co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0000025: maltose catabolic process	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0090279: regulation of calcium ion import	0.00E+00
9	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0015717: triose phosphate transport	0.00E+00
12	GO:1905177: tracheary element differentiation	0.00E+00
13	GO:0007172: signal complex assembly	0.00E+00
14	GO:0071474: cellular hyperosmotic response	0.00E+00
15	GO:0009773: photosynthetic electron transport in photosystem I	2.72E-08
16	GO:0015979: photosynthesis	1.69E-07
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.85E-06
18	GO:0006000: fructose metabolic process	2.39E-05
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.22E-05
20	GO:0005983: starch catabolic process	8.11E-05
21	GO:0006094: gluconeogenesis	9.89E-05
22	GO:0009735: response to cytokinin	1.68E-04
23	GO:0042549: photosystem II stabilization	2.05E-04
24	GO:0061077: chaperone-mediated protein folding	2.53E-04
25	GO:1901259: chloroplast rRNA processing	2.77E-04
26	GO:0009409: response to cold	2.86E-04
27	GO:0010450: inflorescence meristem growth	3.92E-04
28	GO:0000023: maltose metabolic process	3.92E-04
29	GO:0000476: maturation of 4.5S rRNA	3.92E-04
30	GO:0000967: rRNA 5'-end processing	3.92E-04
31	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.92E-04
32	GO:0005980: glycogen catabolic process	3.92E-04
33	GO:0015671: oxygen transport	3.92E-04
34	GO:0010480: microsporocyte differentiation	3.92E-04
35	GO:1902025: nitrate import	3.92E-04
36	GO:0080093: regulation of photorespiration	3.92E-04
37	GO:0043007: maintenance of rDNA	3.92E-04
38	GO:0090548: response to nitrate starvation	3.92E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	3.92E-04
40	GO:0010028: xanthophyll cycle	3.92E-04
41	GO:0005978: glycogen biosynthetic process	4.48E-04
42	GO:0006002: fructose 6-phosphate metabolic process	5.48E-04
43	GO:0032544: plastid translation	5.48E-04
44	GO:0051262: protein tetramerization	8.49E-04
45	GO:0034470: ncRNA processing	8.49E-04
46	GO:0019388: galactose catabolic process	8.49E-04
47	GO:0005976: polysaccharide metabolic process	8.49E-04
48	GO:0090342: regulation of cell aging	8.49E-04
49	GO:0031648: protein destabilization	8.49E-04
50	GO:0016122: xanthophyll metabolic process	8.49E-04
51	GO:0006782: protoporphyrinogen IX biosynthetic process	9.02E-04
52	GO:0048829: root cap development	9.02E-04
53	GO:0006810: transport	1.09E-03
54	GO:0010582: floral meristem determinacy	1.19E-03
55	GO:0015995: chlorophyll biosynthetic process	1.25E-03
56	GO:0005986: sucrose biosynthetic process	1.34E-03
57	GO:0010102: lateral root morphogenesis	1.34E-03
58	GO:0006006: glucose metabolic process	1.34E-03
59	GO:0048281: inflorescence morphogenesis	1.38E-03
60	GO:0006518: peptide metabolic process	1.38E-03
61	GO:0010623: programmed cell death involved in cell development	1.38E-03
62	GO:0080055: low-affinity nitrate transport	1.38E-03
63	GO:0035436: triose phosphate transmembrane transport	1.38E-03
64	GO:0016050: vesicle organization	1.38E-03
65	GO:0045165: cell fate commitment	1.38E-03
66	GO:0010207: photosystem II assembly	1.51E-03
67	GO:0009266: response to temperature stimulus	1.51E-03
68	GO:0009934: regulation of meristem structural organization	1.51E-03
69	GO:0010239: chloroplast mRNA processing	1.99E-03
70	GO:0010306: rhamnogalacturonan II biosynthetic process	1.99E-03
71	GO:0010731: protein glutathionylation	1.99E-03
72	GO:1901332: negative regulation of lateral root development	1.99E-03
73	GO:0009590: detection of gravity	1.99E-03
74	GO:0010148: transpiration	1.99E-03
75	GO:1902358: sulfate transmembrane transport	1.99E-03
76	GO:0009944: polarity specification of adaxial/abaxial axis	2.10E-03
