GO Enrichment Analysis of Co-expressed Genes with
AT5G52960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0048564: photosystem I assembly | 2.62E-05 |
| 3 | GO:0042371: vitamin K biosynthetic process | 6.10E-05 |
| 4 | GO:0043686: co-translational protein modification | 6.10E-05 |
| 5 | GO:1902458: positive regulation of stomatal opening | 6.10E-05 |
| 6 | GO:0009767: photosynthetic electron transport chain | 9.94E-05 |
| 7 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.48E-04 |
| 8 | GO:0007017: microtubule-based process | 1.82E-04 |
| 9 | GO:0090307: mitotic spindle assembly | 3.65E-04 |
| 10 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 3.65E-04 |
| 11 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.65E-04 |
| 12 | GO:0006221: pyrimidine nucleotide biosynthetic process | 4.88E-04 |
| 13 | GO:0031122: cytoplasmic microtubule organization | 4.88E-04 |
| 14 | GO:0016558: protein import into peroxisome matrix | 6.19E-04 |
| 15 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.19E-04 |
| 16 | GO:0031365: N-terminal protein amino acid modification | 6.19E-04 |
| 17 | GO:0010190: cytochrome b6f complex assembly | 7.57E-04 |
| 18 | GO:0009643: photosynthetic acclimation | 7.57E-04 |
| 19 | GO:1901259: chloroplast rRNA processing | 9.01E-04 |
| 20 | GO:0017148: negative regulation of translation | 9.01E-04 |
| 21 | GO:0010189: vitamin E biosynthetic process | 9.01E-04 |
| 22 | GO:0009772: photosynthetic electron transport in photosystem II | 1.05E-03 |
| 23 | GO:0042255: ribosome assembly | 1.21E-03 |
| 24 | GO:0006353: DNA-templated transcription, termination | 1.21E-03 |
| 25 | GO:2000070: regulation of response to water deprivation | 1.21E-03 |
| 26 | GO:0000373: Group II intron splicing | 1.55E-03 |
| 27 | GO:0006949: syncytium formation | 1.92E-03 |
| 28 | GO:0009773: photosynthetic electron transport in photosystem I | 2.12E-03 |
| 29 | GO:0045037: protein import into chloroplast stroma | 2.32E-03 |
| 30 | GO:0009725: response to hormone | 2.52E-03 |
| 31 | GO:0006863: purine nucleobase transport | 3.18E-03 |
| 32 | GO:0009863: salicylic acid mediated signaling pathway | 3.42E-03 |
| 33 | GO:0080147: root hair cell development | 3.42E-03 |
| 34 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.40E-03 |
| 35 | GO:0009306: protein secretion | 4.65E-03 |
| 36 | GO:0008033: tRNA processing | 5.19E-03 |
| 37 | GO:0048868: pollen tube development | 5.46E-03 |
| 38 | GO:0015986: ATP synthesis coupled proton transport | 5.74E-03 |
| 39 | GO:0008654: phospholipid biosynthetic process | 6.03E-03 |
| 40 | GO:0009658: chloroplast organization | 6.06E-03 |
| 41 | GO:0010193: response to ozone | 6.32E-03 |
| 42 | GO:0006635: fatty acid beta-oxidation | 6.32E-03 |
| 43 | GO:0032502: developmental process | 6.61E-03 |
| 44 | GO:0009828: plant-type cell wall loosening | 7.21E-03 |
| 45 | GO:0009817: defense response to fungus, incompatible interaction | 9.82E-03 |
| 46 | GO:0007568: aging | 1.09E-02 |
| 47 | GO:0006810: transport | 1.39E-02 |
| 48 | GO:0009744: response to sucrose | 1.39E-02 |
| 49 | GO:0009664: plant-type cell wall organization | 1.63E-02 |
| 50 | GO:0010224: response to UV-B | 1.76E-02 |
| 51 | GO:0009555: pollen development | 1.98E-02 |
| 52 | GO:0009553: embryo sac development | 2.15E-02 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 2.46E-02 |
| 54 | GO:0009790: embryo development | 2.88E-02 |
| 55 | GO:0009451: RNA modification | 3.30E-02 |
| 56 | GO:0008380: RNA splicing | 3.68E-02 |
| 57 | GO:0009826: unidimensional cell growth | 4.31E-02 |
