Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032928: regulation of superoxide anion generation0.00E+00
2GO:0009106: lipoate metabolic process0.00E+00
3GO:0036172: thiamine salvage0.00E+00
4GO:0046085: adenosine metabolic process0.00E+00
5GO:0006044: N-acetylglucosamine metabolic process0.00E+00
6GO:0034053: modulation by symbiont of host defense-related programmed cell death0.00E+00
7GO:0045740: positive regulation of DNA replication0.00E+00
8GO:0006720: isoprenoid metabolic process0.00E+00
9GO:0048870: cell motility0.00E+00
10GO:0009249: protein lipoylation0.00E+00
11GO:0032780: negative regulation of ATPase activity0.00E+00
12GO:0015822: ornithine transport0.00E+00
13GO:0016226: iron-sulfur cluster assembly2.22E-04
14GO:0016031: tRNA import into mitochondrion3.44E-04
15GO:0009240: isopentenyl diphosphate biosynthetic process3.44E-04
16GO:0043407: negative regulation of MAP kinase activity3.44E-04
17GO:0031468: nuclear envelope reassembly3.44E-04
18GO:1990542: mitochondrial transmembrane transport3.44E-04
19GO:0000066: mitochondrial ornithine transport3.44E-04
20GO:0097502: mannosylation3.44E-04
21GO:0006567: threonine catabolic process3.44E-04
22GO:0016487: farnesol metabolic process3.44E-04
23GO:0016560: protein import into peroxisome matrix, docking7.51E-04
24GO:0007163: establishment or maintenance of cell polarity7.51E-04
25GO:0006432: phenylalanyl-tRNA aminoacylation7.51E-04
26GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation7.51E-04
27GO:2000071: regulation of defense response by callose deposition7.51E-04
28GO:0019441: tryptophan catabolic process to kynurenine7.51E-04
29GO:0050992: dimethylallyl diphosphate biosynthetic process7.51E-04
30GO:0016122: xanthophyll metabolic process7.51E-04
31GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.21E-03
32GO:0006591: ornithine metabolic process1.21E-03
33GO:0034051: negative regulation of plant-type hypersensitive response1.21E-03
34GO:0043617: cellular response to sucrose starvation1.21E-03
35GO:0009150: purine ribonucleotide metabolic process1.21E-03
36GO:0071492: cellular response to UV-A1.21E-03
37GO:0006760: folic acid-containing compound metabolic process1.21E-03
38GO:0010476: gibberellin mediated signaling pathway1.21E-03
39GO:0010325: raffinose family oligosaccharide biosynthetic process1.21E-03
40GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.21E-03
41GO:0048527: lateral root development1.35E-03
42GO:0009647: skotomorphogenesis1.75E-03
43GO:0009399: nitrogen fixation1.75E-03
44GO:1901332: negative regulation of lateral root development1.75E-03
45GO:0009963: positive regulation of flavonoid biosynthetic process1.75E-03
46GO:0006516: glycoprotein catabolic process1.75E-03
47GO:0006221: pyrimidine nucleotide biosynthetic process2.35E-03
48GO:0006625: protein targeting to peroxisome2.35E-03
49GO:0009649: entrainment of circadian clock2.35E-03
50GO:0008295: spermidine biosynthetic process2.35E-03
51GO:0044205: 'de novo' UMP biosynthetic process2.35E-03
52GO:0006749: glutathione metabolic process2.35E-03
53GO:0034613: cellular protein localization2.35E-03
54GO:0009165: nucleotide biosynthetic process2.35E-03
55GO:0006542: glutamine biosynthetic process2.35E-03
56GO:0015976: carbon utilization2.35E-03
57GO:0006545: glycine biosynthetic process2.35E-03
58GO:0071486: cellular response to high light intensity2.35E-03
59GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.35E-03
60GO:0009765: photosynthesis, light harvesting2.35E-03
61GO:0071249: cellular response to nitrate2.35E-03
62GO:0006012: galactose metabolic process2.52E-03
63GO:0030041: actin filament polymerization3.00E-03
64GO:0010117: photoprotection3.00E-03
65GO:0046283: anthocyanin-containing compound metabolic process3.00E-03
66GO:0006544: glycine metabolic process3.00E-03
67GO:0009229: thiamine diphosphate biosynthetic process3.00E-03