77	GO:0006631: fatty acid metabolic process	2.40E-03
78	GO:0045490: pectin catabolic process	2.66E-03
79	GO:0010023: proanthocyanidin biosynthetic process	2.67E-03
80	GO:0051322: anaphase	2.67E-03
81	GO:0019464: glycine decarboxylation via glycine cleavage system	2.67E-03
82	GO:0009765: photosynthesis, light harvesting	2.67E-03
83	GO:0006109: regulation of carbohydrate metabolic process	2.67E-03
84	GO:0015994: chlorophyll metabolic process	2.67E-03
85	GO:0022622: root system development	2.67E-03
86	GO:0006546: glycine catabolic process	2.67E-03
87	GO:0010600: regulation of auxin biosynthetic process	2.67E-03
88	GO:0006552: leucine catabolic process	2.67E-03
89	GO:0010508: positive regulation of autophagy	2.67E-03
90	GO:0051205: protein insertion into membrane	2.67E-03
91	GO:0015713: phosphoglycerate transport	2.67E-03
92	GO:0010021: amylopectin biosynthetic process	2.67E-03
93	GO:0006808: regulation of nitrogen utilization	2.67E-03
94	GO:0015976: carbon utilization	2.67E-03
95	GO:0010017: red or far-red light signaling pathway	2.78E-03
96	GO:0010158: abaxial cell fate specification	3.42E-03
97	GO:0006465: signal peptide processing	3.42E-03
98	GO:0045038: protein import into chloroplast thylakoid membrane	3.42E-03
99	GO:0006097: glyoxylate cycle	3.42E-03
100	GO:0035434: copper ion transmembrane transport	3.42E-03
101	GO:0006461: protein complex assembly	3.42E-03
102	GO:1902183: regulation of shoot apical meristem development	3.42E-03
103	GO:0000470: maturation of LSU-rRNA	4.23E-03
104	GO:0009913: epidermal cell differentiation	4.23E-03
105	GO:0010190: cytochrome b6f complex assembly	4.23E-03
106	GO:0003006: developmental process involved in reproduction	4.23E-03
107	GO:0009643: photosynthetic acclimation	4.23E-03
108	GO:0019252: starch biosynthetic process	4.81E-03
109	GO:0009955: adaxial/abaxial pattern specification	5.09E-03
110	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.09E-03
111	GO:0006458: 'de novo' protein folding	5.09E-03
112	GO:0042026: protein refolding	5.09E-03
113	GO:0009658: chloroplast organization	5.19E-03
114	GO:0070370: cellular heat acclimation	6.02E-03
115	GO:0048437: floral organ development	6.02E-03
116	GO:0009645: response to low light intensity stimulus	6.02E-03
117	GO:0022904: respiratory electron transport chain	6.02E-03
118	GO:0008272: sulfate transport	6.02E-03
119	GO:0010103: stomatal complex morphogenesis	6.02E-03
120	GO:0032880: regulation of protein localization	6.02E-03
121	GO:0010161: red light signaling pathway	6.02E-03
122	GO:0010928: regulation of auxin mediated signaling pathway	7.00E-03
123	GO:0009704: de-etiolation	7.00E-03
124	GO:0006353: DNA-templated transcription, termination	7.00E-03
125	GO:0010027: thylakoid membrane organization	7.46E-03
126	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.58E-03
127	GO:0001558: regulation of cell growth	8.03E-03
128	GO:0009657: plastid organization	8.03E-03
129	GO:0010093: specification of floral organ identity	8.03E-03
130	GO:0051865: protein autoubiquitination	9.12E-03
131	GO:2000024: regulation of leaf development	9.12E-03
132	GO:0019432: triglyceride biosynthetic process	9.12E-03
133	GO:0006783: heme biosynthetic process	9.12E-03
134	GO:0048507: meristem development	9.12E-03
135	GO:0048589: developmental growth	9.12E-03
136	GO:0016311: dephosphorylation	9.27E-03
137	GO:0005975: carbohydrate metabolic process	9.42E-03
138	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-02
139	GO:0042761: very long-chain fatty acid biosynthetic process	1.03E-02
140	GO:0005982: starch metabolic process	1.03E-02
141	GO:0042742: defense response to bacterium	1.13E-02
142	GO:0009631: cold acclimation	1.13E-02
143	GO:0031627: telomeric loop formation	1.14E-02
