GO Enrichment Analysis of Co-expressed Genes with
AT5G52440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0051246: regulation of protein metabolic process | 0.00E+00 |
| 4 | GO:0048564: photosystem I assembly | 2.21E-05 |
| 5 | GO:0018298: protein-chromophore linkage | 3.39E-05 |
| 6 | GO:0009443: pyridoxal 5'-phosphate salvage | 5.48E-05 |
| 7 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.48E-05 |
| 8 | GO:1904964: positive regulation of phytol biosynthetic process | 5.48E-05 |
| 9 | GO:0042371: vitamin K biosynthetic process | 5.48E-05 |
| 10 | GO:0010362: negative regulation of anion channel activity by blue light | 5.48E-05 |
| 11 | GO:0033388: putrescine biosynthetic process from arginine | 5.48E-05 |
| 12 | GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 5.48E-05 |
| 13 | GO:0009767: photosynthetic electron transport chain | 8.50E-05 |
| 14 | GO:0015979: photosynthesis | 1.22E-04 |
| 15 | GO:0080005: photosystem stoichiometry adjustment | 1.34E-04 |
| 16 | GO:0000256: allantoin catabolic process | 1.34E-04 |
| 17 | GO:0009446: putrescine biosynthetic process | 1.34E-04 |
| 18 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.34E-04 |
| 19 | GO:0006435: threonyl-tRNA aminoacylation | 1.34E-04 |
| 20 | GO:0010136: ureide catabolic process | 2.28E-04 |
| 21 | GO:0006809: nitric oxide biosynthetic process | 3.33E-04 |
| 22 | GO:0006145: purine nucleobase catabolic process | 3.33E-04 |
| 23 | GO:0051016: barbed-end actin filament capping | 3.33E-04 |
| 24 | GO:0010193: response to ozone | 3.60E-04 |
| 25 | GO:0009902: chloroplast relocation | 4.45E-04 |
| 26 | GO:0009765: photosynthesis, light harvesting | 4.45E-04 |
| 27 | GO:0016123: xanthophyll biosynthetic process | 5.66E-04 |
| 28 | GO:0016120: carotene biosynthetic process | 5.66E-04 |
| 29 | GO:0009643: photosynthetic acclimation | 6.92E-04 |
| 30 | GO:1901259: chloroplast rRNA processing | 8.25E-04 |
| 31 | GO:0009772: photosynthetic electron transport in photosystem II | 9.62E-04 |
| 32 | GO:0009231: riboflavin biosynthetic process | 1.11E-03 |
| 33 | GO:0009657: plastid organization | 1.26E-03 |
| 34 | GO:0009821: alkaloid biosynthetic process | 1.41E-03 |
| 35 | GO:0000373: Group II intron splicing | 1.41E-03 |
| 36 | GO:0006364: rRNA processing | 1.42E-03 |
| 37 | GO:0009638: phototropism | 1.58E-03 |
| 38 | GO:0009098: leucine biosynthetic process | 1.58E-03 |
| 39 | GO:0045036: protein targeting to chloroplast | 1.75E-03 |
| 40 | GO:0006259: DNA metabolic process | 1.75E-03 |
| 41 | GO:0006265: DNA topological change | 1.93E-03 |
| 42 | GO:0009773: photosynthetic electron transport in photosystem I | 1.93E-03 |
| 43 | GO:0045037: protein import into chloroplast stroma | 2.11E-03 |
| 44 | GO:0009725: response to hormone | 2.30E-03 |
| 45 | GO:0006807: nitrogen compound metabolic process | 2.30E-03 |
| 46 | GO:0009735: response to cytokinin | 2.60E-03 |
| 47 | GO:0046686: response to cadmium ion | 2.70E-03 |
| 48 | GO:0006863: purine nucleobase transport | 2.90E-03 |
| 49 | GO:0007017: microtubule-based process | 3.32E-03 |
| 50 | GO:0007623: circadian rhythm | 3.43E-03 |
| 51 | GO:0009306: protein secretion | 4.23E-03 |
| 52 | GO:0016117: carotenoid biosynthetic process | 4.47E-03 |
