation of gene expression1.32E-02
123GO:0006896: Golgi to vacuole transport1.32E-02
124GO:0055062: phosphate ion homeostasis1.32E-02
125GO:0006782: protoporphyrinogen IX biosynthetic process1.32E-02
126GO:0019538: protein metabolic process1.32E-02
127GO:0006811: ion transport1.32E-02
128GO:0010015: root morphogenesis1.46E-02
129GO:0009698: phenylpropanoid metabolic process1.46E-02
130GO:0009682: induced systemic resistance1.46E-02
131GO:0009750: response to fructose1.46E-02
132GO:0009651: response to salt stress1.50E-02
133GO:0045087: innate immune response1.52E-02
134GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.61E-02
135GO:0000266: mitochondrial fission1.61E-02
136GO:0010105: negative regulation of ethylene-activated signaling pathway1.61E-02
137GO:0042742: defense response to bacterium1.67E-02
138GO:0016310: phosphorylation1.68E-02
139GO:0006979: response to oxidative stress1.70E-02
140GO:0006839: mitochondrial transport1.74E-02
141GO:0050826: response to freezing1.77E-02
142GO:0018107: peptidyl-threonine phosphorylation1.77E-02
143GO:0055046: microgametogenesis1.77E-02
144GO:0030048: actin filament-based movement1.77E-02
145GO:0006897: endocytosis1.81E-02
146GO:0006470: protein dephosphorylation1.89E-02
147GO:0048467: gynoecium development1.92E-02
148GO:0002237: response to molecule of bacterial origin1.92E-02
149GO:0051707: response to other organism1.97E-02
150GO:0010468: regulation of gene expression1.99E-02
151GO:0009901: anther dehiscence2.09E-02
152GO:0071732: cellular response to nitric oxide2.09E-02
153GO:0070588: calcium ion transmembrane transport2.09E-02
154GO:0009833: plant-type primary cell wall biogenesis2.26E-02
155GO:0006855: drug transmembrane transport2.30E-02
156GO:0010187: negative regulation of seed germination2.43E-02
157GO:2000377: regulation of reactive oxygen species metabolic process2.43E-02
158GO:0042538: hyperosmotic salinity response2.47E-02
159GO:0009809: lignin biosynthetic process2.65E-02
160GO:0051321: meiotic cell cycle2.79E-02
161GO:0007165: signal transduction2.80E-02
162GO:0080092: regulation of pollen tube growth2.97E-02
163GO:0030245: cellulose catabolic process2.97E-02
164GO:0030433: ubiquitin-dependent ERAD pathway2.97E-02
165GO:0071215: cellular response to abscisic acid stimulus3.16E-02
166GO:0009686: gibberellin biosynthetic process3.16E-02
167GO:0071369: cellular response to ethylene stimulus3.16E-02
168GO:0040007: growth3.16E-02
169GO:0001944: vasculature development3.16E-02
170GO:0009723: response to ethylene3.31E-02
171GO:0010089: xylem development3.36E-02
172GO:0010584: pollen exine formation3.36E-02
173GO:0048443: stamen development3.36E-02
174GO:0010091: trichome branching3.36E-02
175GO:0019722: calcium-mediated signaling3.36E-02
176GO:0080167: response to karrikin3.61E-02
177GO:0048653: anther development3.76E-02
178GO:0000271: polysaccharide biosynthetic process3.76E-02
179GO:0018105: peptidyl-serine phosphorylation3.89E-02
180GO:0046777: protein autophosphorylation3.92E-02
181GO:0048868: pollen tube development3.96E-02
182GO:0009960: endosperm development3.96E-02
183GO:0045489: pectin biosynthetic process3.96E-02
184GO:0000398: mRNA splicing, via spliceosome4.35E-02
185GO:0006623: protein targeting to vacuole4.38E-02
186GO:0010183: pollen tube guidance4.38E-02
187GO:0008654: phospholipid biosynthetic process4.38E-02
188GO:0035556: intracellular signal transduction4.44E-02
189GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.60E-02
190GO:0009630: gravitropism4.82E-02
RankGO TermAdjusted P value
1GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
2GO:0015215: nucleotide transmembrane transporter activity0.00E+00
3GO:0052903: N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity0.00E+00
4GO:0004698: calcium-dependent protein kinase C activity0.00E+00
5GO:0017048: Rho GTPase binding0.00E+00
6GO:0005522: profilin binding0.00E+00
7GO:0008419: RNA lariat debranching enzyme activity0.00E+00
8GO:0052904: N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity0.00E+00
9GO:0052902: spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity0.00E+00
10GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
11GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity4.33E-07
12GO:0016629: 12-oxophytodienoate reductase activity8.88E-06
13GO:0003700: transcription factor activity, sequence-specific DNA binding1.67E-05
14GO:0003840: gamma-glutamyltransferase activity3.05E-05
15GO:0036374: glutathione hydrolase activity3.05E-05
16GO:0043565: sequence-specific DNA binding3.44E-05
17GO:0016301: kinase activity1.48E-04
18GO:0044212: transcription regulatory region DNA binding2.11E-04
19GO:0016621: cinnamoyl-CoA reductase activity4.37E-04
20GO:0090422: thiamine pyrophosphate transporter activity4.48E-04
21GO:0046870: cadmium ion binding4.48E-04
22GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.48E-04
23GO:0015446: ATPase-coupled arsenite transmembrane transporter activity4.48E-04
24GO:0004348: glucosylceramidase activity4.48E-04
25GO:0071992: phytochelatin transmembrane transporter activity4.48E-04
26GO:0090440: abscisic acid transporter activity4.48E-04
