co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046967: cytosol to ER transport	0.00E+00
2	GO:0009268: response to pH	0.00E+00
3	GO:2001143: N-methylnicotinate transport	0.00E+00
4	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
5	GO:0006862: nucleotide transport	0.00E+00
6	GO:2001142: nicotinate transport	0.00E+00
7	GO:0060416: response to growth hormone	0.00E+00
8	GO:0009611: response to wounding	3.47E-07
9	GO:0009753: response to jasmonic acid	8.33E-07
10	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	2.15E-06
11	GO:1903507: negative regulation of nucleic acid-templated transcription	2.94E-06
12	GO:0034440: lipid oxidation	9.64E-06
13	GO:0009695: jasmonic acid biosynthetic process	1.26E-05
14	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.72E-05
15	GO:0080086: stamen filament development	3.43E-05
16	GO:0010200: response to chitin	5.04E-05
17	GO:0010112: regulation of systemic acquired resistance	9.49E-05
18	GO:0009835: fruit ripening	9.49E-05
19	GO:0007229: integrin-mediated signaling pathway	1.04E-04
20	GO:0006952: defense response	2.18E-04
21	GO:0080148: negative regulation of response to water deprivation	2.44E-04
22	GO:0046939: nucleotide phosphorylation	2.44E-04
23	GO:0042754: negative regulation of circadian rhythm	2.44E-04
24	GO:0006741: NADP biosynthetic process	2.44E-04
25	GO:0009901: anther dehiscence	2.74E-04
26	GO:0009809: lignin biosynthetic process	3.65E-04
27	GO:0019674: NAD metabolic process	4.05E-04
28	GO:0031408: oxylipin biosynthetic process	4.13E-04
29	GO:0040007: growth	4.92E-04
30	GO:0009693: ethylene biosynthetic process	4.92E-04
31	GO:0080024: indolebutyric acid metabolic process	5.82E-04
32	GO:0019363: pyridine nucleotide biosynthetic process	5.82E-04
33	GO:0043207: response to external biotic stimulus	5.82E-04
34	GO:0009399: nitrogen fixation	5.82E-04
35	GO:0002679: respiratory burst involved in defense response	5.82E-04
36	GO:0033014: tetrapyrrole biosynthetic process	5.82E-04
37	GO:0048653: anther development	6.23E-04
38	GO:0009694: jasmonic acid metabolic process	7.73E-04
39	GO:0006085: acetyl-CoA biosynthetic process	7.73E-04
40	GO:0006749: glutathione metabolic process	7.73E-04
41	GO:0015867: ATP transport	7.73E-04
42	GO:0045324: late endosome to vacuole transport	7.73E-04
43	GO:0045487: gibberellin catabolic process	9.77E-04
44	GO:0015691: cadmium ion transport	1.19E-03
45	GO:0015866: ADP transport	1.19E-03
46	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.19E-03
47	GO:0006828: manganese ion transport	1.19E-03
48	GO:1900425: negative regulation of defense response to bacterium	1.19E-03
49	GO:0009617: response to bacterium	1.40E-03
50	GO:0009407: toxin catabolic process	1.66E-03
51	GO:1900057: positive regulation of leaf senescence	1.67E-03
52	GO:0071669: plant-type cell wall organization or biogenesis	1.67E-03
53	GO:0015937: coenzyme A biosynthetic process	1.67E-03
54	GO:0009850: auxin metabolic process	1.93E-03
55	GO:0009704: de-etiolation	1.93E-03
56	GO:0045010: actin nucleation	1.93E-03
57	GO:0045893: positive regulation of transcription, DNA-templated	2.15E-03
58	GO:0006839: mitochondrial transport	2.16E-03
59	GO:0009699: phenylpropanoid biosynthetic process	2.21E-03
60	GO:0009932: cell tip growth	2.21E-03
61	GO:0090333: regulation of stomatal closure	2.49E-03
62	GO:0006783: heme biosynthetic process	2.49E-03
63	GO:0051865: protein autoubiquitination	2.49E-03
64	GO:0009636: response to toxic substance	2.73E-03
65	GO:0046777: protein autophosphorylation	2.78E-03
66	GO:0006779: porphyrin-containing compound biosynthetic process	2.79E-03
67	GO:0009086: methionine biosynthetic process	2.79E-03
68	GO:0031347: regulation of defense response	2.94E-03
69	GO:0006535: cysteine biosynthetic process from serine	3.10E-03
70	GO:0048829: root cap development	3.10E-03
