GO Enrichment Analysis of Co-expressed Genes with
AT5G54760
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 2 | GO:0001881: receptor recycling | 0.00E+00 |
| 3 | GO:0007530: sex determination | 0.00E+00 |
| 4 | GO:0006412: translation | 2.87E-81 |
| 5 | GO:0042254: ribosome biogenesis | 1.76E-31 |
| 6 | GO:0000027: ribosomal large subunit assembly | 3.31E-09 |
| 7 | GO:0000028: ribosomal small subunit assembly | 1.33E-05 |
| 8 | GO:1902626: assembly of large subunit precursor of preribosome | 2.16E-05 |
| 9 | GO:0006511: ubiquitin-dependent protein catabolic process | 9.40E-05 |
| 10 | GO:0043248: proteasome assembly | 1.88E-04 |
| 11 | GO:0009554: megasporogenesis | 2.54E-04 |
| 12 | GO:0009955: adaxial/abaxial pattern specification | 2.54E-04 |
| 13 | GO:0006475: internal protein amino acid acetylation | 3.70E-04 |
| 14 | GO:0015801: aromatic amino acid transport | 3.70E-04 |
| 15 | GO:0017198: N-terminal peptidyl-serine acetylation | 3.70E-04 |
| 16 | GO:0030490: maturation of SSU-rRNA | 3.70E-04 |
| 17 | GO:0018002: N-terminal peptidyl-glutamic acid acetylation | 3.70E-04 |
| 18 | GO:0009735: response to cytokinin | 5.57E-04 |
| 19 | GO:0051603: proteolysis involved in cellular protein catabolic process | 6.31E-04 |
| 20 | GO:0000387: spliceosomal snRNP assembly | 7.16E-04 |
| 21 | GO:0045905: positive regulation of translational termination | 8.05E-04 |
| 22 | GO:0045901: positive regulation of translational elongation | 8.05E-04 |
| 23 | GO:0043981: histone H4-K5 acetylation | 8.05E-04 |
| 24 | GO:0055129: L-proline biosynthetic process | 8.05E-04 |
| 25 | GO:0006452: translational frameshifting | 8.05E-04 |
| 26 | GO:0051788: response to misfolded protein | 8.05E-04 |
| 27 | GO:0016925: protein sumoylation | 1.10E-03 |
| 28 | GO:0006820: anion transport | 1.10E-03 |
| 29 | GO:0006626: protein targeting to mitochondrion | 1.24E-03 |
| 30 | GO:0000398: mRNA splicing, via spliceosome | 1.27E-03 |
| 31 | GO:0002181: cytoplasmic translation | 1.30E-03 |
| 32 | GO:0045793: positive regulation of cell size | 1.30E-03 |
| 33 | GO:0034227: tRNA thio-modification | 1.30E-03 |
| 34 | GO:0032940: secretion by cell | 1.30E-03 |
| 35 | GO:0008333: endosome to lysosome transport | 1.30E-03 |
| 36 | GO:0006168: adenine salvage | 1.88E-03 |
| 37 | GO:0071786: endoplasmic reticulum tubular network organization | 1.88E-03 |
| 38 | GO:0032877: positive regulation of DNA endoreduplication | 1.88E-03 |
| 39 | GO:0046836: glycolipid transport | 1.88E-03 |
| 40 | GO:0006166: purine ribonucleoside salvage | 1.88E-03 |
| 41 | GO:0070301: cellular response to hydrogen peroxide | 1.88E-03 |
| 42 | GO:0006241: CTP biosynthetic process | 1.88E-03 |
| 43 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.88E-03 |
| 44 | GO:0006165: nucleoside diphosphate phosphorylation | 1.88E-03 |
| 45 | GO:0006228: UTP biosynthetic process | 1.88E-03 |
| 46 | GO:0009647: skotomorphogenesis | 1.88E-03 |
| 47 | GO:0008283: cell proliferation | 2.40E-03 |
| 48 | GO:0051781: positive regulation of cell division | 2.52E-03 |
| 49 | GO:0042274: ribosomal small subunit biogenesis | 2.52E-03 |
