co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009236: cobalamin biosynthetic process	0.00E+00
2	GO:0048870: cell motility	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0018293: protein-FAD linkage	0.00E+00
5	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0051776: detection of redox state	0.00E+00
8	GO:0046292: formaldehyde metabolic process	0.00E+00
9	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
10	GO:0006069: ethanol oxidation	0.00E+00
11	GO:0006721: terpenoid metabolic process	0.00E+00
12	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.71E-08
13	GO:0009853: photorespiration	4.96E-08
14	GO:0006099: tricarboxylic acid cycle	2.45E-05
15	GO:0015991: ATP hydrolysis coupled proton transport	2.81E-05
16	GO:0055114: oxidation-reduction process	5.92E-05
17	GO:0045454: cell redox homeostasis	9.87E-05
18	GO:0006555: methionine metabolic process	1.86E-04
19	GO:0006796: phosphate-containing compound metabolic process	1.86E-04
20	GO:0019509: L-methionine salvage from methylthioadenosine	2.52E-04
21	GO:0050790: regulation of catalytic activity	3.27E-04
22	GO:0019354: siroheme biosynthetic process	3.67E-04
23	GO:0016487: farnesol metabolic process	3.67E-04
24	GO:0009240: isopentenyl diphosphate biosynthetic process	3.67E-04
25	GO:2000025: regulation of leaf formation	3.67E-04
26	GO:0006481: C-terminal protein methylation	3.67E-04
27	GO:0031539: positive regulation of anthocyanin metabolic process	3.67E-04
28	GO:0006007: glucose catabolic process	3.67E-04
29	GO:0031468: nuclear envelope reassembly	3.67E-04
30	GO:0045905: positive regulation of translational termination	8.00E-04
31	GO:0019441: tryptophan catabolic process to kynurenine	8.00E-04
32	GO:0097054: L-glutamate biosynthetic process	8.00E-04
33	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.00E-04
34	GO:0045901: positive regulation of translational elongation	8.00E-04
35	GO:0006452: translational frameshifting	8.00E-04
36	GO:0043255: regulation of carbohydrate biosynthetic process	8.00E-04
37	GO:0007163: establishment or maintenance of cell polarity	8.00E-04
38	GO:0080026: response to indolebutyric acid	8.00E-04
39	GO:0006432: phenylalanyl-tRNA aminoacylation	8.00E-04
40	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.00E-04
41	GO:0046417: chorismate metabolic process	1.29E-03
42	GO:0015940: pantothenate biosynthetic process	1.29E-03
43	GO:0071492: cellular response to UV-A	1.29E-03
44	GO:0045793: positive regulation of cell size	1.29E-03
45	GO:0006760: folic acid-containing compound metabolic process	1.29E-03
46	GO:0090708: specification of plant organ axis polarity	1.29E-03
47	GO:0008333: endosome to lysosome transport	1.29E-03
48	GO:0080024: indolebutyric acid metabolic process	1.87E-03
49	GO:0032877: positive regulation of DNA endoreduplication	1.87E-03
50	GO:0006624: vacuolar protein processing	1.87E-03
51	GO:1902358: sulfate transmembrane transport	1.87E-03
52	GO:0006166: purine ribonucleoside salvage	1.87E-03
53	GO:0006107: oxaloacetate metabolic process	1.87E-03
54	GO:0006537: glutamate biosynthetic process	1.87E-03
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.87E-03
56	GO:0009963: positive regulation of flavonoid biosynthetic process	1.87E-03
57	GO:1901332: negative regulation of lateral root development	1.87E-03
58	GO:0006168: adenine salvage	1.87E-03
59	GO:0006487: protein N-linked glycosylation	1.91E-03
60	GO:0015992: proton transport	2.32E-03
61	GO:0034613: cellular protein localization	2.51E-03