| 53 | GO:0010118: stomatal movement | 4.71E-03 |
| 54 | GO:0009793: embryo development ending in seed dormancy | 4.91E-03 |
| 55 | GO:0048868: pollen tube development | 4.96E-03 |
| 56 | GO:0015986: ATP synthesis coupled proton transport | 5.22E-03 |
| 57 | GO:0007059: chromosome segregation | 5.22E-03 |
| 58 | GO:0009658: chloroplast organization | 5.28E-03 |
| 59 | GO:0042254: ribosome biogenesis | 5.38E-03 |
| 60 | GO:0055114: oxidation-reduction process | 5.42E-03 |
| 61 | GO:0009791: post-embryonic development | 5.48E-03 |
| 62 | GO:0019761: glucosinolate biosynthetic process | 6.00E-03 |
| 63 | GO:0046777: protein autophosphorylation | 6.99E-03 |
| 64 | GO:0010027: thylakoid membrane organization | 7.40E-03 |
| 65 | GO:0009816: defense response to bacterium, incompatible interaction | 7.69E-03 |
| 66 | GO:0015995: chlorophyll biosynthetic process | 8.29E-03 |
| 67 | GO:0000160: phosphorelay signal transduction system | 9.22E-03 |
| 68 | GO:0007568: aging | 9.86E-03 |
| 69 | GO:0009867: jasmonic acid mediated signaling pathway | 1.05E-02 |
| 70 | GO:0009637: response to blue light | 1.05E-02 |
| 71 | GO:0006810: transport | 1.16E-02 |
| 72 | GO:0009744: response to sucrose | 1.26E-02 |
| 73 | GO:0009644: response to high light intensity | 1.33E-02 |
| 74 | GO:0010224: response to UV-B | 1.59E-02 |
| 75 | GO:0009416: response to light stimulus | 1.72E-02 |
| 76 | GO:0009553: embryo sac development | 1.95E-02 |
| 77 | GO:0055085: transmembrane transport | 2.18E-02 |
| 78 | GO:0009058: biosynthetic process | 2.43E-02 |
| 79 | GO:0009790: embryo development | 2.61E-02 |
| 80 | GO:0009451: RNA modification | 2.99E-02 |
| 81 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.04E-02 |
| 82 | GO:0010468: regulation of gene expression | 3.34E-02 |
| 83 | GO:0006979: response to oxidative stress | 3.51E-02 |
| 84 | GO:0015031: protein transport | 4.41E-02 |
| 85 | GO:0048366: leaf development | 4.51E-02 |
| 86 | GO:0080167: response to karrikin | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 6 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 7 | GO:0030941: chloroplast targeting sequence binding | 5.48E-05 |
| 8 | GO:0004829: threonine-tRNA ligase activity | 1.34E-04 |
| 9 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 1.34E-04 |
| 10 | GO:0022891: substrate-specific transmembrane transporter activity | 2.10E-04 |
| 11 | GO:0070402: NADPH binding | 2.28E-04 |
| 12 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.28E-04 |
| 13 | GO:0009882: blue light photoreceptor activity | 3.33E-04 |
| 14 | GO:0016851: magnesium chelatase activity | 3.33E-04 |
| 15 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 4.45E-04 |
| 16 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 4.45E-04 |
| 17 | GO:0051861: glycolipid binding | 4.45E-04 |
| 18 | GO:0043495: protein anchor | 4.45E-04 |
| 19 | GO:0016168: chlorophyll binding | 5.47E-04 |
| 20 | GO:0019899: enzyme binding | 9.62E-04 |
| 21 | GO:0004033: aldo-keto reductase (NADP) activity | 1.11E-03 |
| 22 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 1.26E-03 |
| 23 | GO:0016844: strictosidine synthase activity | 1.58E-03 |
| 24 | GO:0016491: oxidoreductase activity | 2.09E-03 |