71	GO:0006896: Golgi to vacuole transport	3.10E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	3.10E-03
73	GO:0006816: calcium ion transport	3.42E-03
74	GO:0015770: sucrose transport	3.42E-03
75	GO:0018107: peptidyl-threonine phosphorylation	4.09E-03
76	GO:0009620: response to fungus	4.24E-03
77	GO:0034605: cellular response to heat	4.44E-03
78	GO:0090351: seedling development	4.80E-03
79	GO:0005985: sucrose metabolic process	4.80E-03
80	GO:0019344: cysteine biosynthetic process	5.56E-03
81	GO:0016998: cell wall macromolecule catabolic process	6.35E-03
82	GO:0098542: defense response to other organism	6.35E-03
83	GO:0048278: vesicle docking	6.35E-03
84	GO:0009686: gibberellin biosynthetic process	7.18E-03
85	GO:0006817: phosphate ion transport	7.61E-03
86	GO:0000271: polysaccharide biosynthetic process	8.49E-03
87	GO:0009555: pollen development	8.64E-03
88	GO:0048544: recognition of pollen	9.42E-03
89	GO:0061025: membrane fusion	9.42E-03
90	GO:0009749: response to glucose	9.90E-03
91	GO:0006623: protein targeting to vacuole	9.90E-03
92	GO:0006635: fatty acid beta-oxidation	1.04E-02
93	GO:0002229: defense response to oomycetes	1.04E-02
94	GO:0010193: response to ozone	1.04E-02
95	GO:0010583: response to cyclopentenone	1.09E-02
96	GO:0055085: transmembrane transport	1.17E-02
97	GO:0019760: glucosinolate metabolic process	1.19E-02
98	GO:0009639: response to red or far red light	1.19E-02
99	GO:0009658: chloroplast organization	1.24E-02
100	GO:0006970: response to osmotic stress	1.34E-02
101	GO:0001666: response to hypoxia	1.35E-02
102	GO:0009607: response to biotic stimulus	1.40E-02
103	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.40E-02
104	GO:0006906: vesicle fusion	1.45E-02
105	GO:0006468: protein phosphorylation	1.47E-02
106	GO:0015995: chlorophyll biosynthetic process	1.51E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.59E-02
108	GO:0009737: response to abscisic acid	1.60E-02
109	GO:0030244: cellulose biosynthetic process	1.62E-02
110	GO:0008219: cell death	1.62E-02
111	GO:0009832: plant-type cell wall biogenesis	1.68E-02
112	GO:0010311: lateral root formation	1.68E-02
113	GO:0048527: lateral root development	1.80E-02
114	GO:0006865: amino acid transport	1.86E-02
115	GO:0006886: intracellular protein transport	1.90E-02
116	GO:0009867: jasmonic acid mediated signaling pathway	1.92E-02
117	GO:0009414: response to water deprivation	2.05E-02
118	GO:0042742: defense response to bacterium	2.11E-02
119	GO:0030001: metal ion transport	2.11E-02
120	GO:0006979: response to oxidative stress	2.13E-02
121	GO:0009644: response to high light intensity	2.43E-02
122	GO:0006855: drug transmembrane transport	2.57E-02
123	GO:0010224: response to UV-B	2.91E-02
124	GO:0009873: ethylene-activated signaling pathway	2.94E-02
125	GO:0009409: response to cold	3.09E-02
126	GO:0009651: response to salt stress	3.13E-02
127	GO:0006810: transport	3.41E-02
128	GO:0006351: transcription, DNA-templated	3.66E-02
129	GO:0018105: peptidyl-serine phosphorylation	3.73E-02
130	GO:0009845: seed germination	4.54E-02
131	GO:0007275: multicellular organism development	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:1990206: jasmonyl-Ile conjugate hydrolase activity	0.00E+00
2	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
3	GO:0061798: GTP 3',8'-cyclase activity	0.00E+00
4	GO:0090416: nicotinate transporter activity	0.00E+00
5	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
6	GO:0005522: profilin binding	0.00E+00
7	GO:0016165: linoleate 13S-lipoxygenase activity	2.15E-06
8	GO:0003714: transcription corepressor activity	1.06E-05
9	GO:0016621: cinnamoyl-CoA reductase activity	4.66E-05
10	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.06E-05
11	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.04E-04
12	GO:0042736: NADH kinase activity	1.04E-04
13	GO:0008883: glutamyl-tRNA reductase activity	2.44E-04