27GO:0042736: NADH kinase activity4.48E-04
28GO:0004674: protein serine/threonine kinase activity6.53E-04
29GO:0010181: FMN binding6.94E-04
30GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.07E-04
31GO:0017040: ceramidase activity9.67E-04
32GO:0003839: gamma-glutamylcyclotransferase activity9.67E-04
33GO:0003958: NADPH-hemoprotein reductase activity9.67E-04
34GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity9.67E-04
35GO:0017022: myosin binding9.67E-04
36GO:0004103: choline kinase activity9.67E-04
37GO:0008883: glutamyl-tRNA reductase activity9.67E-04
38GO:0001047: core promoter binding9.67E-04
39GO:0005457: GDP-fucose transmembrane transporter activity1.57E-03
40GO:0047325: inositol tetrakisphosphate 1-kinase activity1.57E-03
41GO:0001664: G-protein coupled receptor binding1.57E-03
42GO:0046592: polyamine oxidase activity1.57E-03
43GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.57E-03
44GO:0031683: G-protein beta/gamma-subunit complex binding1.57E-03
45GO:0046423: allene-oxide cyclase activity1.57E-03
46GO:0004383: guanylate cyclase activity1.57E-03
47GO:0016165: linoleate 13S-lipoxygenase activity1.57E-03
48GO:0019888: protein phosphatase regulator activity1.64E-03
49GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity2.28E-03
50GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.28E-03
51GO:0001653: peptide receptor activity2.28E-03
52GO:0003883: CTP synthase activity2.28E-03
53GO:0005460: UDP-glucose transmembrane transporter activity2.28E-03
54GO:0003677: DNA binding2.77E-03
55GO:0004659: prenyltransferase activity3.06E-03
56GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.06E-03
57GO:0015297: antiporter activity3.38E-03
58GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.93E-03
59GO:0010294: abscisic acid glucosyltransferase activity3.93E-03
60GO:0005459: UDP-galactose transmembrane transporter activity3.93E-03
61GO:0004623: phospholipase A2 activity3.93E-03
62GO:0019137: thioglucosidase activity4.86E-03
63GO:0004672: protein kinase activity5.11E-03
64GO:0051020: GTPase binding5.87E-03
65GO:0005524: ATP binding6.57E-03
66GO:0008143: poly(A) binding6.93E-03
67GO:0080043: quercetin 3-O-glucosyltransferase activity7.06E-03
68GO:0080044: quercetin 7-O-glucosyltransferase activity7.06E-03
69GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity8.15E-03
70GO:0008308: voltage-gated anion channel activity9.27E-03
71GO:0003951: NAD+ kinase activity9.27E-03
72GO:0000989: transcription factor activity, transcription factor binding1.05E-02
73GO:0102483: scopolin beta-glucosidase activity1.08E-02
74GO:0015238: drug transmembrane transporter activity1.26E-02
75GO:0005096: GTPase activator activity1.26E-02
76GO:0005545: 1-phosphatidylinositol binding1.32E-02
77GO:0004864: protein phosphatase inhibitor activity1.32E-02
78GO:0004713: protein tyrosine kinase activity1.32E-02
79GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.39E-02
80GO:0004722: protein serine/threonine phosphatase activity1.48E-02
81GO:0008422: beta-glucosidase activity1.66E-02
82GO:0005262: calcium channel activity1.77E-02
83GO:0005315: inorganic phosphate transmembrane transporter activity1.77E-02
84GO:0003774: motor activity1.92E-02
85GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.92E-02
86GO:0005215: transporter activity2.03E-02
87GO:0017025: TBP-class protein binding2.09E-02
88GO:0030246: carbohydrate binding2.26E-02
89GO:0051087: chaperone binding2.61E-02
90GO:0005516: calmodulin binding2.72E-02
91GO:0016298: lipase activity2.75E-02
92GO:0035251: UDP-glucosyltransferase activity2.79E-02
93GO:0004707: MAP kinase activity2.79E-02
94GO:0031625: ubiquitin protein ligase binding2.94E-02
95GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.97E-02
96GO:0008514: organic anion transmembrane transporter activity3.36E-02
97GO:0003779: actin binding3.66E-02
98GO:0030276: clathrin binding3.96E-02
99GO:0050662: coenzyme binding4.17E-02
100GO:0016758: transferase activity, transferring hexosyl groups4.59E-02
RankGO TermAdjusted P value
1GO:0005911: cell-cell junction4.48E-04
2GO:0070382: exocytic vesicle4.48E-04
3GO:0030133: transport vesicle9.67E-04
4GO:0000159: protein phosphatase type 2A complex1.26E-03
5GO:0070062: extracellular exosome2.28E-03
6GO:0045177: apical part of cell2.28E-03
7GO:0031902: late endosome membrane3.11E-03
8GO:0005886: plasma membrane3.50E-03
9GO:0005634: nucleus3.59E-03
10GO:0030136: clathrin-coated vesicle4.38E-03
11GO:0000793: condensed chromosome4.86E-03
12GO:0031463: Cul3-RING ubiquitin ligase complex4.86E-03
13GO:0005801: cis-Golgi network5.87E-03
14GO:0000794: condensed nuclear chromosome6.93E-03
15GO:0012507: ER to Golgi transport vesicle membrane8.07E-03
16GO:0010494: cytoplasmic stress granule1.05E-02
17GO:0016604: nuclear body1.18E-02
18GO:0005938: cell cortex1.77E-02
19GO:0046658: anchored component of plasma membrane2.27E-02
20GO:0005905: clathrin-coated pit2.79E-02
21GO:0000139: Golgi membrane2.96E-02
22GO:0010008: endosome membrane3.24E-02
23GO:0005768: endosome3.74E-02
24GO:0005770: late endosome3.96E-02
25GO:0000145: exocyst4.82E-02
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Gene type



Gene DE type