| 25 | GO:0000155: phosphorelay sensor kinase activity | 2.30E-03 |
| 26 | GO:0008565: protein transporter activity | 2.98E-03 |
| 27 | GO:0005345: purine nucleobase transmembrane transporter activity | 3.32E-03 |
| 28 | GO:0042802: identical protein binding | 4.34E-03 |
| 29 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 4.96E-03 |
| 30 | GO:0010181: FMN binding | 5.22E-03 |
| 31 | GO:0004872: receptor activity | 5.48E-03 |
| 32 | GO:0048038: quinone binding | 5.74E-03 |
| 33 | GO:0008483: transaminase activity | 6.83E-03 |
| 34 | GO:0003723: RNA binding | 9.36E-03 |
| 35 | GO:0050897: cobalt ion binding | 9.86E-03 |
| 36 | GO:0009055: electron carrier activity | 1.04E-02 |
| 37 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.33E-02 |
| 38 | GO:0051287: NAD binding | 1.44E-02 |
| 39 | GO:0003777: microtubule motor activity | 1.67E-02 |
| 40 | GO:0003779: actin binding | 1.95E-02 |
| 41 | GO:0019843: rRNA binding | 2.34E-02 |
| 42 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.38E-02 |
| 43 | GO:0005507: copper ion binding | 2.45E-02 |
| 44 | GO:0000287: magnesium ion binding | 3.96E-02 |
| 45 | GO:0016788: hydrolase activity, acting on ester bonds | 4.07E-02 |
| 46 | GO:0050660: flavin adenine dinucleotide binding | 4.45E-02 |
| 47 | GO:0008233: peptidase activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.33E-24 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.91E-08 |
| 4 | GO:0009570: chloroplast stroma | 2.60E-06 |
| 5 | GO:0042644: chloroplast nucleoid | 3.56E-05 |
| 6 | GO:0009941: chloroplast envelope | 4.31E-05 |
| 7 | GO:0030095: chloroplast photosystem II | 9.76E-05 |
| 8 | GO:0008290: F-actin capping protein complex | 1.34E-04 |
| 9 | GO:0033281: TAT protein transport complex | 2.28E-04 |
| 10 | GO:0010007: magnesium chelatase complex | 2.28E-04 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 2.53E-04 |
| 12 | GO:0042646: plastid nucleoid | 3.33E-04 |
| 13 | GO:0009523: photosystem II | 3.37E-04 |
| 14 | GO:0030286: dynein complex | 4.45E-04 |
| 15 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 4.45E-04 |
| 16 | GO:0009295: nucleoid | 4.63E-04 |
| 17 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 6.92E-04 |
| 18 | GO:0031359: integral component of chloroplast outer membrane | 9.62E-04 |
| 19 | GO:0031977: thylakoid lumen | 9.88E-04 |
| 20 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.41E-03 |
| 21 | GO:0009706: chloroplast inner membrane | 2.00E-03 |
| 22 | GO:0009508: plastid chromosome | 2.30E-03 |
| 23 | GO:0005875: microtubule associated complex | 2.90E-03 |
| 24 | GO:0042651: thylakoid membrane | 3.32E-03 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 3.32E-03 |
| 26 | GO:0009579: thylakoid | 3.65E-03 |
| 27 | GO:0009534: chloroplast thylakoid | 3.70E-03 |
| 28 | GO:0019898: extrinsic component of membrane | 5.48E-03 |
| 29 | GO:0010319: stromule | 6.83E-03 |
| 30 | GO:0009707: chloroplast outer membrane | 8.91E-03 |
| 31 | GO:0005747: mitochondrial respiratory chain complex I | 1.79E-02 |
| 32 | GO:0010287: plastoglobule | 2.25E-02 |
| 33 | GO:0005623: cell | 2.38E-02 |
| 34 | GO:0005759: mitochondrial matrix | 2.75E-02 |
| 35 | GO:0009505: plant-type cell wall | 4.35E-02 |
| 36 | GO:0031969: chloroplast membrane | 4.68E-02 |