144	GO:0010015: root morphogenesis	1.27E-02
145	GO:0019684: photosynthesis, light reaction	1.27E-02
146	GO:0009089: lysine biosynthetic process via diaminopimelate	1.27E-02
147	GO:0009073: aromatic amino acid family biosynthetic process	1.27E-02
148	GO:0043085: positive regulation of catalytic activity	1.27E-02
149	GO:0009750: response to fructose	1.27E-02
150	GO:0048229: gametophyte development	1.27E-02
151	GO:0030154: cell differentiation	1.33E-02
152	GO:0010152: pollen maturation	1.40E-02
153	GO:0071365: cellular response to auxin stimulus	1.40E-02
154	GO:2000012: regulation of auxin polar transport	1.53E-02
155	GO:0010628: positive regulation of gene expression	1.53E-02
156	GO:0006108: malate metabolic process	1.53E-02
157	GO:0018107: peptidyl-threonine phosphorylation	1.53E-02
158	GO:0009718: anthocyanin-containing compound biosynthetic process	1.53E-02
159	GO:0010075: regulation of meristem growth	1.53E-02
160	GO:0009767: photosynthetic electron transport chain	1.53E-02
161	GO:0006302: double-strand break repair	1.66E-02
162	GO:0048467: gynoecium development	1.66E-02
163	GO:0009933: meristem structural organization	1.66E-02
164	GO:0019253: reductive pentose-phosphate cycle	1.66E-02
165	GO:0009644: response to high light intensity	1.73E-02
166	GO:0005985: sucrose metabolic process	1.81E-02
167	GO:0010030: positive regulation of seed germination	1.81E-02
168	GO:0010025: wax biosynthetic process	1.95E-02
169	GO:0006289: nucleotide-excision repair	2.10E-02
170	GO:0051302: regulation of cell division	2.25E-02
171	GO:0009768: photosynthesis, light harvesting in photosystem I	2.25E-02
172	GO:0007017: microtubule-based process	2.25E-02
173	GO:0006825: copper ion transport	2.25E-02
174	GO:0019915: lipid storage	2.41E-02
175	GO:0051321: meiotic cell cycle	2.41E-02
176	GO:0003333: amino acid transmembrane transport	2.41E-02
177	GO:0006096: glycolytic process	2.56E-02
178	GO:0043086: negative regulation of catalytic activity	2.56E-02
179	GO:0030245: cellulose catabolic process	2.57E-02
180	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.57E-02
181	GO:0035428: hexose transmembrane transport	2.57E-02
182	GO:0019748: secondary metabolic process	2.57E-02
183	GO:0009686: gibberellin biosynthetic process	2.73E-02
184	GO:0071369: cellular response to ethylene stimulus	2.73E-02
185	GO:0001944: vasculature development	2.73E-02
186	GO:0080167: response to karrikin	2.80E-02
187	GO:0048443: stamen development	2.90E-02
188	GO:0010089: xylem development	2.90E-02
189	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.07E-02
190	GO:0008284: positive regulation of cell proliferation	3.07E-02
191	GO:0048653: anther development	3.25E-02
192	GO:0042631: cellular response to water deprivation	3.25E-02
193	GO:0042335: cuticle development	3.25E-02
194	GO:0000413: protein peptidyl-prolyl isomerization	3.25E-02
195	GO:0010051: xylem and phloem pattern formation	3.25E-02
196	GO:0009958: positive gravitropism	3.42E-02
197	GO:0010154: fruit development	3.42E-02
198	GO:0006662: glycerol ether metabolic process	3.42E-02
199	GO:0048868: pollen tube development	3.42E-02
200	GO:0046323: glucose import	3.42E-02
201	GO:0045454: cell redox homeostasis	3.51E-02
202	GO:0009646: response to absence of light	3.61E-02
203	GO:0048825: cotyledon development	3.79E-02
204	GO:0071554: cell wall organization or biogenesis	3.98E-02
205	GO:0048235: pollen sperm cell differentiation	4.17E-02
206	GO:0071281: cellular response to iron ion	4.36E-02
207	GO:1901657: glycosyl compound metabolic process	4.36E-02
208	GO:0000910: cytokinesis	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
2	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0017046: peptide hormone binding	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
