Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006069: ethanol oxidation0.00E+00
2GO:2000786: positive regulation of autophagosome assembly0.00E+00
3GO:0046085: adenosine metabolic process0.00E+00
4GO:0090549: response to carbon starvation0.00E+00
5GO:0006721: terpenoid metabolic process0.00E+00
6GO:0001881: receptor recycling0.00E+00
7GO:0006592: ornithine biosynthetic process0.00E+00
8GO:0048870: cell motility0.00E+00
9GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
10GO:0051776: detection of redox state0.00E+00
11GO:0046292: formaldehyde metabolic process0.00E+00
12GO:0043482: cellular pigment accumulation0.00E+00
13GO:0007530: sex determination0.00E+00
14GO:0006511: ubiquitin-dependent protein catabolic process1.28E-06
15GO:0006914: autophagy5.54E-05
16GO:0043248: proteasome assembly1.60E-04
17GO:0009853: photorespiration1.92E-04
18GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.18E-04
19GO:0019509: L-methionine salvage from methylthioadenosine2.18E-04
20GO:0010265: SCF complex assembly3.34E-04
21GO:2001006: regulation of cellulose biosynthetic process3.34E-04
22GO:0016487: farnesol metabolic process3.34E-04
23GO:2000025: regulation of leaf formation3.34E-04
24GO:1990022: RNA polymerase III complex localization to nucleus3.34E-04
25GO:0044376: RNA polymerase II complex import to nucleus3.34E-04
26GO:0031468: nuclear envelope reassembly3.34E-04
27GO:0045454: cell redox homeostasis3.69E-04
28GO:0051252: regulation of RNA metabolic process7.29E-04
29GO:0045905: positive regulation of translational termination7.29E-04
30GO:0071668: plant-type cell wall assembly7.29E-04
31GO:0045901: positive regulation of translational elongation7.29E-04
32GO:0006452: translational frameshifting7.29E-04
33GO:0043255: regulation of carbohydrate biosynthetic process7.29E-04
34GO:0007163: establishment or maintenance of cell polarity7.29E-04
35GO:0030010: establishment of cell polarity7.29E-04
36GO:0051788: response to misfolded protein7.29E-04
37GO:0006432: phenylalanyl-tRNA aminoacylation7.29E-04
38GO:0016569: covalent chromatin modification7.43E-04
39GO:0006888: ER to Golgi vesicle-mediated transport9.38E-04
40GO:0016925: protein sumoylation9.49E-04
41GO:0046417: chorismate metabolic process1.18E-03
42GO:0015940: pantothenate biosynthetic process1.18E-03
43GO:0045793: positive regulation of cell size1.18E-03
44GO:0006760: folic acid-containing compound metabolic process1.18E-03
45GO:0090708: specification of plant organ axis polarity1.18E-03
46GO:0008333: endosome to lysosome transport1.18E-03
47GO:0006406: mRNA export from nucleus1.66E-03
48GO:0006487: protein N-linked glycosylation1.66E-03
49GO:0006516: glycoprotein catabolic process1.70E-03
50GO:0006168: adenine salvage1.70E-03
51GO:0006882: cellular zinc ion homeostasis1.70E-03
52GO:0032877: positive regulation of DNA endoreduplication1.70E-03
53GO:0006166: purine ribonucleoside salvage1.70E-03
54GO:0006107: oxaloacetate metabolic process1.70E-03
55GO:0009647: skotomorphogenesis1.70E-03
56GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.70E-03
57GO:0035067: negative regulation of histone acetylation1.70E-03
58GO:1901332: negative regulation of lateral root development1.70E-03
59GO:0046686: response to cadmium ion2.05E-03
60GO:0016226: iron-sulfur cluster assembly2.21E-03
61GO:0006749: glutathione metabolic process2.28E-03
62GO:0009755: hormone-mediated signaling pathway2.28E-03
63GO:0010109: regulation of photosynthesis2.28E-03
64GO:0015976: carbon utilization2.28E-03
65GO:0051781: positive regulation of cell division2.28E-03
66GO:0002098: tRNA wobble uridine modification2.28E-03
67GO:0031507: heterochromatin assembly2.28E-03
68GO:0044209: AMP salvage2.91E-03
69GO:0018344: protein geranylgeranylation2.91E-03
70GO:0030041: actin filament polymerization2.91E-03
71GO:0051603: proteolysis involved in cellular protein catabolic process3.02E-03
