co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080052: response to histidine	0.00E+00
2	GO:0044237: cellular metabolic process	0.00E+00
3	GO:0080053: response to phenylalanine	0.00E+00
4	GO:0045730: respiratory burst	0.00E+00
5	GO:0043201: response to leucine	0.00E+00
6	GO:0090069: regulation of ribosome biogenesis	0.00E+00
7	GO:0009073: aromatic amino acid family biosynthetic process	2.49E-07
8	GO:0009423: chorismate biosynthetic process	6.19E-06
9	GO:2000232: regulation of rRNA processing	3.64E-05
10	GO:0043609: regulation of carbon utilization	3.64E-05
11	GO:0080173: male-female gamete recognition during double fertilization	3.64E-05
12	GO:1902182: shoot apical meristem development	3.64E-05
13	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.09E-05
14	GO:0042939: tripeptide transport	9.09E-05
15	GO:0031538: negative regulation of anthocyanin metabolic process	9.09E-05
16	GO:0009805: coumarin biosynthetic process	9.09E-05
17	GO:0051262: protein tetramerization	9.09E-05
18	GO:0034470: ncRNA processing	9.09E-05
19	GO:0019521: D-gluconate metabolic process	9.09E-05
20	GO:0019632: shikimate metabolic process	9.09E-05
21	GO:0009561: megagametogenesis	1.31E-04
22	GO:0071329: cellular response to sucrose stimulus	2.33E-04
23	GO:0043967: histone H4 acetylation	2.33E-04
24	GO:0033356: UDP-L-arabinose metabolic process	3.14E-04
25	GO:0042938: dipeptide transport	3.14E-04
26	GO:0080037: negative regulation of cytokinin-activated signaling pathway	3.14E-04
27	GO:2000762: regulation of phenylpropanoid metabolic process	4.01E-04
28	GO:0043966: histone H3 acetylation	5.88E-04
29	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.88E-04
30	GO:0015977: carbon fixation	5.88E-04
31	GO:0071669: plant-type cell wall organization or biogenesis	6.87E-04
32	GO:0098869: cellular oxidant detoxification	6.87E-04
33	GO:0006368: transcription elongation from RNA polymerase II promoter	6.87E-04
34	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	7.90E-04
35	GO:0030162: regulation of proteolysis	7.90E-04
36	GO:0000028: ribosomal small subunit assembly	7.90E-04
37	GO:0010928: regulation of auxin mediated signaling pathway	7.90E-04
38	GO:0035265: organ growth	7.90E-04
39	GO:0009809: lignin biosynthetic process	8.60E-04
40	GO:0006364: rRNA processing	8.60E-04
41	GO:0009808: lignin metabolic process	8.97E-04
42	GO:2000024: regulation of leaf development	1.01E-03
43	GO:0006754: ATP biosynthetic process	1.01E-03
44	GO:0007338: single fertilization	1.01E-03
45	GO:0006098: pentose-phosphate shunt	1.01E-03
46	GO:0008202: steroid metabolic process	1.12E-03
47	GO:0009553: embryo sac development	1.17E-03
48	GO:0006032: chitin catabolic process	1.24E-03
49	GO:0055046: microgametogenesis	1.62E-03
50	GO:0006413: translational initiation	1.90E-03
51	GO:0080147: root hair cell development	2.18E-03
52	GO:0016998: cell wall macromolecule catabolic process	2.48E-03
53	GO:0048511: rhythmic process	2.48E-03
54	GO:0008284: positive regulation of cell proliferation	3.13E-03
55	GO:0042254: ribosome biogenesis	3.19E-03
56	GO:0034220: ion transmembrane transport	3.30E-03
57	GO:0010501: RNA secondary structure unwinding	3.30E-03
58	GO:0006342: chromatin silencing	3.47E-03
59	GO:0009741: response to brassinosteroid	3.47E-03
60	GO:0006979: response to oxidative stress	3.66E-03
61	GO:0048366: leaf development	3.68E-03
62	GO:0009567: double fertilization forming a zygote and endosperm	4.56E-03
63	GO:0006629: lipid metabolic process	5.69E-03
64	GO:0005975: carbohydrate metabolic process	6.15E-03
65	GO:0030244: cellulose biosynthetic process	6.18E-03
66	GO:0046686: response to cadmium ion	6.36E-03
67	GO:0009832: plant-type cell wall biogenesis	6.39E-03
68	GO:0010043: response to zinc ion	6.83E-03
69	GO:0006099: tricarboxylic acid cycle	7.51E-03
70	GO:0042542: response to hydrogen peroxide	8.44E-03
71	GO:0008283: cell proliferation	8.68E-03
72	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.93E-03
73	GO:0009555: pollen development	1.01E-02
74	GO:0009664: plant-type cell wall organization	1.02E-02
75	GO:0042538: hyperosmotic salinity response	1.02E-02
76	GO:0009611: response to wounding	1.03E-02
77	GO:0009793: embryo development ending in seed dormancy	1.05E-02
78	GO:0006857: oligopeptide transport	1.12E-02
79	GO:0009909: regulation of flower development	1.15E-02
80	GO:0006096: glycolytic process	1.20E-02
81	GO:0009620: response to fungus	1.29E-02
82	GO:0042545: cell wall modification	1.34E-02
83	GO:0006396: RNA processing	1.40E-02
84	GO:0042744: hydrogen peroxide catabolic process	1.76E-02
85	GO:0009790: embryo development	1.80E-02
86	GO:0016036: cellular response to phosphate starvation	1.92E-02
87	GO:0045490: pectin catabolic process	2.02E-02
88	GO:0042742: defense response to bacterium	2.05E-02
89	GO:0071555: cell wall organization	2.05E-02
90	GO:0009451: RNA modification	2.06E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.19E-02