62	GO:0010109: regulation of photosynthesis	2.51E-03
63	GO:0019676: ammonia assimilation cycle	2.51E-03
64	GO:0051781: positive regulation of cell division	2.51E-03
65	GO:0071486: cellular response to high light intensity	2.51E-03
66	GO:0010387: COP9 signalosome assembly	2.51E-03
67	GO:0009765: photosynthesis, light harvesting	2.51E-03
68	GO:0071249: cellular response to nitrate	2.51E-03
69	GO:0006221: pyrimidine nucleotide biosynthetic process	2.51E-03
70	GO:0002098: tRNA wobble uridine modification	2.51E-03
71	GO:0006749: glutathione metabolic process	2.51E-03
72	GO:0032366: intracellular sterol transport	2.51E-03
73	GO:0006979: response to oxidative stress	3.18E-03
74	GO:0044209: AMP salvage	3.21E-03
75	GO:0018344: protein geranylgeranylation	3.21E-03
76	GO:0030041: actin filament polymerization	3.21E-03
77	GO:0080022: primary root development	3.53E-03
78	GO:0051603: proteolysis involved in cellular protein catabolic process	3.62E-03
79	GO:0006662: glycerol ether metabolic process	3.80E-03
80	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.96E-03
81	GO:0007035: vacuolar acidification	3.96E-03
82	GO:0009117: nucleotide metabolic process	3.96E-03
83	GO:0006574: valine catabolic process	3.96E-03
84	GO:0015986: ATP synthesis coupled proton transport	4.09E-03
85	GO:1901001: negative regulation of response to salt stress	4.78E-03
86	GO:0010090: trichome morphogenesis	5.35E-03
87	GO:0000338: protein deneddylation	5.64E-03
88	GO:0022904: respiratory electron transport chain	5.64E-03
89	GO:0010286: heat acclimation	6.05E-03
90	GO:0000028: ribosomal small subunit assembly	6.56E-03
91	GO:0045010: actin nucleation	6.56E-03
92	GO:0010928: regulation of auxin mediated signaling pathway	6.56E-03
93	GO:0010439: regulation of glucosinolate biosynthetic process	6.56E-03
94	GO:0035265: organ growth	6.56E-03
95	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.56E-03
96	GO:0009690: cytokinin metabolic process	6.56E-03
97	GO:0006506: GPI anchor biosynthetic process	6.56E-03
98	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	7.19E-03
99	GO:0010099: regulation of photomorphogenesis	7.52E-03
100	GO:0022900: electron transport chain	7.52E-03
101	GO:0006754: ATP biosynthetic process	8.54E-03
102	GO:0000902: cell morphogenesis	8.54E-03
103	GO:0046685: response to arsenic-containing substance	8.54E-03
104	GO:0048527: lateral root development	1.03E-02
105	GO:0043069: negative regulation of programmed cell death	1.07E-02
106	GO:0000103: sulfate assimilation	1.07E-02
107	GO:0034599: cellular response to oxidative stress	1.18E-02
108	GO:0006378: mRNA polyadenylation	1.19E-02
109	GO:0010015: root morphogenesis	1.19E-02
110	GO:0072593: reactive oxygen species metabolic process	1.19E-02
111	GO:0009073: aromatic amino acid family biosynthetic process	1.19E-02
112	GO:0016925: protein sumoylation	1.31E-02
113	GO:0010152: pollen maturation	1.31E-02
114	GO:0006108: malate metabolic process	1.43E-02
115	GO:0006829: zinc II ion transport	1.43E-02
116	GO:0006807: nitrogen compound metabolic process	1.43E-02
117	GO:0009691: cytokinin biosynthetic process	1.43E-02
118	GO:0009926: auxin polar transport	1.46E-02
119	GO:0009640: photomorphogenesis	1.46E-02
120	GO:0002237: response to molecule of bacterial origin	1.56E-02
121	GO:0007030: Golgi organization	1.69E-02
122	GO:0010039: response to iron ion	1.69E-02
123	GO:0009826: unidimensional cell growth	1.81E-02
124	GO:0006071: glycerol metabolic process	1.82E-02
