co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54585

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:0000023: maltose metabolic process	1.18E-04
8	GO:0000025: maltose catabolic process	1.18E-04
9	GO:0051262: protein tetramerization	2.73E-04
10	GO:0005976: polysaccharide metabolic process	2.73E-04
11	GO:0031648: protein destabilization	2.73E-04
12	GO:0048281: inflorescence morphogenesis	4.52E-04
13	GO:0010623: programmed cell death involved in cell development	4.52E-04
14	GO:0010017: red or far-red light signaling pathway	5.29E-04
15	GO:0001944: vasculature development	5.76E-04
16	GO:1901000: regulation of response to salt stress	6.47E-04
17	GO:0030100: regulation of endocytosis	6.47E-04
18	GO:0010148: transpiration	6.47E-04
19	GO:0010321: regulation of vegetative phase change	6.47E-04
20	GO:0006808: regulation of nitrogen utilization	8.60E-04
21	GO:0015689: molybdate ion transport	8.60E-04
22	GO:0051322: anaphase	8.60E-04
23	GO:0010600: regulation of auxin biosynthetic process	8.60E-04
24	GO:0010508: positive regulation of autophagy	8.60E-04
25	GO:0015846: polyamine transport	8.60E-04
26	GO:0010021: amylopectin biosynthetic process	8.60E-04
27	GO:0006461: protein complex assembly	1.08E-03
28	GO:0006656: phosphatidylcholine biosynthetic process	1.08E-03
29	GO:0000470: maturation of LSU-rRNA	1.33E-03
30	GO:0009913: epidermal cell differentiation	1.33E-03
31	GO:0047484: regulation of response to osmotic stress	1.33E-03
32	GO:0009955: adaxial/abaxial pattern specification	1.59E-03
33	GO:0071470: cellular response to osmotic stress	1.59E-03
34	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.59E-03
35	GO:0010161: red light signaling pathway	1.87E-03
36	GO:0070370: cellular heat acclimation	1.87E-03
37	GO:0010103: stomatal complex morphogenesis	1.87E-03
38	GO:0009631: cold acclimation	2.04E-03
39	GO:0010928: regulation of auxin mediated signaling pathway	2.16E-03
40	GO:0005978: glycogen biosynthetic process	2.16E-03
41	GO:0006353: DNA-templated transcription, termination	2.16E-03
42	GO:0030091: protein repair	2.16E-03
43	GO:0009704: de-etiolation	2.16E-03
44	GO:0001558: regulation of cell growth	2.46E-03
45	GO:0032544: plastid translation	2.46E-03
46	GO:0009409: response to cold	2.68E-03
47	GO:0051865: protein autoubiquitination	2.78E-03
48	GO:0006783: heme biosynthetic process	2.78E-03
49	GO:0005982: starch metabolic process	3.12E-03
50	GO:0031627: telomeric loop formation	3.46E-03
51	GO:0006782: protoporphyrinogen IX biosynthetic process	3.46E-03
52	GO:0009773: photosynthetic electron transport in photosystem I	3.82E-03
53	GO:0006415: translational termination	3.82E-03
54	GO:0005983: starch catabolic process	4.19E-03
55	GO:0002213: defense response to insect	4.19E-03
56	GO:0043086: negative regulation of catalytic activity	4.54E-03
57	GO:0006094: gluconeogenesis	4.57E-03
58	GO:0010102: lateral root morphogenesis	4.57E-03
59	GO:0009691: cytokinin biosynthetic process	4.57E-03
60	GO:0009266: response to temperature stimulus	4.97E-03
61	GO:0008152: metabolic process	5.82E-03
62	GO:0009944: polarity specification of adaxial/abaxial axis	6.22E-03
63	GO:0006289: nucleotide-excision repair	6.22E-03
64	GO:0006979: response to oxidative stress	6.62E-03
65	GO:0051302: regulation of cell division	6.66E-03
66	GO:0019915: lipid storage	7.11E-03
67	GO:0061077: chaperone-mediated protein folding	7.11E-03
68	GO:0003333: amino acid transmembrane transport	7.11E-03
69	GO:0009058: biosynthetic process	7.20E-03
70	GO:0071456: cellular response to hypoxia	7.57E-03
71	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.57E-03
72	GO:0009686: gibberellin biosynthetic process	8.05E-03
73	GO:0010089: xylem development	8.53E-03
74	GO:0006284: base-excision repair	8.53E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.02E-03
76	GO:0006885: regulation of pH	1.00E-02
77	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.06E-02
78	GO:0048825: cotyledon development	1.11E-02
79	GO:0019252: starch biosynthetic process	1.11E-02
80	GO:1901657: glycosyl compound metabolic process	1.28E-02
81	GO:0006310: DNA recombination	1.33E-02
82	GO:0000910: cytokinesis	1.45E-02
83	GO:0009658: chloroplast organization	1.46E-02
84	GO:0016126: sterol biosynthetic process	1.51E-02
85	GO:0010027: thylakoid membrane organization	1.51E-02
86	GO:0015995: chlorophyll biosynthetic process	1.70E-02
87	GO:0080167: response to karrikin	1.82E-02
88	GO:0000160: phosphorelay signal transduction system	1.89E-02
89	GO:0009407: toxin catabolic process	1.96E-02
90	GO:0016051: carbohydrate biosynthetic process	2.16E-02
91	GO:0009640: photomorphogenesis	2.59E-02
92	GO:0008283: cell proliferation	2.59E-02
93	GO:0006281: DNA repair	2.68E-02
94	GO:0006629: lipid metabolic process	2.68E-02
95	GO:0006351: transcription, DNA-templated	2.80E-02