8	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
9	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.85E-06
10	GO:0030570: pectate lyase activity	2.05E-05
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.22E-05
12	GO:0042277: peptide binding	9.22E-05
13	GO:0019843: rRNA binding	3.08E-04
14	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.92E-04
15	GO:0005227: calcium activated cation channel activity	3.92E-04
16	GO:0008184: glycogen phosphorylase activity	3.92E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.92E-04
18	GO:0004645: phosphorylase activity	3.92E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	3.92E-04
20	GO:0005344: oxygen transporter activity	3.92E-04
21	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.92E-04
22	GO:0048038: quinone binding	6.43E-04
23	GO:0018708: thiol S-methyltransferase activity	8.49E-04
24	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.49E-04
25	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.49E-04
26	GO:0004614: phosphoglucomutase activity	8.49E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.49E-04
28	GO:0008967: phosphoglycolate phosphatase activity	8.49E-04
29	GO:0016868: intramolecular transferase activity, phosphotransferases	8.49E-04
30	GO:0010297: heteropolysaccharide binding	8.49E-04
31	GO:0047372: acylglycerol lipase activity	1.04E-03
32	GO:0044183: protein binding involved in protein folding	1.04E-03
33	GO:0004565: beta-galactosidase activity	1.34E-03
34	GO:0043169: cation binding	1.38E-03
35	GO:0005504: fatty acid binding	1.38E-03
36	GO:0017150: tRNA dihydrouridine synthase activity	1.38E-03
37	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.38E-03
38	GO:0071917: triose-phosphate transmembrane transporter activity	1.38E-03
39	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.38E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.99E-03
41	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.99E-03
42	GO:0016851: magnesium chelatase activity	1.99E-03
43	GO:0043023: ribosomal large subunit binding	1.99E-03
44	GO:0004857: enzyme inhibitor activity	2.10E-03
45	GO:0005528: FK506 binding	2.10E-03
46	GO:0033612: receptor serine/threonine kinase binding	2.54E-03
47	GO:0010011: auxin binding	2.67E-03
48	GO:0045430: chalcone isomerase activity	2.67E-03
49	GO:0010328: auxin influx transmembrane transporter activity	2.67E-03
50	GO:0019199: transmembrane receptor protein kinase activity	2.67E-03
51	GO:0015120: phosphoglycerate transmembrane transporter activity	2.67E-03
52	GO:0043621: protein self-association	2.94E-03
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.24E-03
54	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	3.42E-03
55	GO:0004332: fructose-bisphosphate aldolase activity	4.23E-03
56	GO:0016615: malate dehydrogenase activity	4.23E-03
57	GO:2001070: starch binding	4.23E-03
58	GO:0051920: peroxiredoxin activity	5.09E-03
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.09E-03
60	GO:0030060: L-malate dehydrogenase activity	5.09E-03
61	GO:0005261: cation channel activity	5.09E-03
62	GO:0004033: aldo-keto reductase (NADP) activity	7.00E-03
63	GO:0005337: nucleoside transmembrane transporter activity	7.00E-03
64	GO:0016209: antioxidant activity	7.00E-03
65	GO:0008271: secondary active sulfate transmembrane transporter activity	8.03E-03
66	GO:0005375: copper ion transmembrane transporter activity	8.03E-03
67	GO:0016829: lyase activity	9.01E-03
68	GO:0008047: enzyme activator activity	1.14E-02
69	GO:0003691: double-stranded telomeric DNA binding	1.27E-02
70	GO:0015116: sulfate transmembrane transporter activity	1.40E-02
71	GO:0004521: endoribonuclease activity	1.40E-02
72	GO:0009055: electron carrier activity	1.45E-02
