Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0017009: protein-phycocyanobilin linkage0.00E+00
4GO:0015882: L-ascorbic acid transport0.00E+00
5GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
11GO:1901918: negative regulation of exoribonuclease activity0.00E+00
12GO:0090391: granum assembly3.35E-08
13GO:0018298: protein-chromophore linkage2.68E-07
14GO:0015979: photosynthesis4.47E-07
15GO:0010189: vitamin E biosynthetic process3.58E-06
16GO:0015994: chlorophyll metabolic process6.26E-05
17GO:0006021: inositol biosynthetic process6.26E-05
18GO:0009768: photosynthesis, light harvesting in photosystem I1.38E-04
19GO:0046855: inositol phosphate dephosphorylation1.43E-04
20GO:0009637: response to blue light1.60E-04
21GO:0010114: response to red light2.48E-04
22GO:0010196: nonphotochemical quenching2.54E-04
23GO:0009644: response to high light intensity2.82E-04
24GO:0010362: negative regulation of anion channel activity by blue light3.11E-04
25GO:0031426: polycistronic mRNA processing3.11E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.11E-04
27GO:0033388: putrescine biosynthetic process from arginine3.11E-04
28GO:0000481: maturation of 5S rRNA3.11E-04
29GO:1904964: positive regulation of phytol biosynthetic process3.11E-04
30GO:0071277: cellular response to calcium ion3.11E-04
31GO:0042371: vitamin K biosynthetic process3.11E-04
32GO:0043686: co-translational protein modification3.11E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation3.11E-04
34GO:1902458: positive regulation of stomatal opening3.11E-04
35GO:0010028: xanthophyll cycle3.11E-04
36GO:0034337: RNA folding3.11E-04
37GO:0006419: alanyl-tRNA aminoacylation3.11E-04
38GO:0009642: response to light intensity3.21E-04
39GO:0048564: photosystem I assembly3.21E-04
40GO:0009791: post-embryonic development3.83E-04
41GO:0009657: plastid organization3.94E-04
42GO:0009793: embryo development ending in seed dormancy5.06E-04
43GO:0009658: chloroplast organization6.66E-04
44GO:0010027: thylakoid membrane organization6.71E-04
45GO:0009629: response to gravity6.81E-04
46GO:0080005: photosystem stoichiometry adjustment6.81E-04
47GO:0046741: transport of virus in host, tissue to tissue6.81E-04
48GO:0042853: L-alanine catabolic process6.81E-04
49GO:0009915: phloem sucrose loading6.81E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process6.81E-04
51GO:0030187: melatonin biosynthetic process6.81E-04
52GO:0000256: allantoin catabolic process6.81E-04
53GO:0034755: iron ion transmembrane transport6.81E-04
54GO:0006435: threonyl-tRNA aminoacylation6.81E-04
55GO:0009446: putrescine biosynthetic process6.81E-04
56GO:0016122: xanthophyll metabolic process6.81E-04
57GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
58GO:1903426: regulation of reactive oxygen species biosynthetic process6.81E-04
59GO:0006568: tryptophan metabolic process6.81E-04
60GO:0030388: fructose 1,6-bisphosphate metabolic process6.81E-04
61GO:0010275: NAD(P)H dehydrogenase complex assembly6.81E-04
62GO:0009773: photosynthetic electron transport in photosystem I7.52E-04
63GO:0015995: chlorophyll biosynthetic process8.25E-04
64GO:0006790: sulfur compound metabolic process8.60E-04
65GO:0010207: photosystem II assembly1.09E-03
66GO:0010020: chloroplast fission1.09E-03
67GO:0019253: reductive pentose-phosphate cycle1.09E-03
68GO:0010136: ureide catabolic process1.10E-03
69GO:0006000: fructose metabolic process1.10E-03
70GO:0009405: pathogenesis1.10E-03
71GO:0046854: phosphatidylinositol phosphorylation1.22E-03
72GO:0090307: mitotic spindle assembly1.58E-03
73GO:0046739: transport of virus in multicellular host1.58E-03
74GO:0006145: purine nucleobase catabolic process1.58E-03
75GO:0051016: barbed-end actin filament capping1.58E-03
76GO:0042989: sequestering of actin monomers1.58E-03