125	GO:0042753: positive regulation of circadian rhythm	1.82E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	1.96E-02
127	GO:0009116: nucleoside metabolic process	1.96E-02
128	GO:0009585: red, far-red light phototransduction	1.97E-02
129	GO:0010224: response to UV-B	2.04E-02
130	GO:0006970: response to osmotic stress	2.09E-02
131	GO:0051302: regulation of cell division	2.11E-02
132	GO:0008299: isoprenoid biosynthetic process	2.11E-02
133	GO:0010431: seed maturation	2.25E-02
134	GO:0019915: lipid storage	2.25E-02
135	GO:0061077: chaperone-mediated protein folding	2.25E-02
136	GO:0010017: red or far-red light signaling pathway	2.40E-02
137	GO:0016226: iron-sulfur cluster assembly	2.40E-02
138	GO:0080167: response to karrikin	2.49E-02
139	GO:0006012: galactose metabolic process	2.56E-02
140	GO:0009294: DNA mediated transformation	2.56E-02
141	GO:0016569: covalent chromatin modification	2.64E-02
142	GO:0009555: pollen development	2.66E-02
143	GO:0010089: xylem development	2.71E-02
144	GO:0048443: stamen development	2.71E-02
145	GO:0042147: retrograde transport, endosome to Golgi	2.87E-02
146	GO:0034220: ion transmembrane transport	3.04E-02
147	GO:0010118: stomatal movement	3.04E-02
148	GO:0009958: positive gravitropism	3.20E-02
149	GO:0006886: intracellular protein transport	3.24E-02
150	GO:0061025: membrane fusion	3.37E-02
151	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.72E-02
152	GO:0016042: lipid catabolic process	3.90E-02
153	GO:0009651: response to salt stress	4.00E-02
154	GO:0006914: autophagy	4.27E-02
155	GO:0051607: defense response to virus	4.64E-02
156	GO:0000910: cytokinesis	4.64E-02
157	GO:0010150: leaf senescence	4.83E-02
158	GO:0016126: sterol biosynthetic process	4.83E-02
159	GO:0007623: circadian rhythm	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
4	GO:0050152: omega-amidase activity	0.00E+00
5	GO:0015930: glutamate synthase activity	0.00E+00
6	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
7	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
8	GO:0047886: farnesol dehydrogenase activity	0.00E+00
9	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.33E-06
10	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.13E-05
11	GO:0004129: cytochrome-c oxidase activity	5.66E-05
12	GO:0008794: arsenate reductase (glutaredoxin) activity	5.66E-05
13	GO:0010011: auxin binding	8.29E-05
14	GO:0004576: oligosaccharyl transferase activity	8.29E-05
15	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.30E-04
16	GO:0051536: iron-sulfur cluster binding	1.69E-04
17	GO:0015035: protein disulfide oxidoreductase activity	1.75E-04
18	GO:0050897: cobalt ion binding	2.09E-04
19	GO:0004427: inorganic diphosphatase activity	3.27E-04
20	GO:0030611: arsenate reductase activity	3.67E-04
21	GO:0016041: glutamate synthase (ferredoxin) activity	3.67E-04
22	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	3.67E-04
23	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.67E-04
24	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	3.67E-04
25	GO:0019707: protein-cysteine S-acyltransferase activity	3.67E-04
26	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.35E-04
27	GO:0015078: hydrogen ion transmembrane transporter activity	5.01E-04
28	GO:0004197: cysteine-type endopeptidase activity	6.22E-04
29	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.75E-04
30	GO:0047617: acyl-CoA hydrolase activity	7.09E-04