92	GO:0010468: regulation of gene expression	2.29E-02
93	GO:0080167: response to karrikin	3.22E-02
94	GO:0015979: photosynthesis	3.54E-02
95	GO:0006869: lipid transport	3.91E-02
96	GO:0032259: methylation	4.12E-02
97	GO:0009751: response to salicylic acid	4.20E-02
98	GO:0009737: response to abscisic acid	4.36E-02
99	GO:0009753: response to jasmonic acid	4.46E-02
100	GO:0008152: metabolic process	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0004107: chorismate synthase activity	0.00E+00
2	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
3	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
4	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
5	GO:0004622: lysophospholipase activity	0.00E+00
6	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
7	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	3.64E-05
8	GO:0052691: UDP-arabinopyranose mutase activity	9.09E-05
9	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	9.09E-05
10	GO:0042937: tripeptide transporter activity	9.09E-05
11	GO:0032934: sterol binding	9.09E-05
12	GO:0008964: phosphoenolpyruvate carboxylase activity	1.58E-04
13	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.58E-04
14	GO:0000993: RNA polymerase II core binding	3.14E-04
15	GO:0016866: intramolecular transferase activity	3.14E-04
16	GO:0042936: dipeptide transporter activity	3.14E-04
17	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.88E-04
18	GO:0004656: procollagen-proline 4-dioxygenase activity	5.88E-04
19	GO:0030515: snoRNA binding	6.87E-04
20	GO:0004564: beta-fructofuranosidase activity	7.90E-04
21	GO:0008142: oxysterol binding	8.97E-04
22	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.01E-03
23	GO:0030955: potassium ion binding	1.12E-03
24	GO:0004743: pyruvate kinase activity	1.12E-03
25	GO:0004575: sucrose alpha-glucosidase activity	1.12E-03
26	GO:0004568: chitinase activity	1.24E-03
27	GO:0008171: O-methyltransferase activity	1.24E-03
28	GO:0004022: alcohol dehydrogenase (NAD) activity	1.62E-03
29	GO:0004535: poly(A)-specific ribonuclease activity	1.76E-03
30	GO:0043130: ubiquitin binding	2.18E-03
31	GO:0003743: translation initiation factor activity	2.37E-03
32	GO:0004540: ribonuclease activity	2.48E-03
33	GO:0016760: cellulose synthase (UDP-forming) activity	2.80E-03
34	GO:0004402: histone acetyltransferase activity	3.30E-03
35	GO:0003713: transcription coactivator activity	3.47E-03
36	GO:0010181: FMN binding	3.64E-03
37	GO:0015250: water channel activity	5.15E-03
38	GO:0004004: ATP-dependent RNA helicase activity	5.76E-03
39	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.28E-03
40	GO:0042393: histone binding	7.97E-03
41	GO:0050661: NADP binding	7.97E-03
42	GO:0000166: nucleotide binding	1.01E-02
43	GO:0031625: ubiquitin protein ligase binding	1.15E-02
44	GO:0045330: aspartyl esterase activity	1.15E-02
45	GO:0005515: protein binding	1.23E-02
46	GO:0004650: polygalacturonase activity	1.29E-02
47	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.29E-02
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.29E-02
49	GO:0030599: pectinesterase activity	1.32E-02
50	GO:0003723: RNA binding	1.37E-02
51	GO:0008026: ATP-dependent helicase activity	1.43E-02
52	GO:0004386: helicase activity	1.46E-02
53	GO:0016829: lyase activity	1.70E-02
54	GO:0046910: pectinesterase inhibitor activity	1.92E-02
55	GO:0008194: UDP-glycosyltransferase activity	2.19E-02
56	GO:0000287: magnesium ion binding	2.72E-02
57	GO:0004601: peroxidase activity	2.76E-02
58	GO:0016301: kinase activity	4.25E-02
59	GO:0016787: hydrolase activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005730: nucleolus	7.30E-09
3	GO:0008023: transcription elongation factor complex	3.64E-05
4	GO:0000138: Golgi trans cisterna	3.64E-05
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	3.64E-05
6	GO:0070545: PeBoW complex	9.09E-05
7	GO:0005618: cell wall	2.31E-04
8	GO:0033588: Elongator holoenzyme complex	2.33E-04
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.86E-04
10	GO:0005851: eukaryotic translation initiation factor 2B complex	4.92E-04
11	GO:0000123: histone acetyltransferase complex	6.87E-04
12	GO:0005829: cytosol	8.40E-04
13	GO:0005654: nucleoplasm	1.45E-03
14	GO:0032040: small-subunit processome	1.49E-03
15	GO:0005795: Golgi stack	1.89E-03
16	GO:0005770: late endosome	3.47E-03
17	GO:0071944: cell periphery	4.37E-03
18	GO:0030529: intracellular ribonucleoprotein complex	5.15E-03
19	GO:0019005: SCF ubiquitin ligase complex	6.18E-03
20	GO:0015934: large ribosomal subunit	6.83E-03
21	GO:0005834: heterotrimeric G-protein complex	1.26E-02
22	GO:0048046: apoplast	1.86E-02
23	GO:0005576: extracellular region	2.44E-02
24	GO:0009536: plastid	2.52E-02
25	GO:0022625: cytosolic large ribosomal subunit	3.34E-02
26	GO:0016020: membrane	3.82E-02
27	GO:0009570: chloroplast stroma	3.89E-02
28	GO:0043231: intracellular membrane-bounded organelle	4.55E-02
29	GO:0005794: Golgi apparatus	4.66E-02