GO Enrichment Analysis of Co-expressed Genes with
AT5G52010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 2 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 3 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 6 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 7 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 8 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 9 | GO:0090391: granum assembly | 1.12E-08 |
| 10 | GO:0010027: thylakoid membrane organization | 6.96E-07 |
| 11 | GO:0015979: photosynthesis | 6.83E-06 |
| 12 | GO:0006021: inositol biosynthetic process | 3.11E-05 |
| 13 | GO:0046855: inositol phosphate dephosphorylation | 7.36E-05 |
| 14 | GO:0042549: photosystem II stabilization | 7.36E-05 |
| 15 | GO:1901259: chloroplast rRNA processing | 1.02E-04 |
| 16 | GO:0010196: nonphotochemical quenching | 1.35E-04 |
| 17 | GO:0048564: photosystem I assembly | 1.73E-04 |
| 18 | GO:0033388: putrescine biosynthetic process from arginine | 2.06E-04 |
| 19 | GO:0000476: maturation of 4.5S rRNA | 2.06E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.06E-04 |
| 21 | GO:0000967: rRNA 5'-end processing | 2.06E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.06E-04 |
| 23 | GO:0000481: maturation of 5S rRNA | 2.06E-04 |
| 24 | GO:1904964: positive regulation of phytol biosynthetic process | 2.06E-04 |
| 25 | GO:0065002: intracellular protein transmembrane transport | 2.06E-04 |
| 26 | GO:0043686: co-translational protein modification | 2.06E-04 |
| 27 | GO:0043007: maintenance of rDNA | 2.06E-04 |
| 28 | GO:0034337: RNA folding | 2.06E-04 |
| 29 | GO:0043953: protein transport by the Tat complex | 2.06E-04 |
| 30 | GO:0009658: chloroplast organization | 2.20E-04 |
| 31 | GO:0016311: dephosphorylation | 4.16E-04 |
| 32 | GO:0009629: response to gravity | 4.62E-04 |
| 33 | GO:0006432: phenylalanyl-tRNA aminoacylation | 4.62E-04 |
| 34 | GO:0000256: allantoin catabolic process | 4.62E-04 |
| 35 | GO:0009446: putrescine biosynthetic process | 4.62E-04 |
| 36 | GO:0006729: tetrahydrobiopterin biosynthetic process | 4.62E-04 |
| 37 | GO:0006568: tryptophan metabolic process | 4.62E-04 |
| 38 | GO:0010024: phytochromobilin biosynthetic process | 4.62E-04 |
| 39 | GO:0034470: ncRNA processing | 4.62E-04 |
| 40 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.62E-04 |
| 41 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.62E-04 |
| 42 | GO:0006790: sulfur compound metabolic process | 4.85E-04 |
| 43 | GO:0019853: L-ascorbic acid biosynthetic process | 6.92E-04 |
| 44 | GO:0046854: phosphatidylinositol phosphorylation | 6.92E-04 |
| 45 | GO:0010136: ureide catabolic process | 7.52E-04 |
| 46 | GO:0005977: glycogen metabolic process | 7.52E-04 |
| 47 | GO:0006788: heme oxidation | 7.52E-04 |
| 48 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.07E-03 |
| 49 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.07E-03 |
| 50 | GO:2001141: regulation of RNA biosynthetic process | 1.07E-03 |
| 51 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.07E-03 |
| 52 | GO:0006020: inositol metabolic process | 1.07E-03 |
| 53 | GO:0010239: chloroplast mRNA processing | 1.07E-03 |
| 54 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.07E-03 |
| 55 | GO:0006145: purine nucleobase catabolic process | 1.07E-03 |
| 56 | GO:0051016: barbed-end actin filament capping | 1.07E-03 |
| 57 | GO:0010021: amylopectin biosynthetic process | 1.43E-03 |
| 58 | GO:0015994: chlorophyll metabolic process | 1.43E-03 |
| 59 | GO:0016558: protein import into peroxisome matrix | 1.81E-03 |