| 50 | GO:0006183: GTP biosynthetic process | 2.52E-03 |
| 51 | GO:0009793: embryo development ending in seed dormancy | 2.85E-03 |
| 52 | GO:0046686: response to cadmium ion | 2.97E-03 |
| 53 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 3.23E-03 |
| 54 | GO:0007029: endoplasmic reticulum organization | 3.23E-03 |
| 55 | GO:0044209: AMP salvage | 3.23E-03 |
| 56 | GO:0042147: retrograde transport, endosome to Golgi | 3.30E-03 |
| 57 | GO:0006574: valine catabolic process | 3.99E-03 |
| 58 | GO:0006561: proline biosynthetic process | 3.99E-03 |
| 59 | GO:0006555: methionine metabolic process | 3.99E-03 |
| 60 | GO:0019509: L-methionine salvage from methylthioadenosine | 4.81E-03 |
| 61 | GO:1901001: negative regulation of response to salt stress | 4.81E-03 |
| 62 | GO:0000054: ribosomal subunit export from nucleus | 4.81E-03 |
| 63 | GO:0030163: protein catabolic process | 5.40E-03 |
| 64 | GO:0048528: post-embryonic root development | 5.68E-03 |
| 65 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 5.68E-03 |
| 66 | GO:0009690: cytokinin metabolic process | 6.61E-03 |
| 67 | GO:0031540: regulation of anthocyanin biosynthetic process | 6.61E-03 |
| 68 | GO:0006506: GPI anchor biosynthetic process | 6.61E-03 |
| 69 | GO:0048589: developmental growth | 8.60E-03 |
| 70 | GO:0098656: anion transmembrane transport | 8.60E-03 |
| 71 | GO:0046685: response to arsenic-containing substance | 8.60E-03 |
| 72 | GO:0009245: lipid A biosynthetic process | 8.60E-03 |
| 73 | GO:0030042: actin filament depolymerization | 9.67E-03 |
| 74 | GO:0010449: root meristem growth | 9.67E-03 |
| 75 | GO:0043069: negative regulation of programmed cell death | 1.08E-02 |
| 76 | GO:0048229: gametophyte development | 1.19E-02 |
| 77 | GO:0010015: root morphogenesis | 1.19E-02 |
| 78 | GO:0006913: nucleocytoplasmic transport | 1.19E-02 |
| 79 | GO:0015770: sucrose transport | 1.19E-02 |
| 80 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 1.32E-02 |
| 81 | GO:0008380: RNA splicing | 1.39E-02 |
| 82 | GO:0010628: positive regulation of gene expression | 1.44E-02 |
| 83 | GO:2000028: regulation of photoperiodism, flowering | 1.44E-02 |
| 84 | GO:0010102: lateral root morphogenesis | 1.44E-02 |
| 85 | GO:0007034: vacuolar transport | 1.57E-02 |
| 86 | GO:0006446: regulation of translational initiation | 1.57E-02 |
| 87 | GO:0048467: gynoecium development | 1.57E-02 |
| 88 | GO:0009965: leaf morphogenesis | 1.66E-02 |
| 89 | GO:0010167: response to nitrate | 1.70E-02 |
| 90 | GO:0006406: mRNA export from nucleus | 1.98E-02 |
| 91 | GO:0006289: nucleotide-excision repair | 1.98E-02 |
| 92 | GO:0006487: protein N-linked glycosylation | 1.98E-02 |
| 93 | GO:0009116: nucleoside metabolic process | 1.98E-02 |
| 94 | GO:0030150: protein import into mitochondrial matrix | 1.98E-02 |
| 95 | GO:0051302: regulation of cell division | 2.12E-02 |
| 96 | GO:0003333: amino acid transmembrane transport | 2.27E-02 |
| 97 | GO:0015992: proton transport | 2.27E-02 |
| 98 | GO:0051260: protein homooligomerization | 2.27E-02 |
| 99 | GO:0010431: seed maturation | 2.27E-02 |
| 100 | GO:0061077: chaperone-mediated protein folding | 2.27E-02 |
