Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G52840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032780: negative regulation of ATPase activity0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0016487: farnesol metabolic process0.00E+00
4GO:0009240: isopentenyl diphosphate biosynthetic process0.00E+00
5GO:0036172: thiamine salvage0.00E+00
6GO:0006721: terpenoid metabolic process0.00E+00
7GO:0009236: cobalamin biosynthetic process0.00E+00
8GO:0006720: isoprenoid metabolic process0.00E+00
9GO:0048870: cell motility0.00E+00
10GO:0018293: protein-FAD linkage0.00E+00
11GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
12GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
13GO:0070207: protein homotrimerization0.00E+00
14GO:0009853: photorespiration9.03E-10
15GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.32E-08
16GO:0006099: tricarboxylic acid cycle3.38E-08
17GO:0055114: oxidation-reduction process1.90E-06
18GO:0050992: dimethylallyl diphosphate biosynthetic process4.99E-06
19GO:0015992: proton transport8.40E-06
20GO:0015991: ATP hydrolysis coupled proton transport2.07E-05
21GO:0009963: positive regulation of flavonoid biosynthetic process3.91E-05
22GO:0006796: phosphate-containing compound metabolic process1.58E-04
23GO:0019354: siroheme biosynthetic process3.32E-04
24GO:0031539: positive regulation of anthocyanin metabolic process3.32E-04
25GO:0009852: auxin catabolic process3.32E-04
26GO:0031468: nuclear envelope reassembly3.32E-04
27GO:0048438: floral whorl development3.32E-04
28GO:0000066: mitochondrial ornithine transport3.32E-04
29GO:0009787: regulation of abscisic acid-activated signaling pathway3.52E-04
30GO:0000103: sulfate assimilation7.14E-04
31GO:0007163: establishment or maintenance of cell polarity7.24E-04
32GO:0080026: response to indolebutyric acid7.24E-04
33GO:0006432: phenylalanyl-tRNA aminoacylation7.24E-04
34GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation7.24E-04
35GO:2000071: regulation of defense response by callose deposition7.24E-04
36GO:0010220: positive regulation of vernalization response7.24E-04
37GO:0019441: tryptophan catabolic process to kynurenine7.24E-04
38GO:0006108: malate metabolic process1.06E-03
39GO:0006006: glucose metabolic process1.06E-03
40GO:0015940: pantothenate biosynthetic process1.17E-03
41GO:0071492: cellular response to UV-A1.17E-03
42GO:0045793: positive regulation of cell size1.17E-03
43GO:0006760: folic acid-containing compound metabolic process1.17E-03
44GO:2000377: regulation of reactive oxygen species metabolic process1.65E-03
45GO:0006107: oxaloacetate metabolic process1.68E-03
46GO:0009647: skotomorphogenesis1.68E-03
47GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.68E-03
48GO:0009399: nitrogen fixation1.68E-03
49GO:1901332: negative regulation of lateral root development1.68E-03
50GO:0080024: indolebutyric acid metabolic process1.68E-03
51GO:0032877: positive regulation of DNA endoreduplication1.68E-03
52GO:0008299: isoprenoid biosynthetic process1.82E-03
53GO:0009765: photosynthesis, light harvesting2.26E-03
54GO:0006221: pyrimidine nucleotide biosynthetic process2.26E-03
55GO:0009649: entrainment of circadian clock2.26E-03
56GO:0032366: intracellular sterol transport2.26E-03
57GO:0044205: 'de novo' UMP biosynthetic process2.26E-03
58GO:0006542: glutamine biosynthetic process2.26E-03
59GO:0070534: protein K63-linked ubiquitination2.26E-03
60GO:0071486: cellular response to high light intensity2.26E-03
61GO:0051781: positive regulation of cell division2.26E-03
62GO:0006012: galactose metabolic process2.38E-03
63GO:0030041: actin filament polymerization2.89E-03
64GO:0046283: anthocyanin-containing compound metabolic process2.89E-03
65GO:0009229: thiamine diphosphate biosynthetic process2.89E-03
66GO:0010224: response to UV-B2.98E-03
67GO:0080022: primary root development3.03E-03
68GO:0006662: glycerol ether metabolic process3.26E-03
69GO:0015986: ATP synthesis coupled proton transport3.51E-03
70GO:0006555: methionine metabolic process3.57E-03
71GO:0070814: hydrogen sulfide biosynthetic process3.57E-03
72GO:0007035: vacuolar acidification3.57E-03
73GO:0009228: thiamine biosynthetic process3.57E-03
74GO:0009117: nucleotide metabolic process3.57E-03
75GO:0000060: protein import into nucleus, translocation3.57E-03
76GO:0006121: mitochondrial electron transport, succinate to ubiquinone3.57E-03
77GO:0006301: postreplication repair3.57E-03
78GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.03E-03
79GO:0019509: L-methionine salvage from methylthioadenosine4.30E-03
80GO:0010076: maintenance of floral meristem identity4.30E-03
81GO:0010077: maintenance of inflorescence meristem identity4.30E-03
82GO:0010090: trichome morphogenesis4.59E-03
83GO:0009651: response to salt stress4.81E-03
84GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.07E-03
85GO:0009396: folic acid-containing compound biosynthetic process5.07E-03
86GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.07E-03
87GO:0010161: red light signaling pathway5.07E-03
88GO:0006506: GPI anchor biosynthetic process5.89E-03
89GO:0000028: ribosomal small subunit assembly5.89E-03
90GO:0045010: actin nucleation5.89E-03
91GO:0048658: anther wall tapetum development5.89E-03
92GO:0009231: riboflavin biosynthetic process5.89E-03
93GO:0022900: electron transport chain6.76E-03
94GO:0010099: regulation of photomorphogenesis6.76E-03
95GO:0015995: chlorophyll biosynthetic process6.87E-03
96GO:0006979: response to oxidative stress7.08E-03
97GO:0046685: response to arsenic-containing substance7.67E-03
98GO:0009245: lipid A biosynthetic process7.67E-03
99GO:0080144: amino acid homeostasis7.67E-03
100GO:0006754: ATP biosynthetic process7.67E-03
101GO:0000902: cell morphogenesis7.67E-03
102GO:0035999: tetrahydrofolate interconversion8.61E-03
103GO:0009970: cellular response to sulfate starvation9.61E-03
104GO:0009641: shade avoidance9.61E-03
105GO:0034599: cellular response to oxidative stress1.01E-02
106GO:0009682: induced systemic resistance1.06E-02
107GO:0052544: defense response by callose deposition in cell wall1.06E-02
108GO:0018119: peptidyl-cysteine S-nitrosylation1.06E-02
109GO:0010582: floral meristem determinacy1.17E-02
110GO:0016925: protein sumoylation1.17E-02
111GO:0009640: photomorphogenesis1.25E-02
112GO:0006829: zinc II ion transport1.28E-02
113GO:0009785: blue light signaling pathway1.28E-02
114GO:0006807: nitrogen compound metabolic process1.28E-02
115GO:0009691: cytokinin biosynthetic process1.28E-02
116GO:0006094: gluconeogenesis1.28E-02
117GO:0048440: carpel development1.40E-02
118GO:0007030: Golgi organization1.51E-02
119GO:0009901: anther dehiscence1.51E-02
120GO:0019853: L-ascorbic acid biosynthetic process1.51E-02
121GO:0010039: response to iron ion1.51E-02
122GO:0042753: positive regulation of circadian rhythm1.63E-02
123GO:0006071: glycerol metabolic process1.63E-02
124GO:0009585: red, far-red light phototransduction1.69E-02
125GO:0006487: protein N-linked glycosylation1.76E-02
126GO:0009735: response to cytokinin1.85E-02
127GO:0006096: glycolytic process2.00E-02
128GO:0019915: lipid storage2.02E-02
129GO:0061077: chaperone-mediated protein folding2.02E-02
130GO:0010431: seed maturation2.02E-02
131GO:0010017: red or far-red light signaling pathway2.15E-02
132GO:0016226: iron-sulfur cluster assembly2.15E-02
133GO:2000022: regulation of jasmonic acid mediated signaling pathway2.15E-02
134GO:0045454: cell redox homeostasis2.58E-02
135GO:0010118: stomatal movement2.72E-02
136GO:0009958: positive gravitropism2.87E-02
137GO:0006520: cellular amino acid metabolic process2.87E-02
138GO:0009737: response to abscisic acid2.96E-02
139GO:0061025: membrane fusion3.02E-02
140GO:0008654: phospholipid biosynthetic process3.18E-02
141GO:0016042: lipid catabolic process3.23E-02
142GO:0002229: defense response to oomycetes3.33E-02
143GO:0006281: DNA repair3.34E-02
144GO:0008152: metabolic process3.77E-02
145GO:0010252: auxin homeostasis3.82E-02
146GO:0010286: heat acclimation3.99E-02
147GO:0000910: cytokinesis4.16E-02
148GO:0005975: carbohydrate metabolic process4.19E-02
149GO:0016126: sterol biosynthetic process4.33E-02
150GO:0046686: response to cadmium ion4.37E-02
151GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.51E-02
152GO:0042128: nitrate assimilation4.68E-02
153GO:0006888: ER to Golgi vesicle-mediated transport4.86E-02
154GO:0048573: photoperiodism, flowering4.86E-02
RankGO TermAdjusted P value
1GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
2GO:0050152: omega-amidase activity0.00E+00
3GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
4GO:0052671: geranylgeraniol kinase activity0.00E+00
5GO:0004452: isopentenyl-diphosphate delta-isomerase activity0.00E+00
6GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
7GO:0004746: riboflavin synthase activity0.00E+00
8GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
9GO:0004151: dihydroorotase activity0.00E+00
10GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
11GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
12GO:0047886: farnesol dehydrogenase activity0.00E+00
13GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
14GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
15GO:0042030: ATPase inhibitor activity0.00E+00
16GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
17GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
18GO:0052670: geraniol kinase activity0.00E+00
19GO:0052668: farnesol kinase activity0.00E+00
20GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
21GO:0008137: NADH dehydrogenase (ubiquinone) activity1.56E-06
22GO:0008106: alcohol dehydrogenase (NADP+) activity3.91E-05
23GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity3.91E-05
24GO:0050897: cobalt ion binding1.60E-04
25GO:0004427: inorganic diphosphatase activity2.80E-04
26GO:0008121: ubiquinol-cytochrome-c reductase activity2.80E-04
27GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity3.32E-04
28GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity3.32E-04
29GO:0080047: GDP-L-galactose phosphorylase activity3.32E-04
30GO:0019707: protein-cysteine S-acyltransferase activity3.32E-04
31GO:0030611: arsenate reductase activity3.32E-04
32GO:0080048: GDP-D-glucose phosphorylase activity3.32E-04
33GO:0004034: aldose 1-epimerase activity3.52E-04
34GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.57E-04
35GO:0015078: hydrogen ion transmembrane transporter activity4.31E-04
36GO:0000064: L-ornithine transmembrane transporter activity7.24E-04
37GO:0004826: phenylalanine-tRNA ligase activity7.24E-04
38GO:0004061: arylformamidase activity7.24E-04
39GO:0004129: cytochrome-c oxidase activity8.23E-04
40GO:0046961: proton-transporting ATPase activity, rotational mechanism8.23E-04
41GO:0008794: arsenate reductase (glutaredoxin) activity8.23E-04
42GO:0005507: copper ion binding1.03E-03
43GO:0004089: carbonate dehydratase activity1.06E-03
44GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.17E-03
45GO:0004557: alpha-galactosidase activity1.17E-03
46GO:0032403: protein complex binding1.17E-03
47GO:0004781: sulfate adenylyltransferase (ATP) activity1.17E-03
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.17E-03
49GO:0052692: raffinose alpha-galactosidase activity1.17E-03
50GO:0016491: oxidoreductase activity1.33E-03
51GO:0051536: iron-sulfur cluster binding1.65E-03
52GO:0000254: C-4 methylsterol oxidase activity1.68E-03
53GO:0035529: NADH pyrophosphatase activity1.68E-03
54GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.26E-03
55GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.26E-03
56GO:0050302: indole-3-acetaldehyde oxidase activity2.26E-03
57GO:0004576: oligosaccharyl transferase activity2.26E-03
58GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.26E-03
59GO:0010011: auxin binding2.26E-03
60GO:0042802: identical protein binding2.63E-03
61GO:0047134: protein-disulfide reductase activity2.80E-03
62GO:0008177: succinate dehydrogenase (ubiquinone) activity2.89E-03
63GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.89E-03
64GO:0005496: steroid binding2.89E-03
65GO:0031386: protein tag2.89E-03
66GO:0004356: glutamate-ammonia ligase activity2.89E-03
67GO:0016853: isomerase activity3.51E-03
68GO:0004791: thioredoxin-disulfide reductase activity3.51E-03
69GO:0031177: phosphopantetheine binding3.57E-03
70GO:0051117: ATPase binding3.57E-03
71GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.57E-03
72GO:0016462: pyrophosphatase activity3.57E-03
73GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.57E-03
74GO:0080046: quercetin 4'-O-glucosyltransferase activity3.57E-03
75GO:0004605: phosphatidate cytidylyltransferase activity3.57E-03
76GO:0003735: structural constituent of ribosome3.58E-03
77GO:0016788: hydrolase activity, acting on ester bonds3.66E-03
78GO:0000035: acyl binding4.30E-03
79GO:0030060: L-malate dehydrogenase activity4.30E-03
80GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.59E-03
81GO:0015035: protein disulfide oxidoreductase activity4.64E-03
82GO:0042162: telomeric DNA binding5.07E-03
83GO:0008143: poly(A) binding5.07E-03
84GO:0008320: protein transmembrane transporter activity5.07E-03
85GO:0005085: guanyl-nucleotide exchange factor activity5.07E-03
86GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.89E-03
