co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G52640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009560: embryo sac egg cell differentiation	0.00E+00
2	GO:0010245: radial microtubular system formation	0.00E+00
3	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
4	GO:0042353: fucose biosynthetic process	0.00E+00
5	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
6	GO:0009408: response to heat	4.58E-13
7	GO:0046686: response to cadmium ion	6.62E-08
8	GO:0006457: protein folding	3.12E-07
9	GO:0051131: chaperone-mediated protein complex assembly	3.65E-06
10	GO:0010286: heat acclimation	4.71E-05
11	GO:0009615: response to virus	5.64E-05
12	GO:0034620: cellular response to unfolded protein	8.61E-05
13	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	8.61E-05
14	GO:0071277: cellular response to calcium ion	8.61E-05
15	GO:0018920: glyphosate metabolic process	8.61E-05
16	GO:0090332: stomatal closure	8.63E-05
17	GO:0042542: response to hydrogen peroxide	1.62E-04
18	GO:0034605: cellular response to heat	1.86E-04
19	GO:0009644: response to high light intensity	1.92E-04
20	GO:0010155: regulation of proton transport	2.04E-04
21	GO:0006611: protein export from nucleus	2.04E-04
22	GO:0019521: D-gluconate metabolic process	2.04E-04
23	GO:0010372: positive regulation of gibberellin biosynthetic process	2.04E-04
24	GO:0009863: salicylic acid mediated signaling pathway	2.63E-04
25	GO:0010187: negative regulation of seed germination	2.63E-04
26	GO:0061077: chaperone-mediated protein folding	3.20E-04
27	GO:0051176: positive regulation of sulfur metabolic process	3.42E-04
28	GO:0006081: cellular aldehyde metabolic process	3.42E-04
29	GO:0000055: ribosomal large subunit export from nucleus	3.42E-04
30	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.42E-04
31	GO:0070475: rRNA base methylation	3.42E-04
32	GO:0009558: embryo sac cellularization	4.92E-04
33	GO:0006986: response to unfolded protein	4.92E-04
34	GO:0030100: regulation of endocytosis	4.92E-04
35	GO:0009399: nitrogen fixation	4.92E-04
36	GO:0033320: UDP-D-xylose biosynthetic process	6.55E-04
37	GO:0006536: glutamate metabolic process	6.55E-04
38	GO:0007112: male meiosis cytokinesis	6.55E-04
39	GO:0001709: cell fate determination	6.55E-04
40	GO:0006904: vesicle docking involved in exocytosis	8.18E-04
41	GO:0007029: endoplasmic reticulum organization	8.29E-04
42	GO:0009435: NAD biosynthetic process	8.29E-04
43	GO:0030041: actin filament polymerization	8.29E-04
44	GO:0001666: response to hypoxia	9.13E-04
45	GO:0009816: defense response to bacterium, incompatible interaction	9.62E-04
46	GO:0007166: cell surface receptor signaling pathway	9.66E-04
47	GO:0006014: D-ribose metabolic process	1.01E-03
48	GO:0010256: endomembrane system organization	1.01E-03
49	GO:0000470: maturation of LSU-rRNA	1.01E-03
50	GO:0042732: D-xylose metabolic process	1.01E-03
51	GO:0048317: seed morphogenesis	1.01E-03
52	GO:0006796: phosphate-containing compound metabolic process	1.01E-03
53	GO:0009423: chorismate biosynthetic process	1.20E-03
54	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.41E-03
55	GO:0070370: cellular heat acclimation	1.41E-03
56	GO:0016051: carbohydrate biosynthetic process	1.48E-03
57	GO:0050821: protein stabilization	1.63E-03
58	GO:0045010: actin nucleation	1.63E-03
59	GO:0048658: anther wall tapetum development	1.63E-03
60	GO:1900150: regulation of defense response to fungus	1.63E-03
61	GO:0006402: mRNA catabolic process	1.63E-03
62	GO:0006887: exocytosis	1.75E-03
63	GO:0030968: endoplasmic reticulum unfolded protein response	1.86E-03
64	GO:0010208: pollen wall assembly	1.86E-03
65	GO:0009060: aerobic respiration	2.10E-03
66	GO:0009051: pentose-phosphate shunt, oxidative branch	2.10E-03
67	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.10E-03
68	GO:0008202: steroid metabolic process	2.35E-03
69	GO:0048829: root cap development	2.61E-03
70	GO:0009750: response to fructose	2.87E-03
71	GO:0048229: gametophyte development	2.87E-03
72	GO:0010015: root morphogenesis	2.87E-03
73	GO:0009073: aromatic amino acid family biosynthetic process	2.87E-03
74	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.15E-03