73	GO:0004089: carbonate dehydratase activity	1.53E-02
74	GO:0004185: serine-type carboxypeptidase activity	1.60E-02
75	GO:0008083: growth factor activity	1.66E-02
76	GO:0003735: structural constituent of ribosome	1.67E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	1.73E-02
78	GO:0015293: symporter activity	1.80E-02
79	GO:0031409: pigment binding	1.95E-02
80	GO:0000287: magnesium ion binding	2.09E-02
81	GO:0008408: 3'-5' exonuclease activity	2.41E-02
82	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.64E-02
83	GO:0008810: cellulase activity	2.73E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	2.73E-02
85	GO:0047134: protein-disulfide reductase activity	3.07E-02
86	GO:0015035: protein disulfide oxidoreductase activity	3.17E-02
87	GO:0001085: RNA polymerase II transcription factor binding	3.42E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	3.61E-02
89	GO:0005355: glucose transmembrane transporter activity	3.61E-02
90	GO:0004252: serine-type endopeptidase activity	4.27E-02
91	GO:0030170: pyridoxal phosphate binding	4.27E-02
92	GO:0000156: phosphorelay response regulator activity	4.36E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.36E-02
94	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.38E-02
95	GO:0008483: transaminase activity	4.76E-02
96	GO:0005200: structural constituent of cytoskeleton	4.76E-02
97	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.76E-02
98	GO:0016413: O-acetyltransferase activity	4.96E-02
99	GO:0016491: oxidoreductase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0009507: chloroplast	1.75E-24
6	GO:0009535: chloroplast thylakoid membrane	5.87E-23
7	GO:0009534: chloroplast thylakoid	4.54E-22
8	GO:0009570: chloroplast stroma	3.57E-19
9	GO:0009941: chloroplast envelope	2.09E-17
10	GO:0009579: thylakoid	2.79E-10
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.06E-09
12	GO:0030095: chloroplast photosystem II	8.87E-08
13	GO:0009543: chloroplast thylakoid lumen	2.63E-07
14	GO:0010319: stromule	9.59E-05
15	GO:0009654: photosystem II oxygen evolving complex	2.22E-04
16	GO:0010287: plastoglobule	2.78E-04
17	GO:0031977: thylakoid lumen	3.75E-04
18	GO:0000791: euchromatin	3.92E-04
19	GO:0005787: signal peptidase complex	3.92E-04
20	GO:0009344: nitrite reductase complex [NAD(P)H]	3.92E-04
21	GO:0009538: photosystem I reaction center	4.48E-04
22	GO:0009501: amyloplast	4.48E-04
23	GO:0019898: extrinsic component of membrane	5.89E-04
24	GO:0030093: chloroplast photosystem I	8.49E-04
25	GO:0030870: Mre11 complex	8.49E-04
26	GO:0009295: nucleoid	8.84E-04
27	GO:0009508: plastid chromosome	1.34E-03
28	GO:0010007: magnesium chelatase complex	1.38E-03
29	GO:0048046: apoplast	1.85E-03
30	GO:0005960: glycine cleavage complex	1.99E-03
31	GO:0000795: synaptonemal complex	3.42E-03
32	GO:0005840: ribosome	4.24E-03
33	GO:0009523: photosystem II	4.81E-03
34	GO:0009840: chloroplastic endopeptidase Clp complex	5.09E-03
35	GO:0009533: chloroplast stromal thylakoid	6.02E-03
36	GO:0009706: chloroplast inner membrane	6.12E-03
37	GO:0005874: microtubule	6.83E-03
38	GO:0031305: integral component of mitochondrial inner membrane	7.00E-03
39	GO:0000783: nuclear telomere cap complex	8.03E-03
40	GO:0045298: tubulin complex	9.12E-03
41	GO:0005763: mitochondrial small ribosomal subunit	9.12E-03
42	GO:0055028: cortical microtubule	1.14E-02
43	GO:0005740: mitochondrial envelope	1.14E-02
44	GO:0009574: preprophase band	1.53E-02
45	GO:0030076: light-harvesting complex	1.81E-02
46	GO:0042651: thylakoid membrane	2.25E-02
47	GO:0015935: small ribosomal subunit	2.41E-02
48	GO:0009532: plastid stroma	2.41E-02
49	GO:0009522: photosystem I	3.61E-02
50	GO:0000785: chromatin	4.17E-02
51	GO:0009536: plastid	4.44E-02