14	GO:0004594: pantothenate kinase activity	2.44E-04
15	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	2.44E-04
16	GO:0046423: allene-oxide cyclase activity	4.05E-04
17	GO:0010178: IAA-amino acid conjugate hydrolase activity	5.82E-04
18	GO:0009001: serine O-acetyltransferase activity	5.82E-04
19	GO:0019201: nucleotide kinase activity	5.82E-04
20	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	5.82E-04
21	GO:0050662: coenzyme binding	7.18E-04
22	GO:0015368: calcium:cation antiporter activity	7.73E-04
23	GO:0015369: calcium:proton antiporter activity	7.73E-04
24	GO:0043015: gamma-tubulin binding	7.73E-04
25	GO:0004356: glutamate-ammonia ligase activity	9.77E-04
26	GO:0008200: ion channel inhibitor activity	1.19E-03
27	GO:0005347: ATP transmembrane transporter activity	1.43E-03
28	GO:0015217: ADP transmembrane transporter activity	1.43E-03
29	GO:0051753: mannan synthase activity	1.43E-03
30	GO:0004017: adenylate kinase activity	1.43E-03
31	GO:0008506: sucrose:proton symporter activity	1.67E-03
32	GO:0052747: sinapyl alcohol dehydrogenase activity	1.93E-03
33	GO:0003951: NAD+ kinase activity	2.21E-03
34	GO:0004672: protein kinase activity	2.31E-03
35	GO:0004364: glutathione transferase activity	2.34E-03
36	GO:0047617: acyl-CoA hydrolase activity	2.79E-03
37	GO:0008515: sucrose transmembrane transporter activity	3.42E-03
38	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.75E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.44E-03
40	GO:0004867: serine-type endopeptidase inhibitor activity	4.80E-03
41	GO:0004674: protein serine/threonine kinase activity	6.12E-03
42	GO:0030170: pyridoxal phosphate binding	6.43E-03
43	GO:0015144: carbohydrate transmembrane transporter activity	6.93E-03
44	GO:0016760: cellulose synthase (UDP-forming) activity	7.18E-03
45	GO:0022891: substrate-specific transmembrane transporter activity	7.18E-03
46	GO:0005351: sugar:proton symporter activity	7.81E-03
47	GO:0016853: isomerase activity	9.42E-03
48	GO:0051015: actin filament binding	1.14E-02
49	GO:0016759: cellulose synthase activity	1.19E-02
50	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.24E-02
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.24E-02
52	GO:0008237: metallopeptidase activity	1.24E-02
53	GO:0005524: ATP binding	1.29E-02
54	GO:0008375: acetylglucosaminyltransferase activity	1.45E-02
55	GO:0000149: SNARE binding	2.04E-02
56	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.04E-02
57	GO:0050661: NADP binding	2.11E-02
58	GO:0051539: 4 iron, 4 sulfur cluster binding	2.11E-02
59	GO:0005484: SNAP receptor activity	2.30E-02
60	GO:0043621: protein self-association	2.43E-02
61	GO:0015293: symporter activity	2.50E-02
62	GO:0016301: kinase activity	2.61E-02
63	GO:0016298: lipase activity	2.91E-02
64	GO:0015171: amino acid transmembrane transporter activity	3.06E-02
65	GO:0022857: transmembrane transporter activity	3.50E-02
66	GO:0003779: actin binding	3.58E-02

Rank	GO Term	Adjusted P value
1	GO:0019008: molybdopterin synthase complex	1.04E-04
2	GO:0005911: cell-cell junction	1.04E-04
3	GO:0030140: trans-Golgi network transport vesicle	1.19E-03
4	GO:0005779: integral component of peroxisomal membrane	2.21E-03
5	GO:0005886: plasma membrane	2.51E-03
6	GO:0090404: pollen tube tip	3.42E-03
7	GO:0030136: clathrin-coated vesicle	8.05E-03
8	GO:0005770: late endosome	8.95E-03
9	GO:0046658: anchored component of plasma membrane	1.06E-02
10	GO:0005737: cytoplasm	1.43E-02
11	GO:0009707: chloroplast outer membrane	1.62E-02
12	GO:0005743: mitochondrial inner membrane	2.12E-02
13	GO:0031902: late endosome membrane	2.17E-02
14	GO:0031201: SNARE complex	2.17E-02
15	GO:0090406: pollen tube	2.30E-02
16	GO:0012505: endomembrane system	3.58E-02
17	GO:0009706: chloroplast inner membrane	3.66E-02
18	GO:0005623: cell	4.37E-02
19	GO:0016021: integral component of membrane	4.55E-02