77GO:0042823: pyridoxal phosphate biosynthetic process1.58E-03
78GO:0043572: plastid fission1.58E-03
79GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.58E-03
80GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.58E-03
81GO:2001141: regulation of RNA biosynthetic process1.58E-03
82GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.58E-03
83GO:0006020: inositol metabolic process1.58E-03
84GO:0071484: cellular response to light intensity1.58E-03
85GO:0010239: chloroplast mRNA processing1.58E-03
86GO:0009052: pentose-phosphate shunt, non-oxidative branch1.58E-03
87GO:0031122: cytoplasmic microtubule organization2.12E-03
88GO:0009902: chloroplast relocation2.12E-03
89GO:0009306: protein secretion2.36E-03
90GO:0016558: protein import into peroxisome matrix2.71E-03
91GO:0030041: actin filament polymerization2.71E-03
92GO:0010117: photoprotection2.71E-03
93GO:0010236: plastoquinone biosynthetic process2.71E-03
94GO:0045038: protein import into chloroplast thylakoid membrane2.71E-03
95GO:0031365: N-terminal protein amino acid modification2.71E-03
96GO:0009117: nucleotide metabolic process3.35E-03
97GO:0009643: photosynthetic acclimation3.35E-03
98GO:0042549: photosystem II stabilization3.35E-03
99GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.35E-03
100GO:0048280: vesicle fusion with Golgi apparatus4.03E-03
101GO:1901259: chloroplast rRNA processing4.03E-03
102GO:0071470: cellular response to osmotic stress4.03E-03
103GO:0080167: response to karrikin4.29E-03
104GO:0009735: response to cytokinin4.50E-03
105GO:0009645: response to low light intensity stimulus4.76E-03
106GO:0006400: tRNA modification4.76E-03
107GO:0051510: regulation of unidimensional cell growth4.76E-03
108GO:0009704: de-etiolation5.53E-03
109GO:0032508: DNA duplex unwinding5.53E-03
110GO:2000070: regulation of response to water deprivation5.53E-03
111GO:0031540: regulation of anthocyanin biosynthetic process5.53E-03
112GO:0009231: riboflavin biosynthetic process5.53E-03
113GO:0016559: peroxisome fission5.53E-03
114GO:0006979: response to oxidative stress5.89E-03
115GO:0032544: plastid translation6.33E-03
116GO:0017004: cytochrome complex assembly6.33E-03
117GO:0006002: fructose 6-phosphate metabolic process6.33E-03
118GO:0071482: cellular response to light stimulus6.33E-03
119GO:0016311: dephosphorylation6.59E-03
120GO:0010206: photosystem II repair7.19E-03
121GO:0090333: regulation of stomatal closure7.19E-03
122GO:0048507: meristem development7.19E-03
123GO:0006754: ATP biosynthetic process7.19E-03
124GO:0000373: Group II intron splicing7.19E-03
125GO:0098656: anion transmembrane transport7.19E-03
126GO:0009821: alkaloid biosynthetic process7.19E-03
127GO:0010218: response to far red light7.65E-03
128GO:0007623: circadian rhythm7.97E-03
129GO:0007568: aging8.02E-03
130GO:0009098: leucine biosynthetic process8.07E-03
131GO:0009638: phototropism8.07E-03
132GO:0006457: protein folding8.25E-03
133GO:0009853: photorespiration8.80E-03
134GO:0006896: Golgi to vacuole transport9.00E-03
135GO:0045036: protein targeting to chloroplast9.00E-03
136GO:0006259: DNA metabolic process9.00E-03
137GO:0034599: cellular response to oxidative stress9.20E-03
138GO:0006265: DNA topological change9.96E-03
139GO:0072593: reactive oxygen species metabolic process9.96E-03
140GO:0043085: positive regulation of catalytic activity9.96E-03
141GO:0006879: cellular iron ion homeostasis9.96E-03
142GO:0006352: DNA-templated transcription, initiation9.96E-03
143GO:0006415: translational termination9.96E-03
144GO:0006006: glucose metabolic process1.20E-02
145GO:0006807: nitrogen compound metabolic process1.20E-02
146GO:0009725: response to hormone1.20E-02
147GO:0006094: gluconeogenesis1.20E-02
148GO:0009767: photosynthetic electron transport chain1.20E-02
149GO:0005986: sucrose biosynthetic process1.20E-02