87GO:0008889: glycerophosphodiester phosphodiesterase activity7.67E-03
88GO:0003824: catalytic activity8.36E-03
89GO:0001055: RNA polymerase II activity8.61E-03
90GO:0047617: acyl-CoA hydrolase activity8.61E-03
91GO:0001054: RNA polymerase I activity1.06E-02
92GO:0051539: 4 iron, 4 sulfur cluster binding1.10E-02
93GO:0050661: NADP binding1.10E-02
94GO:0016787: hydrolase activity1.15E-02
95GO:0001056: RNA polymerase III activity1.17E-02
96GO:0000049: tRNA binding1.17E-02
97GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.46E-02
98GO:0051287: NAD binding1.51E-02
99GO:0004725: protein tyrosine phosphatase activity1.63E-02
100GO:0016298: lipase activity1.75E-02
101GO:0043130: ubiquitin binding1.76E-02
102GO:0005528: FK506 binding1.76E-02
103GO:0004298: threonine-type endopeptidase activity2.02E-02
104GO:0022857: transmembrane transporter activity2.26E-02
105GO:0052689: carboxylic ester hydrolase activity2.33E-02
106GO:0016746: transferase activity, transferring acyl groups2.48E-02
107GO:0046873: metal ion transmembrane transporter activity2.87E-02
108GO:0050662: coenzyme binding3.02E-02
109GO:0004872: receptor activity3.18E-02
110GO:0048038: quinone binding3.33E-02
111GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.43E-02
112GO:0016597: amino acid binding4.16E-02
113GO:0051213: dioxygenase activity4.33E-02
114GO:0016168: chlorophyll binding4.51E-02
115GO:0008375: acetylglucosaminyltransferase activity4.68E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0005747: mitochondrial respiratory chain complex I8.07E-21
3GO:0045271: respiratory chain complex I3.87E-11
4GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)8.49E-10
5GO:0045273: respiratory chain complex II8.49E-10
6GO:0031966: mitochondrial membrane1.69E-07
7GO:0005739: mitochondrion4.17E-07
8GO:0009507: chloroplast1.36E-06
9GO:0005829: cytosol2.61E-06
10GO:0005773: vacuole2.72E-06
11GO:0005753: mitochondrial proton-transporting ATP synthase complex3.35E-06
12GO:0033179: proton-transporting V-type ATPase, V0 domain6.97E-05
13GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)6.97E-05
14GO:0005750: mitochondrial respiratory chain complex III8.27E-05
15GO:0005746: mitochondrial respiratory chain1.10E-04
16GO:0000152: nuclear ubiquitin ligase complex3.32E-04
17GO:0009536: plastid3.51E-04
18GO:0022626: cytosolic ribosome4.25E-04
19GO:0005697: telomerase holoenzyme complex7.24E-04
20GO:0005774: vacuolar membrane7.67E-04
21GO:0005838: proteasome regulatory particle1.17E-03
22GO:0005758: mitochondrial intermembrane space1.65E-03
23GO:0033180: proton-transporting V-type ATPase, V1 domain1.68E-03
24GO:0070469: respiratory chain1.82E-03
25GO:0031372: UBC13-MMS2 complex2.26E-03
26GO:0016471: vacuolar proton-transporting V-type ATPase complex2.26E-03
27GO:0008250: oligosaccharyltransferase complex2.89E-03
28GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain2.89E-03
29GO:0031209: SCAR complex3.57E-03
30GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.57E-03
31GO:0032588: trans-Golgi network membrane3.57E-03
32GO:0016020: membrane3.91E-03
33GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.07E-03
34GO:0009501: amyloplast5.89E-03
35GO:0005783: endoplasmic reticulum5.92E-03
36GO:0005788: endoplasmic reticulum lumen6.16E-03
37GO:0005840: ribosome7.64E-03
38GO:0005736: DNA-directed RNA polymerase I complex7.67E-03
39GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.67E-03
40GO:0005763: mitochondrial small ribosomal subunit7.67E-03
41GO:0005759: mitochondrial matrix7.96E-03
42GO:0016604: nuclear body8.61E-03
43GO:0005666: DNA-directed RNA polymerase III complex8.61E-03
44GO:0005665: DNA-directed RNA polymerase II, core complex1.17E-02
45GO:0009508: plastid chromosome1.28E-02
46GO:0022627: cytosolic small ribosomal subunit1.28E-02
47GO:0005764: lysosome1.40E-02
48GO:0005789: endoplasmic reticulum membrane1.58E-02
49GO:0000419: DNA-directed RNA polymerase V complex1.63E-02
50GO:0005730: nucleolus1.92E-02
51GO:0005839: proteasome core complex2.02E-02
52GO:0031969: chloroplast membrane2.05E-02
53GO:0016607: nuclear speck2.06E-02
54GO:0005777: peroxisome2.60E-02
55GO:0009523: photosystem II3.18E-02
56GO:0005737: cytoplasm3.42E-02
57GO:0071944: cell periphery3.66E-02
58GO:0032580: Golgi cisterna membrane3.82E-02
59GO:0009295: nucleoid3.99E-02
60GO:0010319: stromule3.99E-02
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Gene type



Gene DE type