96	GO:0009636: response to toxic substance	2.81E-02
97	GO:0009965: leaf morphogenesis	2.81E-02
98	GO:0009664: plant-type cell wall organization	3.04E-02
99	GO:0006812: cation transport	3.04E-02
100	GO:0009585: red, far-red light phototransduction	3.20E-02
101	GO:0006813: potassium ion transport	3.20E-02
102	GO:0016567: protein ubiquitination	3.45E-02
103	GO:0006096: glycolytic process	3.60E-02
104	GO:0009740: gibberellic acid mediated signaling pathway	3.94E-02
105	GO:0009742: brassinosteroid mediated signaling pathway	4.28E-02
106	GO:0006355: regulation of transcription, DNA-templated	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0005227: calcium activated cation channel activity	1.18E-04
5	GO:0004105: choline-phosphate cytidylyltransferase activity	1.18E-04
6	GO:0004853: uroporphyrinogen decarboxylase activity	1.18E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	1.18E-04
8	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.18E-04
9	GO:0047372: acylglycerol lipase activity	1.91E-04
10	GO:0010297: heteropolysaccharide binding	2.73E-04
11	GO:0047216: inositol 3-alpha-galactosyltransferase activity	2.73E-04
12	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.73E-04
13	GO:0043169: cation binding	4.52E-04
14	GO:0017150: tRNA dihydrouridine synthase activity	4.52E-04
15	GO:0017108: 5'-flap endonuclease activity	4.52E-04
16	GO:0015203: polyamine transmembrane transporter activity	6.47E-04
17	GO:0016149: translation release factor activity, codon specific	6.47E-04
18	GO:0019104: DNA N-glycosylase activity	8.60E-04
19	GO:0004506: squalene monooxygenase activity	8.60E-04
20	GO:0019199: transmembrane receptor protein kinase activity	8.60E-04
21	GO:0015098: molybdate ion transmembrane transporter activity	8.60E-04
22	GO:0042277: peptide binding	8.60E-04
23	GO:2001070: starch binding	1.33E-03
24	GO:0004332: fructose-bisphosphate aldolase activity	1.33E-03
25	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.59E-03
26	GO:0005261: cation channel activity	1.59E-03
27	GO:0016831: carboxy-lyase activity	1.87E-03
28	GO:0004033: aldo-keto reductase (NADP) activity	2.16E-03
29	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.23E-03
30	GO:0003747: translation release factor activity	2.78E-03
31	GO:0015174: basic amino acid transmembrane transporter activity	3.12E-03
32	GO:0044183: protein binding involved in protein folding	3.82E-03
33	GO:0003691: double-stranded telomeric DNA binding	3.82E-03
34	GO:0004565: beta-galactosidase activity	4.57E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	4.57E-03
36	GO:0030570: pectate lyase activity	8.05E-03
37	GO:0046910: pectinesterase inhibitor activity	8.79E-03
38	GO:0005451: monovalent cation:proton antiporter activity	9.53E-03
39	GO:0003713: transcription coactivator activity	1.00E-02
40	GO:0015299: solute:proton antiporter activity	1.06E-02
41	GO:0048038: quinone binding	1.16E-02
42	GO:0004518: nuclease activity	1.22E-02
43	GO:0000156: phosphorelay response regulator activity	1.28E-02
44	GO:0015385: sodium:proton antiporter activity	1.28E-02
45	GO:0003684: damaged DNA binding	1.33E-02
46	GO:0016597: amino acid binding	1.45E-02
47	GO:0050660: flavin adenine dinucleotide binding	1.69E-02
48	GO:0102483: scopolin beta-glucosidase activity	1.70E-02
49	GO:0061630: ubiquitin protein ligase activity	1.91E-02
50	GO:0016787: hydrolase activity	2.06E-02
51	GO:0004871: signal transducer activity	2.28E-02
52	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.30E-02
53	GO:0008422: beta-glucosidase activity	2.30E-02
54	GO:0004364: glutathione transferase activity	2.51E-02
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.61E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	2.73E-02
57	GO:0043621: protein self-association	2.73E-02
58	GO:0015293: symporter activity	2.81E-02
59	GO:0016491: oxidoreductase activity	3.66E-02
60	GO:0008289: lipid binding	3.73E-02
61	GO:0016758: transferase activity, transferring hexosyl groups	4.73E-02
62	GO:0019843: rRNA binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0009507: chloroplast	5.79E-05
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.14E-04
4	GO:0009535: chloroplast thylakoid membrane	4.89E-04
5	GO:0010287: plastoglobule	8.68E-04
6	GO:0005798: Golgi-associated vesicle	1.33E-03
7	GO:0009501: amyloplast	2.16E-03
8	GO:0000783: nuclear telomere cap complex	2.46E-03
9	GO:0009534: chloroplast thylakoid	2.99E-03
10	GO:0009574: preprophase band	4.57E-03
11	GO:0005769: early endosome	5.79E-03
12	GO:0009570: chloroplast stroma	1.47E-02
13	GO:0031977: thylakoid lumen	2.44E-02
14	GO:0031966: mitochondrial membrane	3.04E-02
15	GO:0009536: plastid	3.35E-02
16	GO:0012505: endomembrane system	4.02E-02
17	GO:0009543: chloroplast thylakoid lumen	4.82E-02
18	GO:0009524: phragmoplast	5.00E-02