| 101 | GO:0007005: mitochondrion organization | 2.42E-02 |
| 102 | GO:0040007: growth | 2.58E-02 |
| 103 | GO:0010089: xylem development | 2.73E-02 |
| 104 | GO:0019722: calcium-mediated signaling | 2.73E-02 |
| 105 | GO:0000413: protein peptidyl-prolyl isomerization | 3.06E-02 |
| 106 | GO:0006606: protein import into nucleus | 3.06E-02 |
| 107 | GO:0015991: ATP hydrolysis coupled proton transport | 3.06E-02 |
| 108 | GO:0045454: cell redox homeostasis | 3.16E-02 |
| 109 | GO:0006662: glycerol ether metabolic process | 3.23E-02 |
| 110 | GO:0048825: cotyledon development | 3.57E-02 |
| 111 | GO:0009556: microsporogenesis | 3.57E-02 |
| 112 | GO:0006623: protein targeting to vacuole | 3.57E-02 |
| 113 | GO:0010183: pollen tube guidance | 3.57E-02 |
| 114 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.75E-02 |
| 115 | GO:0080156: mitochondrial mRNA modification | 3.75E-02 |
| 116 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.75E-02 |
| 117 | GO:0009408: response to heat | 4.09E-02 |
| 118 | GO:0006464: cellular protein modification process | 4.30E-02 |
| 119 | GO:0006914: autophagy | 4.30E-02 |
| 120 | GO:0010286: heat acclimation | 4.49E-02 |
| 121 | GO:0006413: translational initiation | 4.55E-02 |
| 122 | GO:0000910: cytokinesis | 4.68E-02 |
| 123 | GO:0006414: translational elongation | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004735: pyrroline-5-carboxylate reductase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 1.05E-101 |
| 3 | GO:0003729: mRNA binding | 4.02E-20 |
| 4 | GO:0004298: threonine-type endopeptidase activity | 3.30E-07 |
| 5 | GO:0019843: rRNA binding | 3.39E-05 |
| 6 | GO:0008097: 5S rRNA binding | 4.74E-05 |
| 7 | GO:0031386: protein tag | 1.31E-04 |
| 8 | GO:0008233: peptidase activity | 3.36E-04 |
| 9 | GO:1990189: peptide-serine-N-acetyltransferase activity | 3.70E-04 |
| 10 | GO:1990190: peptide-glutamate-N-acetyltransferase activity | 3.70E-04 |
| 11 | GO:0019786: Atg8-specific protease activity | 3.70E-04 |
| 12 | GO:0043022: ribosome binding | 4.14E-04 |
| 13 | GO:0015288: porin activity | 4.14E-04 |
| 14 | GO:0008308: voltage-gated anion channel activity | 5.06E-04 |
| 15 | GO:0001055: RNA polymerase II activity | 7.16E-04 |
| 16 | GO:0015173: aromatic amino acid transmembrane transporter activity | 8.05E-04 |
| 17 | GO:0019779: Atg8 activating enzyme activity | 8.05E-04 |
| 18 | GO:0001054: RNA polymerase I activity | 9.61E-04 |
| 19 | GO:0001056: RNA polymerase III activity | 1.10E-03 |
| 20 | GO:0008430: selenium binding | 1.30E-03 |
| 21 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 1.30E-03 |
| 22 | GO:0004550: nucleoside diphosphate kinase activity | 1.88E-03 |
| 23 | GO:0017089: glycolipid transporter activity | 1.88E-03 |
| 24 | GO:0003999: adenine phosphoribosyltransferase activity | 1.88E-03 |
| 25 | GO:0004576: oligosaccharyl transferase activity | 2.52E-03 |
| 26 | GO:0019776: Atg8 ligase activity | 2.52E-03 |
| 27 | GO:0016004: phospholipase activator activity | 2.52E-03 |
| 28 | GO:0010011: auxin binding | 2.52E-03 |
| 29 | GO:0051861: glycolipid binding | 2.52E-03 |