31	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	8.00E-04
32	GO:0004106: chorismate mutase activity	8.00E-04
33	GO:0004826: phenylalanine-tRNA ligase activity	8.00E-04
34	GO:0004061: arylformamidase activity	8.00E-04
35	GO:0046961: proton-transporting ATPase activity, rotational mechanism	9.51E-04
36	GO:0016805: dipeptidase activity	1.29E-03
37	GO:0052692: raffinose alpha-galactosidase activity	1.29E-03
38	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.29E-03
39	GO:0008430: selenium binding	1.29E-03
40	GO:0004557: alpha-galactosidase activity	1.29E-03
41	GO:0032403: protein complex binding	1.29E-03
42	GO:0004663: Rab geranylgeranyltransferase activity	1.29E-03
43	GO:0000254: C-4 methylsterol oxidase activity	1.87E-03
44	GO:0035529: NADH pyrophosphatase activity	1.87E-03
45	GO:0003999: adenine phosphoribosyltransferase activity	1.87E-03
46	GO:0016787: hydrolase activity	2.28E-03
47	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.51E-03
48	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.51E-03
49	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.51E-03
50	GO:0005496: steroid binding	3.21E-03
51	GO:0031386: protein tag	3.21E-03
52	GO:0051538: 3 iron, 4 sulfur cluster binding	3.21E-03
53	GO:0008177: succinate dehydrogenase (ubiquinone) activity	3.21E-03
54	GO:0016651: oxidoreductase activity, acting on NAD(P)H	3.21E-03
55	GO:0047134: protein-disulfide reductase activity	3.26E-03
56	GO:0008234: cysteine-type peptidase activity	3.94E-03
57	GO:0051117: ATPase binding	3.96E-03
58	GO:0016462: pyrophosphatase activity	3.96E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	4.09E-03
60	GO:0016853: isomerase activity	4.09E-03
61	GO:0016788: hydrolase activity, acting on ester bonds	4.63E-03
62	GO:0051920: peroxiredoxin activity	4.78E-03
63	GO:0070300: phosphatidic acid binding	4.78E-03
64	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.78E-03
65	GO:0008235: metalloexopeptidase activity	5.64E-03
66	GO:0042162: telomeric DNA binding	5.64E-03
67	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.64E-03
68	GO:0008143: poly(A) binding	5.64E-03
69	GO:0008320: protein transmembrane transporter activity	5.64E-03
70	GO:0016209: antioxidant activity	6.56E-03
71	GO:0035064: methylated histone binding	6.56E-03
72	GO:0004034: aldose 1-epimerase activity	6.56E-03
73	GO:0043022: ribosome binding	6.56E-03
74	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.56E-03
75	GO:0008271: secondary active sulfate transmembrane transporter activity	7.52E-03
76	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	8.54E-03
77	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.54E-03
78	GO:0001055: RNA polymerase II activity	9.60E-03
79	GO:0030145: manganese ion binding	1.03E-02
80	GO:0001054: RNA polymerase I activity	1.19E-02
81	GO:0004177: aminopeptidase activity	1.19E-02
82	GO:0009055: electron carrier activity	1.25E-02
83	GO:0051539: 4 iron, 4 sulfur cluster binding	1.29E-02
84	GO:0015116: sulfate transmembrane transporter activity	1.31E-02
85	GO:0001056: RNA polymerase III activity	1.31E-02
86	GO:0000049: tRNA binding	1.31E-02
87	GO:0004089: carbonate dehydratase activity	1.43E-02
88	GO:0004022: alcohol dehydrogenase (NAD) activity	1.43E-02
89	GO:0004175: endopeptidase activity	1.56E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	1.58E-02
91	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
92	GO:0004725: protein tyrosine phosphatase activity	1.82E-02
93	GO:0043130: ubiquitin binding	1.96E-02
