co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G52780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0046294: formaldehyde catabolic process	0.00E+00
5	GO:0009106: lipoate metabolic process	0.00E+00
6	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
7	GO:0071000: response to magnetism	0.00E+00
8	GO:0046460: neutral lipid biosynthetic process	0.00E+00
9	GO:0032928: regulation of superoxide anion generation	0.00E+00
10	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
11	GO:0006907: pinocytosis	0.00E+00
12	GO:0009946: proximal/distal axis specification	0.00E+00
13	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.29E-06
14	GO:0010117: photoprotection	7.68E-05
15	GO:0048438: floral whorl development	2.68E-04
16	GO:0034970: histone H3-R2 methylation	2.68E-04
17	GO:0034972: histone H3-R26 methylation	2.68E-04
18	GO:1902265: abscisic acid homeostasis	2.68E-04
19	GO:0034971: histone H3-R17 methylation	2.68E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	2.68E-04
21	GO:0071454: cellular response to anoxia	2.68E-04
22	GO:0022900: electron transport chain	3.14E-04
23	GO:0009658: chloroplast organization	4.45E-04
24	GO:0009098: leucine biosynthetic process	4.50E-04
25	GO:0016122: xanthophyll metabolic process	5.89E-04
26	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.89E-04
27	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.89E-04
28	GO:0010343: singlet oxygen-mediated programmed cell death	5.89E-04
29	GO:1901529: positive regulation of anion channel activity	5.89E-04
30	GO:0048255: mRNA stabilization	5.89E-04
31	GO:0010617: circadian regulation of calcium ion oscillation	5.89E-04
32	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.89E-04
33	GO:0099402: plant organ development	5.89E-04
34	GO:0045037: protein import into chloroplast stroma	6.94E-04
35	GO:0019253: reductive pentose-phosphate cycle	8.84E-04
36	GO:0009637: response to blue light	9.53E-04
37	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	9.55E-04
38	GO:0010338: leaf formation	9.55E-04
39	GO:0031022: nuclear migration along microfilament	9.55E-04
40	GO:1902448: positive regulation of shade avoidance	9.55E-04
41	GO:1901672: positive regulation of systemic acquired resistance	9.55E-04
42	GO:0009150: purine ribonucleotide metabolic process	9.55E-04
43	GO:0071492: cellular response to UV-A	9.55E-04
44	GO:0009451: RNA modification	1.17E-03
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.36E-03
46	GO:1902476: chloride transmembrane transport	1.36E-03
47	GO:0090307: mitotic spindle assembly	1.36E-03
48	GO:0033014: tetrapyrrole biosynthetic process	1.36E-03
49	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.36E-03
50	GO:1901332: negative regulation of lateral root development	1.36E-03
51	GO:0071486: cellular response to high light intensity	1.83E-03
52	GO:0009765: photosynthesis, light harvesting	1.83E-03
53	GO:0045088: regulation of innate immune response	1.83E-03
54	GO:0031122: cytoplasmic microtubule organization	1.83E-03
55	GO:1902347: response to strigolactone	1.83E-03
56	GO:0009902: chloroplast relocation	1.83E-03
57	GO:0034613: cellular protein localization	1.83E-03
58	GO:0009107: lipoate biosynthetic process	2.33E-03
59	GO:0016123: xanthophyll biosynthetic process	2.33E-03
60	GO:0010438: cellular response to sulfur starvation	2.33E-03
61	GO:0010375: stomatal complex patterning	2.33E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	2.33E-03
63	GO:0009958: positive gravitropism	2.39E-03
64	GO:0010197: polar nucleus fusion	2.39E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.88E-03
66	GO:0016070: RNA metabolic process	2.88E-03
67	GO:0031053: primary miRNA processing	2.88E-03
68	GO:1901371: regulation of leaf morphogenesis	2.88E-03