72GO:0015991: ATP hydrolysis coupled proton transport3.06E-03
73GO:0006662: glycerol ether metabolic process3.30E-03
74GO:0009826: unidimensional cell growth3.42E-03
75GO:0006014: D-ribose metabolic process3.60E-03
76GO:0006777: Mo-molybdopterin cofactor biosynthetic process3.60E-03
77GO:0006555: methionine metabolic process3.60E-03
78GO:0034314: Arp2/3 complex-mediated actin nucleation3.60E-03
79GO:0048825: cotyledon development3.81E-03
80GO:0009554: megasporogenesis4.33E-03
81GO:0009612: response to mechanical stimulus4.33E-03
82GO:0010090: trichome morphogenesis4.64E-03
83GO:0048528: post-embryonic root development5.11E-03
84GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.11E-03
85GO:0010286: heat acclimation5.25E-03
86GO:0000398: mRNA splicing, via spliceosome5.44E-03
87GO:0006506: GPI anchor biosynthetic process5.94E-03
88GO:0000028: ribosomal small subunit assembly5.94E-03
89GO:0045010: actin nucleation5.94E-03
90GO:0031540: regulation of anthocyanin biosynthetic process5.94E-03
91GO:0010928: regulation of auxin mediated signaling pathway5.94E-03
92GO:0035265: organ growth5.94E-03
93GO:0009690: cytokinin metabolic process5.94E-03
94GO:0006526: arginine biosynthetic process6.81E-03
95GO:0010204: defense response signaling pathway, resistance gene-independent6.81E-03
96GO:0009808: lignin metabolic process6.81E-03
97GO:0010099: regulation of photomorphogenesis6.81E-03
98GO:0022900: electron transport chain6.81E-03
99GO:0009880: embryonic pattern specification6.81E-03
100GO:0006754: ATP biosynthetic process7.73E-03
101GO:0048589: developmental growth7.73E-03
102GO:0000902: cell morphogenesis7.73E-03
103GO:0046685: response to arsenic-containing substance7.73E-03
104GO:0071577: zinc II ion transmembrane transport8.68E-03
105GO:0010267: production of ta-siRNAs involved in RNA interference8.68E-03
106GO:0042761: very long-chain fatty acid biosynthetic process8.68E-03
107GO:0010449: root meristem growth8.68E-03
108GO:0010043: response to zinc ion8.91E-03
109GO:0043069: negative regulation of programmed cell death9.69E-03
110GO:0006325: chromatin organization9.69E-03
111GO:0009870: defense response signaling pathway, resistance gene-dependent9.69E-03
112GO:0006995: cellular response to nitrogen starvation9.69E-03
113GO:0048364: root development9.69E-03
114GO:0000103: sulfate assimilation9.69E-03
115GO:0055114: oxidation-reduction process9.72E-03
116GO:0034599: cellular response to oxidative stress1.02E-02
117GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.05E-02
118GO:0048229: gametophyte development1.07E-02
119GO:0016485: protein processing1.07E-02
120GO:0010015: root morphogenesis1.07E-02
121GO:0009073: aromatic amino acid family biosynthetic process1.07E-02
122GO:0015031: protein transport1.14E-02
123GO:0009926: auxin polar transport1.26E-02
124GO:0008283: cell proliferation1.26E-02
125GO:0006108: malate metabolic process1.29E-02
126GO:0006807: nitrogen compound metabolic process1.29E-02
127GO:0009691: cytokinin biosynthetic process1.29E-02
128GO:2000028: regulation of photoperiodism, flowering1.29E-02
129GO:0010628: positive regulation of gene expression1.29E-02
130GO:0007015: actin filament organization1.41E-02
131GO:0007034: vacuolar transport1.41E-02
132GO:0002237: response to molecule of bacterial origin1.41E-02
133GO:0071732: cellular response to nitric oxide1.53E-02
134GO:0009734: auxin-activated signaling pathway1.53E-02
135GO:0007030: Golgi organization1.53E-02
136GO:0010039: response to iron ion1.53E-02
137GO:0006071: glycerol metabolic process1.65E-02
138GO:0042753: positive regulation of circadian rhythm1.65E-02
139GO:0034976: response to endoplasmic reticulum stress1.65E-02
140GO:0009736: cytokinin-activated signaling pathway1.71E-02
141GO:2000377: regulation of reactive oxygen species metabolic process1.77E-02
142GO:0009116: nucleoside metabolic process1.77E-02
143GO:0051302: regulation of cell division1.90E-02