68GO:0009107: lipoate biosynthetic process3.00E-03
69GO:0015991: ATP hydrolysis coupled proton transport3.20E-03
70GO:0006520: cellular amino acid metabolic process3.45E-03
71GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity3.71E-03
72GO:0031053: primary miRNA processing3.71E-03
73GO:0034314: Arp2/3 complex-mediated actin nucleation3.71E-03
74GO:0045962: positive regulation of development, heterochronic3.71E-03
75GO:0006796: phosphate-containing compound metabolic process3.71E-03
76GO:0042793: transcription from plastid promoter3.71E-03
77GO:0033365: protein localization to organelle3.71E-03
78GO:0007035: vacuolar acidification3.71E-03
79GO:0009117: nucleotide metabolic process3.71E-03
80GO:0009228: thiamine biosynthetic process3.71E-03
81GO:0006563: L-serine metabolic process3.71E-03
82GO:0010304: PSII associated light-harvesting complex II catabolic process3.71E-03
83GO:0016070: RNA metabolic process3.71E-03
84GO:0070814: hydrogen sulfide biosynthetic process3.71E-03
85GO:0006120: mitochondrial electron transport, NADH to ubiquinone4.47E-03
86GO:0000054: ribosomal subunit export from nucleus4.47E-03
87GO:0048444: floral organ morphogenesis4.47E-03
88GO:0080036: regulation of cytokinin-activated signaling pathway4.47E-03
89GO:0010090: trichome morphogenesis4.85E-03
90GO:0000082: G1/S transition of mitotic cell cycle5.27E-03
91GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.27E-03
92GO:0007050: cell cycle arrest5.27E-03
93GO:0009787: regulation of abscisic acid-activated signaling pathway6.13E-03
94GO:0009704: de-etiolation6.13E-03
95GO:0000028: ribosomal small subunit assembly6.13E-03
96GO:0045010: actin nucleation6.13E-03
97GO:0009231: riboflavin biosynthetic process6.13E-03
98GO:0045292: mRNA cis splicing, via spliceosome6.13E-03
99GO:0019430: removal of superoxide radicals7.03E-03
100GO:0010100: negative regulation of photomorphogenesis7.03E-03
101GO:0006526: arginine biosynthetic process7.03E-03
102GO:0032544: plastid translation7.03E-03
103GO:0048589: developmental growth7.97E-03
104GO:0009056: catabolic process7.97E-03
105GO:0000902: cell morphogenesis7.97E-03
106GO:0015780: nucleotide-sugar transport7.97E-03
107GO:0098656: anion transmembrane transport7.97E-03
108GO:0010311: lateral root formation8.47E-03
109GO:0000160: phosphorelay signal transduction system8.47E-03
110GO:0035999: tetrahydrofolate interconversion8.96E-03
111GO:0010267: production of ta-siRNAs involved in RNA interference8.96E-03
112GO:1900865: chloroplast RNA modification8.96E-03
113GO:0006281: DNA repair9.73E-03
114GO:0009970: cellular response to sulfate starvation1.00E-02
115GO:0000103: sulfate assimilation1.00E-02
116GO:0009688: abscisic acid biosynthetic process1.00E-02
117GO:0009641: shade avoidance1.00E-02
118GO:0034599: cellular response to oxidative stress1.07E-02
119GO:0009682: induced systemic resistance1.11E-02
120GO:0052544: defense response by callose deposition in cell wall1.11E-02
121GO:0010015: root morphogenesis1.11E-02
122GO:0008152: metabolic process1.13E-02
123GO:0010152: pollen maturation1.22E-02
124GO:0006790: sulfur compound metabolic process1.22E-02
125GO:0010102: lateral root morphogenesis1.33E-02
126GO:0006006: glucose metabolic process1.33E-02
127GO:0050826: response to freezing1.33E-02
128GO:0006094: gluconeogenesis1.33E-02
129GO:0048440: carpel development1.45E-02
130GO:0002237: response to molecule of bacterial origin1.45E-02
131GO:0010020: chloroplast fission1.45E-02
132GO:0007015: actin filament organization1.45E-02
133GO:0009965: leaf morphogenesis1.49E-02
134GO:0007030: Golgi organization1.58E-02
135GO:0019853: L-ascorbic acid biosynthetic process1.58E-02
136GO:0010039: response to iron ion1.58E-02
137GO:0007031: peroxisome organization1.58E-02
138GO:0034976: response to endoplasmic reticulum stress1.70E-02