| 58 | GO:0055114: oxidation-reduction process | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 2 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0047911: galacturan 1,4-alpha-galacturonidase activity | 6.10E-05 |
| 5 | GO:0042586: peptide deformylase activity | 6.10E-05 |
| 6 | GO:0004451: isocitrate lyase activity | 6.10E-05 |
| 7 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.48E-04 |
| 8 | GO:0009041: uridylate kinase activity | 3.65E-04 |
| 9 | GO:0043023: ribosomal large subunit binding | 3.65E-04 |
| 10 | GO:0048038: quinone binding | 4.14E-04 |
| 11 | GO:0043015: gamma-tubulin binding | 4.88E-04 |
| 12 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.88E-04 |
| 13 | GO:0016491: oxidoreductase activity | 5.37E-04 |
| 14 | GO:0051011: microtubule minus-end binding | 6.19E-04 |
| 15 | GO:0042578: phosphoric ester hydrolase activity | 7.57E-04 |
| 16 | GO:0004605: phosphatidate cytidylyltransferase activity | 7.57E-04 |
| 17 | GO:0015631: tubulin binding | 9.01E-04 |
| 18 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.12E-03 |
| 19 | GO:0019843: rRNA binding | 2.86E-03 |
| 20 | GO:0005345: purine nucleobase transmembrane transporter activity | 3.65E-03 |
| 21 | GO:0003727: single-stranded RNA binding | 4.65E-03 |
| 22 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 5.46E-03 |
| 23 | GO:0004872: receptor activity | 6.03E-03 |
| 24 | GO:0005200: structural constituent of cytoskeleton | 7.52E-03 |
| 25 | GO:0009055: electron carrier activity | 1.19E-02 |
| 26 | GO:0003723: RNA binding | 1.20E-02 |
| 27 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.47E-02 |
| 28 | GO:0003690: double-stranded DNA binding | 1.76E-02 |
| 29 | GO:0003777: microtubule motor activity | 1.84E-02 |
| 30 | GO:0004650: polygalacturonase activity | 2.06E-02 |
| 31 | GO:0016740: transferase activity | 2.41E-02 |
| 32 | GO:0008565: protein transporter activity | 2.94E-02 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.38E-21 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 7.96E-12 |
| 3 | GO:0030286: dynein complex | 3.86E-06 |
| 4 | GO:0009570: chloroplast stroma | 3.39E-05 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.19E-05 |
| 6 | GO:0009941: chloroplast envelope | 6.78E-05 |
| 7 | GO:0030095: chloroplast photosystem II | 1.14E-04 |
| 8 | GO:0009579: thylakoid | 1.16E-04 |
| 9 | GO:0008274: gamma-tubulin ring complex | 1.48E-04 |
| 10 | GO:0009706: chloroplast inner membrane | 2.26E-04 |
| 11 | GO:0033281: TAT protein transport complex | 2.51E-04 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 3.05E-04 |
| 13 | GO:0000923: equatorial microtubule organizing center | 3.65E-04 |
| 14 | GO:0042646: plastid nucleoid | 3.65E-04 |
| 15 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 7.57E-04 |
| 16 | GO:0009534: chloroplast thylakoid | 7.89E-04 |
| 17 | GO:0031977: thylakoid lumen | 1.13E-03 |
| 18 | GO:0042644: chloroplast nucleoid | 1.55E-03 |
| 19 | GO:0000922: spindle pole | 1.55E-03 |
| 20 | GO:0000311: plastid large ribosomal subunit | 2.32E-03 |
| 21 | GO:0009508: plastid chromosome | 2.52E-03 |
| 22 | GO:0005875: microtubule associated complex | 3.18E-03 |
| 23 | GO:0042651: thylakoid membrane | 3.65E-03 |
| 24 | GO:0009654: photosystem II oxygen evolving complex | 3.65E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 6.03E-03 |
| 26 | GO:0009295: nucleoid | 7.52E-03 |
| 27 | GO:0005778: peroxisomal membrane | 7.52E-03 |
| 28 | GO:0010319: stromule | 7.52E-03 |
| 29 | GO:0015934: large ribosomal subunit | 1.09E-02 |
| 30 | GO:0009505: plant-type cell wall | 1.13E-02 |
| 31 | GO:0010287: plastoglobule | 2.49E-02 |
| 32 | GO:0005623: cell | 2.63E-02 |