69	GO:0060918: auxin transport	2.88E-03
70	GO:0000741: karyogamy	2.88E-03
71	GO:0006796: phosphate-containing compound metabolic process	2.88E-03
72	GO:0042793: transcription from plastid promoter	2.88E-03
73	GO:0010310: regulation of hydrogen peroxide metabolic process	3.46E-03
74	GO:0015977: carbon fixation	3.46E-03
75	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.46E-03
76	GO:0034389: lipid particle organization	3.46E-03
77	GO:0010076: maintenance of floral meristem identity	3.46E-03
78	GO:0017148: negative regulation of translation	3.46E-03
79	GO:0009903: chloroplast avoidance movement	3.46E-03
80	GO:0010019: chloroplast-nucleus signaling pathway	3.46E-03
81	GO:1900056: negative regulation of leaf senescence	4.08E-03
82	GO:0006821: chloride transport	4.08E-03
83	GO:0051510: regulation of unidimensional cell growth	4.08E-03
84	GO:0016126: sterol biosynthetic process	4.25E-03
85	GO:0048564: photosystem I assembly	4.73E-03
86	GO:0045292: mRNA cis splicing, via spliceosome	4.73E-03
87	GO:0010928: regulation of auxin mediated signaling pathway	4.73E-03
88	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.73E-03
89	GO:0010439: regulation of glucosinolate biosynthetic process	4.73E-03
90	GO:0042255: ribosome assembly	4.73E-03
91	GO:0006353: DNA-templated transcription, termination	4.73E-03
92	GO:0009704: de-etiolation	4.73E-03
93	GO:0019430: removal of superoxide radicals	5.42E-03
94	GO:0010100: negative regulation of photomorphogenesis	5.42E-03
95	GO:0032544: plastid translation	5.42E-03
96	GO:0010218: response to far red light	6.11E-03
97	GO:0015780: nucleotide-sugar transport	6.14E-03
98	GO:0019432: triglyceride biosynthetic process	6.14E-03
99	GO:0046916: cellular transition metal ion homeostasis	6.14E-03
100	GO:0006783: heme biosynthetic process	6.14E-03
101	GO:0009910: negative regulation of flower development	6.40E-03
102	GO:1900426: positive regulation of defense response to bacterium	6.90E-03
103	GO:0009638: phototropism	6.90E-03
104	GO:0006779: porphyrin-containing compound biosynthetic process	6.90E-03
105	GO:1900865: chloroplast RNA modification	6.90E-03
106	GO:0010380: regulation of chlorophyll biosynthetic process	6.90E-03
107	GO:0008356: asymmetric cell division	6.90E-03
108	GO:0009688: abscisic acid biosynthetic process	7.68E-03
109	GO:0030422: production of siRNA involved in RNA interference	7.68E-03
110	GO:0045036: protein targeting to chloroplast	7.68E-03
111	GO:0009682: induced systemic resistance	8.50E-03
112	GO:0043085: positive regulation of catalytic activity	8.50E-03
113	GO:0009744: response to sucrose	9.06E-03
114	GO:0010114: response to red light	9.06E-03
115	GO:0006790: sulfur compound metabolic process	9.35E-03
116	GO:0010582: floral meristem determinacy	9.35E-03
117	GO:0010075: regulation of meristem growth	1.02E-02
118	GO:0009725: response to hormone	1.02E-02
119	GO:0009767: photosynthetic electron transport chain	1.02E-02
120	GO:0009785: blue light signaling pathway	1.02E-02
121	GO:0030048: actin filament-based movement	1.02E-02
122	GO:0009266: response to temperature stimulus	1.11E-02
123	GO:0034605: cellular response to heat	1.11E-02
124	GO:0010207: photosystem II assembly	1.11E-02
125	GO:0006071: glycerol metabolic process	1.30E-02
126	GO:0000162: tryptophan biosynthetic process	1.30E-02
127	GO:0009944: polarity specification of adaxial/abaxial axis	1.40E-02
128	GO:0006289: nucleotide-excision repair	1.40E-02
129	GO:2000377: regulation of reactive oxygen species metabolic process	1.40E-02
130	GO:0010026: trichome differentiation	1.50E-02
131	GO:0007017: microtubule-based process	1.50E-02
132	GO:0019915: lipid storage	1.61E-02
133	GO:0006306: DNA methylation	1.61E-02
134	GO:0016226: iron-sulfur cluster assembly	1.71E-02