75	GO:0009266: response to temperature stimulus	3.73E-03
76	GO:0009742: brassinosteroid mediated signaling pathway	3.81E-03
77	GO:0009969: xyloglucan biosynthetic process	4.03E-03
78	GO:0009225: nucleotide-sugar metabolic process	4.03E-03
79	GO:0009845: seed germination	4.85E-03
80	GO:0098542: defense response to other organism	5.32E-03
81	GO:0071456: cellular response to hypoxia	5.66E-03
82	GO:0016226: iron-sulfur cluster assembly	5.66E-03
83	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
84	GO:0071215: cellular response to abscisic acid stimulus	6.01E-03
85	GO:0009686: gibberellin biosynthetic process	6.01E-03
86	GO:0009306: protein secretion	6.36E-03
87	GO:0042631: cellular response to water deprivation	7.10E-03
88	GO:0009617: response to bacterium	7.37E-03
89	GO:0009960: endosperm development	7.48E-03
90	GO:0007018: microtubule-based movement	7.87E-03
91	GO:0019252: starch biosynthetic process	8.26E-03
92	GO:0009749: response to glucose	8.26E-03
93	GO:0002229: defense response to oomycetes	8.66E-03
94	GO:0031047: gene silencing by RNA	9.07E-03
95	GO:1901657: glycosyl compound metabolic process	9.48E-03
96	GO:0010090: trichome morphogenesis	9.48E-03
97	GO:0006914: autophagy	9.91E-03
98	GO:0007267: cell-cell signaling	1.03E-02
99	GO:0009737: response to abscisic acid	1.08E-02
100	GO:0000910: cytokinesis	1.08E-02
101	GO:0048366: leaf development	1.13E-02
102	GO:0048573: photoperiodism, flowering	1.26E-02
103	GO:0016049: cell growth	1.31E-02
104	GO:0008219: cell death	1.35E-02
105	GO:0010311: lateral root formation	1.40E-02
106	GO:0009834: plant-type secondary cell wall biogenesis	1.45E-02
107	GO:0006499: N-terminal protein myristoylation	1.45E-02
108	GO:0009637: response to blue light	1.60E-02
109	GO:0045087: innate immune response	1.60E-02
110	GO:0006897: endocytosis	1.81E-02
111	GO:0006397: mRNA processing	1.83E-02
112	GO:0016567: protein ubiquitination	1.85E-02
113	GO:0009744: response to sucrose	1.92E-02
114	GO:0008283: cell proliferation	1.92E-02
115	GO:0009965: leaf morphogenesis	2.08E-02
116	GO:0006857: oligopeptide transport	2.49E-02
117	GO:0006468: protein phosphorylation	2.60E-02
118	GO:0043086: negative regulation of catalytic activity	2.67E-02
119	GO:0009620: response to fungus	2.85E-02
120	GO:0042545: cell wall modification	2.98E-02
121	GO:0009553: embryo sac development	2.98E-02
122	GO:0009624: response to nematode	3.04E-02
123	GO:0006396: RNA processing	3.11E-02
124	GO:0009555: pollen development	3.12E-02
125	GO:0009611: response to wounding	3.19E-02
126	GO:0000398: mRNA splicing, via spliceosome	3.37E-02
127	GO:0006633: fatty acid biosynthetic process	4.20E-02
128	GO:0006511: ubiquitin-dependent protein catabolic process	4.23E-02
129	GO:0045490: pectin catabolic process	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0030621: U4 snRNA binding	0.00E+00
2	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
3	GO:0008987: quinolinate synthetase A activity	0.00E+00
4	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
5	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
6	GO:0002020: protease binding	1.16E-05
7	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	8.61E-05
8	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	8.61E-05
9	GO:0008114: phosphogluconate 2-dehydrogenase activity	8.61E-05
10	GO:0080025: phosphatidylinositol-3,5-bisphosphate binding	8.61E-05
11	GO:0030544: Hsp70 protein binding	8.61E-05
12	GO:0032266: phosphatidylinositol-3-phosphate binding	8.61E-05
13	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.42E-04
14	GO:0051082: unfolded protein binding	4.13E-04
15	GO:0043023: ribosomal large subunit binding	4.92E-04
16	GO:0004351: glutamate decarboxylase activity	4.92E-04
17	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	4.92E-04
18	GO:0043015: gamma-tubulin binding	6.55E-04
19	GO:0047631: ADP-ribose diphosphatase activity	8.29E-04
20	GO:0004356: glutamate-ammonia ligase activity	8.29E-04
21	GO:0017070: U6 snRNA binding	8.29E-04
22	GO:0048040: UDP-glucuronate decarboxylase activity	1.01E-03
23	GO:0035673: oligopeptide transmembrane transporter activity	1.01E-03