139GO:0009736: cytokinin-activated signaling pathway1.79E-02
140GO:0006486: protein glycosylation1.79E-02
141GO:0009585: red, far-red light phototransduction1.79E-02
142GO:0006406: mRNA export from nucleus1.83E-02
143GO:2000377: regulation of reactive oxygen species metabolic process1.83E-02
144GO:0006487: protein N-linked glycosylation1.83E-02
145GO:0009116: nucleoside metabolic process1.83E-02
146GO:0010224: response to UV-B1.85E-02
147GO:0008299: isoprenoid biosynthetic process1.96E-02
148GO:0016575: histone deacetylation1.96E-02
149GO:0019915: lipid storage2.10E-02
150GO:0015992: proton transport2.10E-02
151GO:0010431: seed maturation2.10E-02
152GO:2000022: regulation of jasmonic acid mediated signaling pathway2.24E-02
153GO:0006730: one-carbon metabolic process2.24E-02
154GO:0007005: mitochondrion organization2.24E-02
155GO:0009294: DNA mediated transformation2.38E-02
156GO:0016569: covalent chromatin modification2.40E-02
157GO:0048443: stamen development2.53E-02
158GO:0080022: primary root development2.83E-02
159GO:0010118: stomatal movement2.83E-02
160GO:0006606: protein import into nucleus2.83E-02
161GO:0000398: mRNA splicing, via spliceosome2.94E-02
162GO:0006662: glycerol ether metabolic process2.99E-02
163GO:0061025: membrane fusion3.15E-02
164GO:0009646: response to absence of light3.15E-02
165GO:0008654: phospholipid biosynthetic process3.31E-02
166GO:0032259: methylation3.40E-02
167GO:0002229: defense response to oomycetes3.47E-02
168GO:0010193: response to ozone3.47E-02
169GO:0009408: response to heat3.58E-02
170GO:0031047: gene silencing by RNA3.64E-02
171GO:0055114: oxidation-reduction process3.76E-02
172GO:1901657: glycosyl compound metabolic process3.81E-02
173GO:0016126: sterol biosynthetic process4.51E-02
174GO:0042128: nitrate assimilation4.87E-02
RankGO TermAdjusted P value
1GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity0.00E+00
2GO:0000033: alpha-1,3-mannosyltransferase activity0.00E+00
3GO:0008841: dihydrofolate synthase activity0.00E+00
4GO:0003826: alpha-ketoacid dehydrogenase activity0.00E+00
5GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
6GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity0.00E+00
7GO:0052671: geranylgeraniol kinase activity0.00E+00
8GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
9GO:0004151: dihydroorotase activity0.00E+00
10GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
11GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
12GO:0004147: dihydrolipoamide branched chain acyltransferase activity0.00E+00
13GO:0042030: ATPase inhibitor activity0.00E+00
14GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
15GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
16GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity0.00E+00
17GO:0052670: geraniol kinase activity0.00E+00
18GO:0052668: farnesol kinase activity0.00E+00
19GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
20GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
21GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
22GO:0004585: ornithine carbamoyltransferase activity0.00E+00
23GO:0016787: hydrolase activity5.41E-05
24GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity3.44E-04
25GO:0080047: GDP-L-galactose phosphorylase activity3.44E-04
26GO:0004793: threonine aldolase activity3.44E-04
27GO:0004452: isopentenyl-diphosphate delta-isomerase activity3.44E-04
28GO:0019707: protein-cysteine S-acyltransferase activity3.44E-04
29GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity3.44E-04
30GO:0008732: L-allo-threonine aldolase activity3.44E-04
31GO:0080048: GDP-D-glucose phosphorylase activity3.44E-04
32GO:0046480: galactolipid galactosyltransferase activity3.44E-04
33GO:0080079: cellobiose glucosidase activity3.44E-04
34GO:0033549: MAP kinase phosphatase activity3.44E-04