135	GO:0009625: response to insect	1.82E-02
136	GO:0070417: cellular response to cold	2.05E-02
137	GO:0032259: methylation	2.13E-02
138	GO:0010118: stomatal movement	2.17E-02
139	GO:0008033: tRNA processing	2.17E-02
140	GO:0009751: response to salicylic acid	2.21E-02
141	GO:0006810: transport	2.33E-02
142	GO:0042752: regulation of circadian rhythm	2.41E-02
143	GO:0009646: response to absence of light	2.41E-02
144	GO:0009851: auxin biosynthetic process	2.53E-02
145	GO:0032502: developmental process	2.78E-02
146	GO:0007264: small GTPase mediated signal transduction	2.78E-02
147	GO:0019761: glucosinolate biosynthetic process	2.78E-02
148	GO:0000910: cytokinesis	3.31E-02
149	GO:0009739: response to gibberellin	3.38E-02
150	GO:0009615: response to virus	3.45E-02
151	GO:0010029: regulation of seed germination	3.59E-02
152	GO:0055114: oxidation-reduction process	3.87E-02
153	GO:0015995: chlorophyll biosynthetic process	3.88E-02
154	GO:0018298: protein-chromophore linkage	4.17E-02
155	GO:0009416: response to light stimulus	4.57E-02
156	GO:0042254: ribosome biogenesis	4.74E-02
157	GO:0009853: photorespiration	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0004848: ureidoglycolate hydrolase activity	1.18E-05
5	GO:0046906: tetrapyrrole binding	2.68E-04
6	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.68E-04
7	GO:0004325: ferrochelatase activity	2.68E-04
8	GO:0048038: quinone binding	3.12E-04
9	GO:0071949: FAD binding	3.80E-04
10	GO:0016415: octanoyltransferase activity	5.89E-04
11	GO:0015929: hexosaminidase activity	5.89E-04
12	GO:0004563: beta-N-acetylhexosaminidase activity	5.89E-04
13	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.89E-04
14	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.89E-04
15	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.89E-04
16	GO:0017118: lipoyltransferase activity	5.89E-04
17	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.89E-04
18	GO:0080045: quercetin 3'-O-glucosyltransferase activity	5.89E-04
19	GO:0008469: histone-arginine N-methyltransferase activity	9.55E-04
20	GO:0008430: selenium binding	9.55E-04
21	GO:0004180: carboxypeptidase activity	9.55E-04
22	GO:0032947: protein complex scaffold	9.55E-04
23	GO:0019003: GDP binding	9.55E-04
24	GO:0003861: 3-isopropylmalate dehydratase activity	9.55E-04
25	GO:0000900: translation repressor activity, nucleic acid binding	9.55E-04
26	GO:0016984: ribulose-bisphosphate carboxylase activity	1.36E-03
27	GO:0000254: C-4 methylsterol oxidase activity	1.36E-03
28	GO:0016851: magnesium chelatase activity	1.36E-03
29	GO:0000339: RNA cap binding	1.36E-03
30	GO:0009882: blue light photoreceptor activity	1.36E-03
31	GO:0047627: adenylylsulfatase activity	1.36E-03
32	GO:0043023: ribosomal large subunit binding	1.36E-03
33	GO:0004834: tryptophan synthase activity	1.83E-03
34	GO:0016836: hydro-lyase activity	1.83E-03
35	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.83E-03
36	GO:0043015: gamma-tubulin binding	1.83E-03
37	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.83E-03
38	GO:0005253: anion channel activity	1.83E-03
39	GO:0016491: oxidoreductase activity	2.01E-03
40	GO:0008168: methyltransferase activity	2.07E-03
41	GO:0008374: O-acyltransferase activity	2.33E-03
42	GO:0051011: microtubule minus-end binding	2.33E-03
43	GO:0008080: N-acetyltransferase activity	2.39E-03
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.45E-03
45	GO:0005247: voltage-gated chloride channel activity	2.88E-03
46	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.88E-03
47	GO:0004784: superoxide dismutase activity	2.88E-03
48	GO:0004518: nuclease activity	3.14E-03
49	GO:0015631: tubulin binding	3.46E-03
50	GO:0004144: diacylglycerol O-acyltransferase activity	3.46E-03