24	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.01E-03
25	GO:0016462: pyrophosphatase activity	1.01E-03
26	GO:0005524: ATP binding	1.07E-03
27	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.20E-03
28	GO:0070403: NAD+ binding	1.20E-03
29	GO:0004747: ribokinase activity	1.20E-03
30	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.20E-03
31	GO:0005515: protein binding	1.36E-03
32	GO:0004143: diacylglycerol kinase activity	1.41E-03
33	GO:0004427: inorganic diphosphatase activity	1.41E-03
34	GO:0003729: mRNA binding	1.49E-03
35	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.63E-03
36	GO:0008865: fructokinase activity	1.63E-03
37	GO:0003951: NAD+ kinase activity	1.86E-03
38	GO:0008142: oxysterol binding	1.86E-03
39	GO:0043621: protein self-association	2.04E-03
40	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.35E-03
41	GO:0008047: enzyme activator activity	2.61E-03
42	GO:0031625: ubiquitin protein ligase binding	2.80E-03
43	GO:0015198: oligopeptide transporter activity	3.15E-03
44	GO:0004521: endoribonuclease activity	3.15E-03
45	GO:0005528: FK506 binding	4.65E-03
46	GO:0004540: ribonuclease activity	5.32E-03
47	GO:0033612: receptor serine/threonine kinase binding	5.32E-03
48	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.76E-03
49	GO:0008017: microtubule binding	6.47E-03
50	GO:0008536: Ran GTPase binding	7.48E-03
51	GO:0004518: nuclease activity	9.07E-03
52	GO:0004674: protein serine/threonine kinase activity	1.20E-02
53	GO:0008375: acetylglucosaminyltransferase activity	1.21E-02
54	GO:0102483: scopolin beta-glucosidase activity	1.26E-02
55	GO:0030247: polysaccharide binding	1.26E-02
56	GO:0016301: kinase activity	1.51E-02
57	GO:0008422: beta-glucosidase activity	1.70E-02
58	GO:0051539: 4 iron, 4 sulfur cluster binding	1.76E-02
59	GO:0035091: phosphatidylinositol binding	2.02E-02
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-02
61	GO:0004842: ubiquitin-protein transferase activity	2.29E-02
62	GO:0004672: protein kinase activity	2.47E-02
63	GO:0003777: microtubule motor activity	2.55E-02
64	GO:0045330: aspartyl esterase activity	2.55E-02
65	GO:0016887: ATPase activity	2.73E-02
66	GO:0030599: pectinesterase activity	2.92E-02
67	GO:0003779: actin binding	2.98E-02
68	GO:0000166: nucleotide binding	3.12E-02
69	GO:0030170: pyridoxal phosphate binding	3.85E-02
70	GO:0008565: protein transporter activity	4.06E-02
71	GO:0046910: pectinesterase inhibitor activity	4.27E-02
72	GO:0015297: antiporter activity	4.34E-02
73	GO:0005516: calmodulin binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	8.61E-05
2	GO:0005829: cytosol	9.84E-05
3	GO:0009506: plasmodesma	1.00E-04
4	GO:0005737: cytoplasm	2.51E-04
5	GO:0005794: Golgi apparatus	2.87E-04
6	GO:0005768: endosome	6.22E-04
7	GO:0000145: exocyst	6.84E-04
8	GO:0032580: Golgi cisterna membrane	7.72E-04
9	GO:0030173: integral component of Golgi membrane	1.20E-03
10	GO:0016363: nuclear matrix	1.20E-03
11	GO:0005886: plasma membrane	1.36E-03
12	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.86E-03
13	GO:0010494: cytoplasmic stress granule	2.10E-03
14	GO:0005618: cell wall	2.38E-03
15	GO:0048471: perinuclear region of cytoplasm	2.87E-03
16	GO:0010008: endosome membrane	3.09E-03
17	GO:0019013: viral nucleocapsid	3.43E-03
18	GO:0043234: protein complex	4.34E-03
19	GO:0009524: phragmoplast	4.73E-03
20	GO:0005774: vacuolar membrane	6.54E-03
21	GO:0005871: kinesin complex	6.73E-03
22	GO:0005783: endoplasmic reticulum	7.24E-03
23	GO:0005730: nucleolus	7.62E-03
24	GO:0071944: cell periphery	9.48E-03
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.05E-02
26	GO:0000932: P-body	1.12E-02
27	GO:0005802: trans-Golgi network	1.13E-02
28	GO:0005788: endoplasmic reticulum lumen	1.17E-02
29	GO:0005643: nuclear pore	1.35E-02
30	GO:0019005: SCF ubiquitin ligase complex	1.35E-02
31	GO:0016020: membrane	1.64E-02
32	GO:0009536: plastid	1.97E-02
33	GO:0048046: apoplast	2.40E-02
34	GO:0005635: nuclear envelope	2.49E-02
35	GO:0005789: endoplasmic reticulum membrane	2.60E-02
36	GO:0005681: spliceosomal complex	2.67E-02
37	GO:0016607: nuclear speck	2.73E-02
38	GO:0022626: cytosolic ribosome	2.99E-02