| 30 | GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 2.52E-03 |
| 31 | GO:0070628: proteasome binding | 2.52E-03 |
| 32 | GO:0005275: amine transmembrane transporter activity | 3.23E-03 |
| 33 | GO:0005496: steroid binding | 3.23E-03 |
| 34 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.23E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-03 |
| 36 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 3.99E-03 |
| 37 | GO:0031593: polyubiquitin binding | 3.99E-03 |
| 38 | GO:0031177: phosphopantetheine binding | 3.99E-03 |
| 39 | GO:0000035: acyl binding | 4.81E-03 |
| 40 | GO:0051920: peroxiredoxin activity | 4.81E-03 |
| 41 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 5.68E-03 |
| 42 | GO:0016209: antioxidant activity | 6.61E-03 |
| 43 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 6.61E-03 |
| 44 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.97E-03 |
| 45 | GO:0005515: protein binding | 1.02E-02 |
| 46 | GO:0003746: translation elongation factor activity | 1.14E-02 |
| 47 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 1.19E-02 |
| 48 | GO:0008327: methyl-CpG binding | 1.19E-02 |
| 49 | GO:0044183: protein binding involved in protein folding | 1.19E-02 |
| 50 | GO:0008794: arsenate reductase (glutaredoxin) activity | 1.19E-02 |
| 51 | GO:0008515: sucrose transmembrane transporter activity | 1.19E-02 |
| 52 | GO:0015266: protein channel activity | 1.44E-02 |
| 53 | GO:0051119: sugar transmembrane transporter activity | 1.70E-02 |
| 54 | GO:0003712: transcription cofactor activity | 1.70E-02 |
| 55 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.72E-02 |
| 56 | GO:0043130: ubiquitin binding | 1.98E-02 |
| 57 | GO:0005528: FK506 binding | 1.98E-02 |
| 58 | GO:0043424: protein histidine kinase binding | 2.12E-02 |
| 59 | GO:0047134: protein-disulfide reductase activity | 2.90E-02 |
| 60 | GO:0015035: protein disulfide oxidoreductase activity | 2.92E-02 |
| 61 | GO:0003713: transcription coactivator activity | 3.23E-02 |
| 62 | GO:0008080: N-acetyltransferase activity | 3.23E-02 |
| 63 | GO:0004791: thioredoxin-disulfide reductase activity | 3.40E-02 |
| 64 | GO:0004872: receptor activity | 3.57E-02 |
| 65 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.11E-02 |
| 66 | GO:0003684: damaged DNA binding | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005840: ribosome | 1.21E-69 |
| 3 | GO:0022626: cytosolic ribosome | 1.66E-65 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 3.88E-62 |
| 5 | GO:0022627: cytosolic small ribosomal subunit | 4.72E-45 |
| 6 | GO:0005737: cytoplasm | 5.02E-28 |
| 7 | GO:0005730: nucleolus | 4.32E-24 |
| 8 | GO:0005829: cytosol | 6.08E-22 |
| 9 | GO:0009506: plasmodesma | 3.97E-12 |
| 10 | GO:0005774: vacuolar membrane | 4.54E-11 |
| 11 | GO:0016020: membrane | 3.10E-10 |
| 12 | GO:0000502: proteasome complex | 7.23E-10 |
| 13 | GO:0015934: large ribosomal subunit | 1.19E-09 |
| 14 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.09E-07 |
| 15 | GO:0005839: proteasome core complex | 3.30E-07 |
| 16 | GO:0005773: vacuole | 3.71E-07 |
| 17 | GO:0005618: cell wall | 5.85E-06 |