51	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.08E-03
52	GO:0004427: inorganic diphosphatase activity	4.08E-03
53	GO:0019899: enzyme binding	4.08E-03
54	GO:0004525: ribonuclease III activity	4.73E-03
55	GO:0046914: transition metal ion binding	5.42E-03
56	GO:0004519: endonuclease activity	6.25E-03
57	GO:0001055: RNA polymerase II activity	6.90E-03
58	GO:0008194: UDP-glycosyltransferase activity	6.90E-03
59	GO:0004860: protein kinase inhibitor activity	8.50E-03
60	GO:0001054: RNA polymerase I activity	8.50E-03
61	GO:0001056: RNA polymerase III activity	9.35E-03
62	GO:0051537: 2 iron, 2 sulfur cluster binding	9.81E-03
63	GO:0031072: heat shock protein binding	1.02E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.11E-02
65	GO:0003690: double-stranded DNA binding	1.27E-02
66	GO:0003887: DNA-directed DNA polymerase activity	1.30E-02
67	GO:0051536: iron-sulfur cluster binding	1.40E-02
68	GO:0035251: UDP-glucosyltransferase activity	1.61E-02
69	GO:0004176: ATP-dependent peptidase activity	1.61E-02
70	GO:0022857: transmembrane transporter activity	1.64E-02
71	GO:0042803: protein homodimerization activity	1.83E-02
72	GO:0003727: single-stranded RNA binding	1.94E-02
73	GO:0019843: rRNA binding	2.19E-02
74	GO:0010181: FMN binding	2.41E-02
75	GO:0004872: receptor activity	2.53E-02
76	GO:0008565: protein transporter activity	2.62E-02
77	GO:0008237: metallopeptidase activity	3.18E-02
78	GO:0005200: structural constituent of cytoskeleton	3.18E-02
79	GO:0016168: chlorophyll binding	3.59E-02
80	GO:0005506: iron ion binding	3.65E-02
81	GO:0003723: RNA binding	3.87E-02
82	GO:0004806: triglyceride lipase activity	3.88E-02
83	GO:0008236: serine-type peptidase activity	4.02E-02
84	GO:0004222: metalloendopeptidase activity	4.47E-02
85	GO:0046982: protein heterodimerization activity	4.57E-02
86	GO:0000287: magnesium ion binding	4.57E-02
87	GO:0003746: translation elongation factor activity	4.93E-02
88	GO:0003697: single-stranded DNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	9.15E-18
3	GO:0009535: chloroplast thylakoid membrane	5.50E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.55E-07
5	GO:0009570: chloroplast stroma	9.26E-05
6	GO:0005845: mRNA cap binding complex	2.68E-04
7	GO:0008274: gamma-tubulin ring complex	5.89E-04
8	GO:0005846: nuclear cap binding complex	5.89E-04
9	GO:0005623: cell	7.25E-04
10	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	9.55E-04
11	GO:0016605: PML body	9.55E-04
12	GO:0009579: thylakoid	1.31E-03
13	GO:0000923: equatorial microtubule organizing center	1.36E-03
14	GO:0042646: plastid nucleoid	1.36E-03
15	GO:0009536: plastid	1.72E-03
16	GO:0030286: dynein complex	1.83E-03
17	GO:0009517: PSII associated light-harvesting complex II	1.83E-03
18	GO:0055035: plastid thylakoid membrane	2.33E-03
19	GO:0034707: chloride channel complex	2.88E-03
20	GO:0000793: condensed chromosome	2.88E-03
21	GO:0009706: chloroplast inner membrane	2.98E-03
22	GO:0031969: chloroplast membrane	3.04E-03
23	GO:0009840: chloroplastic endopeptidase Clp complex	3.46E-03
24	GO:0009295: nucleoid	3.78E-03
25	GO:0005811: lipid particle	5.42E-03
26	GO:0042644: chloroplast nucleoid	6.14E-03
27	GO:0000922: spindle pole	6.14E-03
28	GO:0016604: nuclear body	6.90E-03
29	GO:0005622: intracellular	9.65E-03
30	GO:0009508: plastid chromosome	1.02E-02
31	GO:0000419: DNA-directed RNA polymerase V complex	1.30E-02
32	GO:0043234: protein complex	1.30E-02
33	GO:0005875: microtubule associated complex	1.30E-02
34	GO:0042651: thylakoid membrane	1.50E-02
35	GO:0015935: small ribosomal subunit	1.61E-02
36	GO:0009534: chloroplast thylakoid	1.74E-02
37	GO:0009543: chloroplast thylakoid lumen	2.19E-02
38	GO:0009523: photosystem II	2.53E-02
39	GO:0019005: SCF ubiquitin ligase complex	4.17E-02