150GO:0006810: transport1.23E-02
151GO:0055114: oxidation-reduction process1.25E-02
152GO:0009266: response to temperature stimulus1.31E-02
153GO:0046686: response to cadmium ion1.37E-02
154GO:0019853: L-ascorbic acid biosynthetic process1.42E-02
155GO:0090351: seedling development1.42E-02
156GO:0006863: purine nucleobase transport1.53E-02
157GO:0006833: water transport1.53E-02
158GO:0010224: response to UV-B1.59E-02
159GO:0080147: root hair cell development1.65E-02
160GO:0009863: salicylic acid mediated signaling pathway1.65E-02
161GO:0007010: cytoskeleton organization1.65E-02
162GO:0006418: tRNA aminoacylation for protein translation1.77E-02
163GO:0007017: microtubule-based process1.77E-02
164GO:0051302: regulation of cell division1.77E-02
165GO:0019953: sexual reproduction1.77E-02
166GO:0008299: isoprenoid biosynthetic process1.77E-02
167GO:0019915: lipid storage1.89E-02
168GO:0019748: secondary metabolic process2.01E-02
169GO:0006396: RNA processing2.26E-02
170GO:0009561: megagametogenesis2.27E-02
171GO:0042147: retrograde transport, endosome to Golgi2.41E-02
172GO:0034220: ion transmembrane transport2.55E-02
173GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
174GO:0010118: stomatal movement2.55E-02
175GO:0006606: protein import into nucleus2.55E-02
176GO:0055085: transmembrane transport2.63E-02
177GO:0006662: glycerol ether metabolic process2.68E-02
178GO:0048868: pollen tube development2.68E-02
179GO:0007059: chromosome segregation2.83E-02
180GO:0009058: biosynthetic process2.89E-02
181GO:0006623: protein targeting to vacuole2.97E-02
182GO:0009845: seed germination2.97E-02
183GO:0019252: starch biosynthetic process2.97E-02
184GO:0008654: phospholipid biosynthetic process2.97E-02
185GO:0055072: iron ion homeostasis2.97E-02
186GO:0009409: response to cold2.98E-02
187GO:0000302: response to reactive oxygen species3.12E-02
188GO:0006891: intra-Golgi vesicle-mediated transport3.12E-02
189GO:0006635: fatty acid beta-oxidation3.12E-02
190GO:0010193: response to ozone3.12E-02
191GO:0016032: viral process3.27E-02
192GO:0019761: glucosinolate biosynthetic process3.27E-02
193GO:0006413: translational initiation3.53E-02
194GO:0009816: defense response to bacterium, incompatible interaction4.22E-02
195GO:0042128: nitrate assimilation4.38E-02
196GO:0010468: regulation of gene expression4.50E-02
197GO:0006888: ER to Golgi vesicle-mediated transport4.55E-02
198GO:0048481: plant ovule development4.89E-02
199GO:0009817: defense response to fungus, incompatible interaction4.89E-02
RankGO TermAdjusted P value
1GO:0016210: naringenin-chalcone synthase activity0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0010276: phytol kinase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0015229: L-ascorbic acid transporter activity0.00E+00
7GO:0009976: tocopherol cyclase activity0.00E+00
8GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0042623: ATPase activity, coupled0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
13GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
14GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
17GO:0050281: serine-glyoxylate transaminase activity0.00E+00
18GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
19GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
20GO:0043136: glycerol-3-phosphatase activity0.00E+00
21GO:0000121: glycerol-1-phosphatase activity0.00E+00
22GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
23GO:0016168: chlorophyll binding3.85E-06
24GO:0008934: inositol monophosphate 1-phosphatase activity4.41E-06
25GO:0052833: inositol monophosphate 4-phosphatase activity4.41E-06
26GO:0052832: inositol monophosphate 3-phosphatase activity4.41E-06
27GO:0008453: alanine-glyoxylate transaminase activity6.26E-05
28GO:0031409: pigment binding1.02E-04
29GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.95E-04
30GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.11E-04
31GO:0004813: alanine-tRNA ligase activity3.11E-04
32GO:0042586: peptide deformylase activity3.11E-04
33GO:0004830: tryptophan-tRNA ligase activity3.11E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
35GO:0030941: chloroplast targeting sequence binding3.11E-04
36GO:0010347: L-galactose-1-phosphate phosphatase activity3.11E-04
37GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.11E-04
38GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.11E-04
39GO:0035671: enone reductase activity3.11E-04
40GO:0004425: indole-3-glycerol-phosphate synthase activity3.11E-04
41GO:0004451: isocitrate lyase activity3.11E-04
42GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.19E-04
43GO:0016853: isomerase activity3.49E-04
44GO:0004829: threonine-tRNA ligase activity6.81E-04
45GO:0019172: glyoxalase III activity6.81E-04
46GO:0003862: 3-isopropylmalate dehydrogenase activity6.81E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
48GO:0047746: chlorophyllase activity6.81E-04
49GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
50GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.81E-04
51GO:0031072: heat shock protein binding9.73E-04
52GO:0004148: dihydrolipoyl dehydrogenase activity1.10E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.10E-03
54GO:0030267: glyoxylate reductase (NADP) activity1.10E-03
55GO:0070402: NADPH binding1.10E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
57GO:0005528: FK506 binding1.50E-03
58GO:0048027: mRNA 5'-UTR binding1.58E-03
59GO:0004792: thiosulfate sulfurtransferase activity1.58E-03
60GO:0016149: translation release factor activity, codon specific1.58E-03
61GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.58E-03
62GO:0016851: magnesium chelatase activity1.58E-03
63GO:0009882: blue light photoreceptor activity1.58E-03
64GO:0035529: NADH pyrophosphatase activity1.58E-03
65GO:0046872: metal ion binding1.79E-03
66GO:0051537: 2 iron, 2 sulfur cluster binding1.91E-03
67GO:0016987: sigma factor activity2.12E-03
68GO:0043015: gamma-tubulin binding2.12E-03
69GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.12E-03
70GO:0043495: protein anchor2.12E-03
71GO:0001053: plastid sigma factor activity2.12E-03
72GO:0051861: glycolipid binding2.12E-03
73GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.12E-03
74GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.12E-03
75GO:0022891: substrate-specific transmembrane transporter activity2.17E-03
76GO:0051287: NAD binding2.21E-03
77GO:0003785: actin monomer binding2.71E-03
78GO:0051011: microtubule minus-end binding2.71E-03
79GO:0008080: N-acetyltransferase activity2.98E-03
80GO:0016491: oxidoreductase activity3.31E-03
81GO:0004462: lactoylglutathione lyase activity3.35E-03
82GO:0016462: pyrophosphatase activity3.35E-03
83GO:0000293: ferric-chelate reductase activity3.35E-03
84GO:0042578: phosphoric ester hydrolase activity3.35E-03
85GO:0004605: phosphatidate cytidylyltransferase activity3.35E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.03E-03
87GO:0015631: tubulin binding4.03E-03
88GO:0008195: phosphatidate phosphatase activity4.03E-03
89GO:0019899: enzyme binding4.76E-03
90GO:0019843: rRNA binding5.28E-03
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity6.33E-03
92GO:0008135: translation factor activity, RNA binding6.33E-03
93GO:0008565: protein transporter activity6.64E-03
94GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.19E-03
95GO:0003747: translation release factor activity7.19E-03
96GO:0005381: iron ion transmembrane transporter activity8.07E-03
97GO:0016844: strictosidine synthase activity8.07E-03
98GO:0009055: electron carrier activity8.63E-03
99GO:0003746: translation elongation factor activity8.80E-03