| 18 | GO:0005665: DNA-directed RNA polymerase II, core complex | 7.16E-05 |
| 19 | GO:0019013: viral nucleocapsid | 8.76E-05 |
| 20 | GO:0005886: plasma membrane | 1.14E-04 |
| 21 | GO:0009507: chloroplast | 2.23E-04 |
| 22 | GO:0015935: small ribosomal subunit | 2.26E-04 |
| 23 | GO:0009510: plasmodesmatal desmotubule | 3.70E-04 |
| 24 | GO:0046930: pore complex | 5.06E-04 |
| 25 | GO:0005736: DNA-directed RNA polymerase I complex | 6.07E-04 |
| 26 | GO:0005666: DNA-directed RNA polymerase III complex | 7.16E-04 |
| 27 | GO:0071011: precatalytic spliceosome | 7.16E-04 |
| 28 | GO:0005681: spliceosomal complex | 7.73E-04 |
| 29 | GO:0035145: exon-exon junction complex | 8.05E-04 |
| 30 | GO:0031415: NatA complex | 8.05E-04 |
| 31 | GO:0000418: DNA-directed RNA polymerase IV complex | 8.35E-04 |
| 32 | GO:0071013: catalytic step 2 spliceosome | 9.61E-04 |
| 33 | GO:0008541: proteasome regulatory particle, lid subcomplex | 9.61E-04 |
| 34 | GO:0005788: endoplasmic reticulum lumen | 9.89E-04 |
| 35 | GO:0034719: SMN-Sm protein complex | 1.30E-03 |
| 36 | GO:0005750: mitochondrial respiratory chain complex III | 1.40E-03 |
| 37 | GO:0000419: DNA-directed RNA polymerase V complex | 1.74E-03 |
| 38 | GO:0071782: endoplasmic reticulum tubular network | 1.88E-03 |
| 39 | GO:0005775: vacuolar lumen | 1.88E-03 |
| 40 | GO:0033180: proton-transporting V-type ATPase, V1 domain | 1.88E-03 |
| 41 | GO:1990726: Lsm1-7-Pat1 complex | 1.88E-03 |
| 42 | GO:0005741: mitochondrial outer membrane | 2.35E-03 |
| 43 | GO:0005622: intracellular | 2.40E-03 |
| 44 | GO:0005776: autophagosome | 2.52E-03 |
| 45 | GO:0016471: vacuolar proton-transporting V-type ATPase complex | 2.52E-03 |
| 46 | GO:0005682: U5 snRNP | 2.52E-03 |
| 47 | GO:0005687: U4 snRNP | 3.23E-03 |
| 48 | GO:0097526: spliceosomal tri-snRNP complex | 3.23E-03 |
| 49 | GO:0008250: oligosaccharyltransferase complex | 3.23E-03 |
| 50 | GO:0005771: multivesicular body | 3.99E-03 |
| 51 | GO:0030904: retromer complex | 3.99E-03 |
| 52 | GO:0005689: U12-type spliceosomal complex | 4.81E-03 |
| 53 | GO:0016272: prefoldin complex | 4.81E-03 |
| 54 | GO:0071004: U2-type prespliceosome | 6.61E-03 |
| 55 | GO:0005688: U6 snRNP | 6.61E-03 |
| 56 | GO:0000421: autophagosome membrane | 6.61E-03 |
| 57 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 6.61E-03 |
| 58 | GO:0019773: proteasome core complex, alpha-subunit complex | 7.58E-03 |
| 59 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 7.58E-03 |
| 60 | GO:0005742: mitochondrial outer membrane translocase complex | 7.58E-03 |
| 61 | GO:0005685: U1 snRNP | 8.60E-03 |
| 62 | GO:0005686: U2 snRNP | 1.08E-02 |
| 63 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.19E-02 |
| 64 | GO:0005769: early endosome | 1.84E-02 |
| 65 | GO:0005758: mitochondrial intermembrane space | 1.98E-02 |
| 66 | GO:0045271: respiratory chain complex I | 2.12E-02 |
| 67 | GO:0070469: respiratory chain | 2.12E-02 |
| 68 | GO:0031410: cytoplasmic vesicle | 2.42E-02 |
| 69 | GO:0015629: actin cytoskeleton | 2.58E-02 |
| 70 | GO:0009504: cell plate | 3.57E-02 |
| 71 | GO:0005783: endoplasmic reticulum | 4.27E-02 |
| 72 | GO:0000932: P-body | 4.87E-02 |