35GO:0004560: alpha-L-fucosidase activity3.44E-04
36GO:0004034: aldose 1-epimerase activity3.72E-04
37GO:0004061: arylformamidase activity7.51E-04
38GO:0000064: L-ornithine transmembrane transporter activity7.51E-04
39GO:0004826: phenylalanine-tRNA ligase activity7.51E-04
40GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity7.51E-04
41GO:0016743: carboxyl- or carbamoyltransferase activity7.51E-04
42GO:0017118: lipoyltransferase activity7.51E-04
43GO:0010331: gibberellin binding7.51E-04
44GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.51E-04
45GO:0016415: octanoyltransferase activity7.51E-04
46GO:0004766: spermidine synthase activity7.51E-04
47GO:0005047: signal recognition particle binding1.21E-03
48GO:0004848: ureidoglycolate hydrolase activity1.21E-03
49GO:0032403: protein complex binding1.21E-03
50GO:0008649: rRNA methyltransferase activity1.21E-03
51GO:0003935: GTP cyclohydrolase II activity1.21E-03
52GO:0004781: sulfate adenylyltransferase (ATP) activity1.21E-03
53GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity1.21E-03
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.21E-03
55GO:0000254: C-4 methylsterol oxidase activity1.75E-03
56GO:0035529: NADH pyrophosphatase activity1.75E-03
57GO:0016656: monodehydroascorbate reductase (NADH) activity1.75E-03
58GO:0000339: RNA cap binding1.75E-03
59GO:0047627: adenylylsulfatase activity1.75E-03
60GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.75E-03
61GO:0017077: oxidative phosphorylation uncoupler activity1.75E-03
62GO:0004749: ribose phosphate diphosphokinase activity1.75E-03
63GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.35E-03
64GO:0004576: oligosaccharyl transferase activity2.35E-03
65GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.35E-03
66GO:0005319: lipid transporter activity2.35E-03
67GO:0010011: auxin binding2.35E-03
68GO:0016407: acetyltransferase activity3.00E-03
69GO:0004372: glycine hydroxymethyltransferase activity3.00E-03
70GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.00E-03
71GO:0005496: steroid binding3.00E-03
72GO:0004356: glutamate-ammonia ligase activity3.00E-03
73GO:0008080: N-acetyltransferase activity3.45E-03
74GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity3.71E-03
75GO:0051117: ATPase binding3.71E-03
76GO:0004784: superoxide dismutase activity3.71E-03
77GO:0080046: quercetin 4'-O-glucosyltransferase activity3.71E-03
78GO:0004605: phosphatidate cytidylyltransferase activity3.71E-03
79GO:0070300: phosphatidic acid binding4.47E-03
80GO:0009927: histidine phosphotransfer kinase activity4.47E-03
81GO:0004427: inorganic diphosphatase activity5.27E-03
82GO:0016621: cinnamoyl-CoA reductase activity5.27E-03
83GO:0008143: poly(A) binding5.27E-03
84GO:0005085: guanyl-nucleotide exchange factor activity5.27E-03
85GO:0005338: nucleotide-sugar transmembrane transporter activity5.27E-03
86GO:0004386: helicase activity5.36E-03
87GO:0016597: amino acid binding5.82E-03
88GO:0035064: methylated histone binding6.13E-03
89GO:0015078: hydrogen ion transmembrane transporter activity7.03E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.03E-03
91GO:0071949: FAD binding7.97E-03
92GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.97E-03
93GO:0047617: acyl-CoA hydrolase activity8.96E-03
94GO:0003824: catalytic activity9.33E-03
95GO:0008047: enzyme activator activity1.00E-02
96GO:0046961: proton-transporting ATPase activity, rotational mechanism1.11E-02
97GO:0000049: tRNA binding1.22E-02
98GO:0008378: galactosyltransferase activity1.22E-02
99GO:0015266: protein channel activity1.33E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity1.33E-02
101GO:0004089: carbonate dehydratase activity1.33E-02
102GO:0031072: heat shock protein binding1.33E-02
103GO:0043621: protein self-association1.43E-02
104GO:0008168: methyltransferase activity1.60E-02