100GO:0008047: enzyme activator activity9.00E-03
101GO:0003993: acid phosphatase activity9.20E-03
102GO:0005089: Rho guanyl-nucleotide exchange factor activity9.96E-03
103GO:0042802: identical protein binding1.08E-02
104GO:0000049: tRNA binding1.10E-02
105GO:0005315: inorganic phosphate transmembrane transporter activity1.20E-02
106GO:0000155: phosphorelay sensor kinase activity1.20E-02
107GO:0005198: structural molecule activity1.28E-02
108GO:0005345: purine nucleobase transmembrane transporter activity1.77E-02
109GO:0043424: protein histidine kinase binding1.77E-02
110GO:0004176: ATP-dependent peptidase activity1.89E-02
111GO:0003779: actin binding2.13E-02
112GO:0051082: unfolded protein binding2.19E-02
113GO:0003727: single-stranded RNA binding2.27E-02
114GO:0008514: organic anion transmembrane transporter activity2.27E-02
115GO:0047134: protein-disulfide reductase activity2.41E-02
116GO:0004812: aminoacyl-tRNA ligase activity2.41E-02
117GO:0010181: FMN binding2.83E-02
118GO:0004791: thioredoxin-disulfide reductase activity2.83E-02
119GO:0004872: receptor activity2.97E-02
120GO:0003924: GTPase activity2.98E-02
121GO:0048038: quinone binding3.12E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.42E-02
123GO:0005200: structural constituent of cytoskeleton3.73E-02
124GO:0016597: amino acid binding3.89E-02
125GO:0015250: water channel activity4.05E-02
126GO:0003743: translation initiation factor activity4.41E-02
127GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.72E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009349: riboflavin synthase complex0.00E+00
3GO:0009507: chloroplast1.23E-66
4GO:0009535: chloroplast thylakoid membrane1.38E-39
5GO:0009534: chloroplast thylakoid1.15E-26
6GO:0009941: chloroplast envelope8.27E-24
7GO:0009570: chloroplast stroma1.31E-22
8GO:0009579: thylakoid4.82E-16
9GO:0009543: chloroplast thylakoid lumen1.80E-13
10GO:0031977: thylakoid lumen3.90E-08
11GO:0010287: plastoglobule1.02E-06
12GO:0033281: TAT protein transport complex1.57E-05
13GO:0009523: photosystem II2.70E-05
14GO:0009654: photosystem II oxygen evolving complex1.38E-04
15GO:0009782: photosystem I antenna complex3.11E-04
16GO:0042644: chloroplast nucleoid4.73E-04
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.73E-04
18GO:0008274: gamma-tubulin ring complex6.81E-04
19GO:0008290: F-actin capping protein complex6.81E-04
20GO:0009706: chloroplast inner membrane6.95E-04
21GO:0009707: chloroplast outer membrane9.37E-04
22GO:0030095: chloroplast photosystem II1.09E-03
23GO:0010007: magnesium chelatase complex1.10E-03
24GO:0030076: light-harvesting complex1.22E-03
25GO:0000923: equatorial microtubule organizing center1.58E-03
26GO:0042646: plastid nucleoid1.58E-03
27GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.12E-03
28GO:0030286: dynein complex2.12E-03
29GO:0009522: photosystem I3.20E-03
30GO:0019898: extrinsic component of membrane3.43E-03
31GO:0009295: nucleoid4.73E-03
32GO:0005778: peroxisomal membrane4.73E-03
33GO:0031359: integral component of chloroplast outer membrane4.76E-03
34GO:0009533: chloroplast stromal thylakoid4.76E-03
35GO:0009538: photosystem I reaction center5.53E-03
36GO:0012507: ER to Golgi transport vesicle membrane5.53E-03
37GO:0009539: photosystem II reaction center6.33E-03
38GO:0000922: spindle pole7.19E-03
39GO:0012511: monolayer-surrounded lipid storage body9.96E-03
40GO:0032040: small-subunit processome1.10E-02
41GO:0009508: plastid chromosome1.20E-02
42GO:0005938: cell cortex1.20E-02
43GO:0042651: thylakoid membrane1.77E-02
44GO:0031969: chloroplast membrane1.83E-02
45GO:0015629: actin cytoskeleton2.14E-02
46GO:0005777: peroxisome2.26E-02
47GO:0016020: membrane2.68E-02
48GO:0005759: mitochondrial matrix3.45E-02
49GO:0010319: stromule3.73E-02
<
Gene type



Gene DE type