144GO:0015992: proton transport2.03E-02
145GO:0051260: protein homooligomerization2.03E-02
146GO:0010431: seed maturation2.03E-02
147GO:0061077: chaperone-mediated protein folding2.03E-02
148GO:0019748: secondary metabolic process2.17E-02
149GO:0016192: vesicle-mediated transport2.22E-02
150GO:0071369: cellular response to ethylene stimulus2.31E-02
151GO:0006012: galactose metabolic process2.31E-02
152GO:0009294: DNA mediated transformation2.31E-02
153GO:0009306: protein secretion2.45E-02
154GO:0010089: xylem development2.45E-02
155GO:0019722: calcium-mediated signaling2.45E-02
156GO:0042147: retrograde transport, endosome to Golgi2.60E-02
157GO:0009733: response to auxin2.60E-02
158GO:0000413: protein peptidyl-prolyl isomerization2.74E-02
159GO:0010051: xylem and phloem pattern formation2.74E-02
160GO:0010182: sugar mediated signaling pathway2.89E-02
161GO:0006342: chromatin silencing2.89E-02
162GO:0010154: fruit development2.89E-02
163GO:0015986: ATP synthesis coupled proton transport3.05E-02
164GO:0061025: membrane fusion3.05E-02
165GO:0009556: microsporogenesis3.20E-02
166GO:0006623: protein targeting to vacuole3.20E-02
167GO:0009791: post-embryonic development3.20E-02
168GO:0010183: pollen tube guidance3.20E-02
169GO:0009749: response to glucose3.20E-02
170GO:0080156: mitochondrial mRNA modification3.36E-02
171GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.36E-02
172GO:0031047: gene silencing by RNA3.52E-02
173GO:0009790: embryo development3.55E-02
174GO:0030163: protein catabolic process3.69E-02
175GO:0071281: cellular response to iron ion3.69E-02
176GO:0006904: vesicle docking involved in exocytosis4.02E-02
177GO:0000910: cytokinesis4.19E-02
178GO:0007623: circadian rhythm4.19E-02
179GO:0010228: vegetative to reproductive phase transition of meristem4.39E-02
180GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.54E-02
181GO:0048573: photoperiodism, flowering4.90E-02
182GO:0006950: response to stress4.90E-02
183GO:0008380: RNA splicing4.99E-02
RankGO TermAdjusted P value
1GO:0047886: farnesol dehydrogenase activity0.00E+00
2GO:0008777: acetylornithine deacetylase activity0.00E+00
3GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
4GO:0046522: S-methyl-5-thioribose kinase activity0.00E+00
5GO:0050152: omega-amidase activity0.00E+00
6GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
7GO:0061799: cyclic pyranopterin monophosphate synthase activity0.00E+00
8GO:0004298: threonine-type endopeptidase activity7.43E-15
9GO:0008233: peptidase activity2.71E-08
10GO:0035064: methylated histone binding1.04E-05
11GO:0008137: NADH dehydrogenase (ubiquinone) activity3.80E-05
12GO:0008794: arsenate reductase (glutaredoxin) activity4.56E-05
13GO:0004576: oligosaccharyl transferase activity7.06E-05
14GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.11E-04
15GO:0031386: protein tag1.11E-04
16GO:0019786: Atg8-specific protease activity3.34E-04
17GO:0030611: arsenate reductase activity3.34E-04
18GO:0004560: alpha-L-fucosidase activity3.34E-04
19GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity3.34E-04
20GO:0019707: protein-cysteine S-acyltransferase activity3.34E-04
21GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.65E-04
22GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity7.29E-04
23GO:0004839: ubiquitin activating enzyme activity7.29E-04
24GO:0008428: ribonuclease inhibitor activity7.29E-04
25GO:1990585: hydroxyproline O-arabinosyltransferase activity7.29E-04
26GO:0004106: chorismate mutase activity7.29E-04
27GO:0019172: glyoxalase III activity7.29E-04
28GO:0004826: phenylalanine-tRNA ligase activity7.29E-04
29GO:0019779: Atg8 activating enzyme activity7.29E-04
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity7.29E-04
31GO:0004129: cytochrome-c oxidase activity8.32E-04
32GO:0015035: protein disulfide oxidoreductase activity8.51E-04
33GO:0004089: carbonate dehydratase activity1.07E-03