94	GO:0005528: FK506 binding	1.96E-02
95	GO:0016746: transferase activity, transferring acyl groups	2.89E-02
96	GO:0004402: histone acetyltransferase activity	3.04E-02
97	GO:0003824: catalytic activity	3.17E-02
98	GO:0004527: exonuclease activity	3.20E-02
99	GO:0046873: metal ion transmembrane transporter activity	3.20E-02
100	GO:0050662: coenzyme binding	3.37E-02
101	GO:0004872: receptor activity	3.55E-02
102	GO:0016491: oxidoreductase activity	4.28E-02
103	GO:0015250: water channel activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	2.75E-20
4	GO:0045271: respiratory chain complex I	6.81E-11
5	GO:0045273: respiratory chain complex II	1.67E-07
6	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.67E-07
7	GO:0031966: mitochondrial membrane	2.90E-07
8	GO:0005773: vacuole	3.42E-07
9	GO:0005829: cytosol	4.50E-06
10	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	8.29E-05
11	GO:0033179: proton-transporting V-type ATPase, V0 domain	8.29E-05
12	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.23E-04
13	GO:0008250: oligosaccharyltransferase complex	1.30E-04
14	GO:0009507: chloroplast	3.46E-04
15	GO:0005783: endoplasmic reticulum	7.69E-04
16	GO:0005697: telomerase holoenzyme complex	8.00E-04
17	GO:0005739: mitochondrion	8.43E-04
18	GO:0005789: endoplasmic reticulum membrane	9.51E-04
19	GO:0005751: mitochondrial respiratory chain complex IV	1.29E-03
20	GO:0005838: proteasome regulatory particle	1.29E-03
21	GO:0005764: lysosome	1.38E-03
22	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.87E-03
23	GO:0033588: Elongator holoenzyme complex	1.87E-03
24	GO:0005849: mRNA cleavage factor complex	1.87E-03
25	GO:0000323: lytic vacuole	1.87E-03
26	GO:0005719: nuclear euchromatin	1.87E-03
27	GO:0005758: mitochondrial intermembrane space	1.91E-03
28	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.51E-03
29	GO:0005774: vacuolar membrane	3.10E-03
30	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	3.21E-03
31	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.96E-03
32	GO:0005771: multivesicular body	3.96E-03
33	GO:0030904: retromer complex	3.96E-03
34	GO:0031463: Cul3-RING ubiquitin ligase complex	3.96E-03
35	GO:0031209: SCAR complex	3.96E-03
36	GO:0016020: membrane	4.42E-03
37	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.64E-03
38	GO:0000421: autophagosome membrane	6.56E-03
39	GO:0005788: endoplasmic reticulum lumen	7.19E-03
40	GO:0005763: mitochondrial small ribosomal subunit	8.54E-03
41	GO:0005736: DNA-directed RNA polymerase I complex	8.54E-03
42	GO:0008180: COP9 signalosome	8.54E-03
43	GO:0005666: DNA-directed RNA polymerase III complex	9.60E-03
44	GO:0005777: peroxisome	1.03E-02
45	GO:0000325: plant-type vacuole	1.03E-02
46	GO:0005740: mitochondrial envelope	1.07E-02
47	GO:0005765: lysosomal membrane	1.19E-02
48	GO:0005615: extracellular space	1.26E-02
49	GO:0005665: DNA-directed RNA polymerase II, core complex	1.31E-02
50	GO:0009536: plastid	1.40E-02
51	GO:0009508: plastid chromosome	1.43E-02
52	GO:0005750: mitochondrial respiratory chain complex III	1.56E-02
53	GO:0000419: DNA-directed RNA polymerase V complex	1.82E-02
54	GO:0070469: respiratory chain	2.11E-02
55	GO:0031410: cytoplasmic vesicle	2.40E-02
56	GO:0005730: nucleolus	2.57E-02
57	GO:0009523: photosystem II	3.55E-02
58	GO:0071944: cell periphery	4.08E-02
59	GO:0032580: Golgi cisterna membrane	4.27E-02
60	GO:0005759: mitochondrial matrix	4.40E-02
61	GO:0009295: nucleoid	4.45E-02