105GO:0004725: protein tyrosine phosphatase activity1.70E-02
106GO:0005528: FK506 binding1.83E-02
107GO:0004407: histone deacetylase activity1.83E-02
108GO:0043130: ubiquitin binding1.83E-02
109GO:0043424: protein histidine kinase binding1.96E-02
110GO:0004176: ATP-dependent peptidase activity2.10E-02
111GO:0000166: nucleotide binding2.30E-02
112GO:0022857: transmembrane transporter activity2.40E-02
113GO:0003756: protein disulfide isomerase activity2.53E-02
114GO:0008514: organic anion transmembrane transporter activity2.53E-02
115GO:0047134: protein-disulfide reductase activity2.68E-02
116GO:0005102: receptor binding2.68E-02
117GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.99E-02
118GO:0050662: coenzyme binding3.15E-02
119GO:0004791: thioredoxin-disulfide reductase activity3.15E-02
120GO:0016853: isomerase activity3.15E-02
121GO:0008137: NADH dehydrogenase (ubiquinone) activity3.47E-02
122GO:0048038: quinone binding3.47E-02
123GO:0016491: oxidoreductase activity3.65E-02
124GO:0000156: phosphorelay response regulator activity3.81E-02
125GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.81E-02
126GO:0051015: actin filament binding3.81E-02
127GO:0015144: carbohydrate transmembrane transporter activity3.81E-02
128GO:0005515: protein binding4.05E-02
129GO:0008237: metallopeptidase activity4.15E-02
130GO:0003723: RNA binding4.29E-02
131GO:0005351: sugar:proton symporter activity4.29E-02
132GO:0016168: chlorophyll binding4.69E-02
133GO:0008375: acetylglucosaminyltransferase activity4.87E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
3GO:0009507: chloroplast1.39E-06
4GO:0005747: mitochondrial respiratory chain complex I9.82E-05
5GO:0043190: ATP-binding cassette (ABC) transporter complex3.44E-04
6GO:0000152: nuclear ubiquitin ligase complex3.44E-04
7GO:1990429: peroxisomal importomer complex3.44E-04
8GO:0005845: mRNA cap binding complex3.44E-04
9GO:0005829: cytosol3.65E-04
10GO:0009536: plastid4.10E-04
11GO:0005846: nuclear cap binding complex7.51E-04
12GO:0009941: chloroplast envelope8.93E-04
13GO:0005737: cytoplasm1.65E-03
14GO:0042646: plastid nucleoid1.75E-03
15GO:0009517: PSII associated light-harvesting complex II2.35E-03
16GO:0000445: THO complex part of transcription export complex2.35E-03
17GO:0033179: proton-transporting V-type ATPase, V0 domain2.35E-03
18GO:0016471: vacuolar proton-transporting V-type ATPase complex2.35E-03
19GO:0008250: oligosaccharyltransferase complex3.00E-03
20GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.00E-03
21GO:0031209: SCAR complex3.71E-03
22GO:0032588: trans-Golgi network membrane3.71E-03
23GO:0005885: Arp2/3 protein complex4.47E-03
24GO:0000347: THO complex5.27E-03
25GO:0031359: integral component of chloroplast outer membrane5.27E-03
26GO:0009295: nucleoid5.49E-03
27GO:0005778: peroxisomal membrane5.49E-03
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.97E-03
29GO:0042644: chloroplast nucleoid7.97E-03
30GO:0005763: mitochondrial small ribosomal subunit7.97E-03
31GO:0009707: chloroplast outer membrane8.05E-03
32GO:0005759: mitochondrial matrix8.55E-03
33GO:0016604: nuclear body8.96E-03
34GO:0009508: plastid chromosome1.33E-02
35GO:0009535: chloroplast thylakoid membrane1.43E-02
36GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.89E-02
37GO:0045271: respiratory chain complex I1.96E-02
38GO:0016607: nuclear speck2.18E-02
39GO:0031969: chloroplast membrane2.21E-02
40GO:0005744: mitochondrial inner membrane presequence translocase complex2.53E-02
41GO:0009706: chloroplast inner membrane2.55E-02
42GO:0005777: peroxisome2.82E-02
43GO:0009570: chloroplast stroma2.87E-02
44GO:0005743: mitochondrial inner membrane3.28E-02
45GO:0009523: photosystem II3.31E-02
46GO:0071944: cell periphery3.81E-02
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Gene type



Gene DE type