34GO:0004663: Rab geranylgeranyltransferase activity1.18E-03
35GO:0008430: selenium binding1.18E-03
36GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.18E-03
37GO:0005047: signal recognition particle binding1.18E-03
38GO:0032403: protein complex binding1.18E-03
39GO:0008649: rRNA methyltransferase activity1.18E-03
40GO:0003746: translation elongation factor activity1.43E-03
41GO:0051536: iron-sulfur cluster binding1.66E-03
42GO:0003999: adenine phosphoribosyltransferase activity1.70E-03
43GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.28E-03
44GO:0010011: auxin binding2.28E-03
45GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.28E-03
46GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.28E-03
47GO:0019776: Atg8 ligase activity2.28E-03
48GO:0005515: protein binding2.66E-03
49GO:0047134: protein-disulfide reductase activity2.84E-03
50GO:0008948: oxaloacetate decarboxylase activity2.91E-03
51GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.30E-03
52GO:0004791: thioredoxin-disulfide reductase activity3.55E-03
53GO:0051117: ATPase binding3.60E-03
54GO:0019887: protein kinase regulator activity4.33E-03
55GO:0004747: ribokinase activity4.33E-03
56GO:0004602: glutathione peroxidase activity4.33E-03
57GO:0008320: protein transmembrane transporter activity5.11E-03
58GO:0008235: metalloexopeptidase activity5.11E-03
59GO:0042162: telomeric DNA binding5.11E-03
60GO:0008121: ubiquinol-cytochrome-c reductase activity5.11E-03
61GO:0008143: poly(A) binding5.11E-03
62GO:0004034: aldose 1-epimerase activity5.94E-03
63GO:0043022: ribosome binding5.94E-03
64GO:0000166: nucleotide binding6.32E-03
65GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.73E-03
66GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.73E-03
67GO:0008889: glycerophosphodiester phosphodiesterase activity7.73E-03
68GO:0047617: acyl-CoA hydrolase activity8.68E-03
69GO:0045309: protein phosphorylated amino acid binding8.68E-03
70GO:0001055: RNA polymerase II activity8.68E-03
71GO:0050897: cobalt ion binding8.91E-03
72GO:0003697: single-stranded DNA binding9.77E-03
73GO:0008327: methyl-CpG binding1.07E-02
74GO:0001054: RNA polymerase I activity1.07E-02
75GO:0004177: aminopeptidase activity1.07E-02
76GO:0019904: protein domain specific binding1.07E-02
77GO:0046961: proton-transporting ATPase activity, rotational mechanism1.07E-02
78GO:0051539: 4 iron, 4 sulfur cluster binding1.12E-02
79GO:0001056: RNA polymerase III activity1.18E-02
80GO:0000976: transcription regulatory region sequence-specific DNA binding1.18E-02
81GO:0000049: tRNA binding1.18E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity1.29E-02
83GO:0043621: protein self-association1.37E-02
84GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.48E-02
85GO:0003712: transcription cofactor activity1.53E-02
86GO:0004725: protein tyrosine phosphatase activity1.65E-02
87GO:0003714: transcription corepressor activity1.77E-02
88GO:0005385: zinc ion transmembrane transporter activity1.77E-02
89GO:0043130: ubiquitin binding1.77E-02
90GO:0005528: FK506 binding1.77E-02
91GO:0005509: calcium ion binding1.86E-02
92GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.09E-02
93GO:0003756: protein disulfide isomerase activity2.45E-02
94GO:0005249: voltage-gated potassium channel activity2.74E-02
95GO:0004402: histone acetyltransferase activity2.74E-02
96GO:0004527: exonuclease activity2.89E-02
97GO:0046873: metal ion transmembrane transporter activity2.89E-02
98GO:0008080: N-acetyltransferase activity2.89E-02
99GO:0004722: protein serine/threonine phosphatase activity2.93E-02
100GO:0016853: isomerase activity3.05E-02
101GO:0050662: coenzyme binding3.05E-02
102GO:0004872: receptor activity3.20E-02
103GO:0003924: GTPase activity3.39E-02
104GO:0051015: actin filament binding3.69E-02
105GO:0008237: metallopeptidase activity4.02E-02
106GO:0008017: microtubule binding4.39E-02
107GO:0009931: calcium-dependent protein serine/threonine kinase activity4.72E-02
108GO:0004683: calmodulin-dependent protein kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
2GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
3GO:0097361: CIA complex0.00E+00
4GO:0005839: proteasome core complex7.43E-15
5GO:0000502: proteasome complex8.96E-15
6GO:0005829: cytosol2.85E-11
7GO:0005747: mitochondrial respiratory chain complex I9.23E-10
8GO:0019773: proteasome core complex, alpha-subunit complex1.73E-09
9GO:0045271: respiratory chain complex I6.97E-06
10GO:0000421: autophagosome membrane1.04E-05
11GO:0005737: cytoplasm7.58E-05
12GO:0008250: oligosaccharyltransferase complex1.11E-04
13GO:0031410: cytoplasmic vesicle2.09E-04
14GO:0005774: vacuolar membrane2.84E-04
15GO:0005662: DNA replication factor A complex3.34E-04
16GO:0019774: proteasome core complex, beta-subunit complex3.34E-04
17GO:0031966: mitochondrial membrane4.23E-04
18GO:0005773: vacuole4.47E-04
19GO:0071011: precatalytic spliceosome6.19E-04
20GO:0005697: telomerase holoenzyme complex7.29E-04
21GO:0035145: exon-exon junction complex7.29E-04
22GO:0071013: catalytic step 2 spliceosome8.32E-04
23GO:0008541: proteasome regulatory particle, lid subcomplex8.32E-04
24GO:0005838: proteasome regulatory particle1.18E-03
25GO:0005853: eukaryotic translation elongation factor 1 complex1.18E-03
26GO:0005750: mitochondrial respiratory chain complex III1.21E-03
27GO:0005753: mitochondrial proton-transporting ATP synthase complex1.35E-03
28GO:1990726: Lsm1-7-Pat1 complex1.70E-03
29GO:0005968: Rab-protein geranylgeranyltransferase complex1.70E-03
30GO:0005956: protein kinase CK2 complex1.70E-03
31GO:0033588: Elongator holoenzyme complex1.70E-03
32GO:0005775: vacuolar lumen1.70E-03
33GO:0005719: nuclear euchromatin1.70E-03
34GO:0008076: voltage-gated potassium channel complex1.70E-03
35GO:0005776: autophagosome2.28E-03
36GO:0016471: vacuolar proton-transporting V-type ATPase complex2.28E-03
37GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)2.28E-03
38GO:0000445: THO complex part of transcription export complex2.28E-03
39GO:0005783: endoplasmic reticulum2.64E-03
40GO:0005746: mitochondrial respiratory chain2.91E-03
41GO:0000974: Prp19 complex3.60E-03
42GO:0005771: multivesicular body3.60E-03
43GO:0032588: trans-Golgi network membrane3.60E-03
44GO:0030904: retromer complex3.60E-03
45GO:0031209: SCAR complex3.60E-03
46GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.17E-03
47GO:0005801: cis-Golgi network4.33E-03
48GO:0005885: Arp2/3 protein complex4.33E-03
49GO:0005874: microtubule4.77E-03
50GO:0005732: small nucleolar ribonucleoprotein complex5.06E-03
51GO:0000347: THO complex5.11E-03
52GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.11E-03
53GO:0005794: Golgi apparatus5.55E-03
54GO:0005688: U6 snRNP5.94E-03
55GO:0005677: chromatin silencing complex6.81E-03
56GO:0046540: U4/U6 x U5 tri-snRNP complex6.81E-03
57GO:0005763: mitochondrial small ribosomal subunit7.73E-03
58GO:0005736: DNA-directed RNA polymerase I complex7.73E-03
59GO:0005666: DNA-directed RNA polymerase III complex8.68E-03
60GO:0000325: plant-type vacuole8.91E-03
61GO:0005665: DNA-directed RNA polymerase II, core complex1.18E-02
62GO:0009508: plastid chromosome1.29E-02
63GO:0005789: endoplasmic reticulum membrane1.62E-02
64GO:0005769: early endosome1.65E-02
65GO:0000419: DNA-directed RNA polymerase V complex1.65E-02
66GO:0009507: chloroplast1.80E-02
67GO:0005730: nucleolus1.96E-02
68GO:0022626: cytosolic ribosome2.02E-02
69GO:0016607: nuclear speck2.09E-02
70GO:0000785: chromatin3.52E-02
71GO:0071944: cell periphery3.69E-02
72GO:0005759: mitochondrial matrix3.82E-02
73GO:0032580: Golgi cisterna membrane3.85E-02
74GO:0009295: nucleoid4.02E-02
75GO:0005739: mitochondrion4.34E-02
76GO:0000932: P-body4.37E-02
77GO:0005788: endoplasmic reticulum lumen4.54E-02
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Gene type



Gene DE type