| 60 | GO:0006564: L-serine biosynthetic process | 1.81E-03 |
| 61 | GO:0031365: N-terminal protein amino acid modification | 1.81E-03 |
| 62 | GO:0048280: vesicle fusion with Golgi apparatus | 2.69E-03 |
| 63 | GO:0015995: chlorophyll biosynthetic process | 3.45E-03 |
| 64 | GO:0030091: protein repair | 3.67E-03 |
| 65 | GO:0032508: DNA duplex unwinding | 3.67E-03 |
| 66 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.67E-03 |
| 67 | GO:0000105: histidine biosynthetic process | 3.67E-03 |
| 68 | GO:0009231: riboflavin biosynthetic process | 3.67E-03 |
| 69 | GO:0016559: peroxisome fission | 3.67E-03 |
| 70 | GO:0009642: response to light intensity | 3.67E-03 |
| 71 | GO:0018298: protein-chromophore linkage | 3.82E-03 |
| 72 | GO:0006997: nucleus organization | 4.20E-03 |
| 73 | GO:0032544: plastid translation | 4.20E-03 |
| 74 | GO:0017004: cytochrome complex assembly | 4.20E-03 |
| 75 | GO:0071482: cellular response to light stimulus | 4.20E-03 |
| 76 | GO:0009657: plastid organization | 4.20E-03 |
| 77 | GO:0009821: alkaloid biosynthetic process | 4.75E-03 |
| 78 | GO:0010206: photosystem II repair | 4.75E-03 |
| 79 | GO:0009637: response to blue light | 4.84E-03 |
| 80 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.32E-03 |
| 81 | GO:0006896: Golgi to vacuole transport | 5.93E-03 |
| 82 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.93E-03 |
| 83 | GO:0010114: response to red light | 6.23E-03 |
| 84 | GO:0019684: photosynthesis, light reaction | 6.55E-03 |
| 85 | GO:0006415: translational termination | 6.55E-03 |
| 86 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.55E-03 |
| 87 | GO:0072593: reactive oxygen species metabolic process | 6.55E-03 |
| 88 | GO:0006352: DNA-templated transcription, initiation | 6.55E-03 |
| 89 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.55E-03 |
| 90 | GO:0005983: starch catabolic process | 7.20E-03 |
| 91 | GO:0006807: nitrogen compound metabolic process | 7.87E-03 |
| 92 | GO:0006364: rRNA processing | 8.40E-03 |
| 93 | GO:0080167: response to karrikin | 8.52E-03 |
| 94 | GO:0010207: photosystem II assembly | 8.56E-03 |
| 95 | GO:0010020: chloroplast fission | 8.56E-03 |
| 96 | GO:0010030: positive regulation of seed germination | 9.27E-03 |
| 97 | GO:0006863: purine nucleobase transport | 1.00E-02 |
| 98 | GO:0006833: water transport | 1.00E-02 |
| 99 | GO:0000162: tryptophan biosynthetic process | 1.00E-02 |
| 100 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.15E-02 |
| 101 | GO:0019953: sexual reproduction | 1.15E-02 |
| 102 | GO:0048511: rhythmic process | 1.23E-02 |
| 103 | GO:0019915: lipid storage | 1.23E-02 |
| 104 | GO:0048278: vesicle docking | 1.23E-02 |
| 105 | GO:0032259: methylation | 1.32E-02 |
| 106 | GO:0071369: cellular response to ethylene stimulus | 1.40E-02 |
| 107 | GO:0006012: galactose metabolic process | 1.40E-02 |
| 108 | GO:0009561: megagametogenesis | 1.48E-02 |
| 109 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.57E-02 |
| 110 | GO:0042147: retrograde transport, endosome to Golgi | 1.57E-02 |
| 111 | GO:0034220: ion transmembrane transport | 1.66E-02 |
| 112 | GO:0000413: protein peptidyl-prolyl isomerization | 1.66E-02 |
| 113 | GO:0042631: cellular response to water deprivation | 1.66E-02 |
| 114 | GO:0048868: pollen tube development | 1.75E-02 |
| 115 | GO:0009790: embryo development | 1.76E-02 |
| 116 | GO:0061025: membrane fusion | 1.84E-02 |
| 117 | GO:0042752: regulation of circadian rhythm | 1.84E-02 |
| 118 | GO:0019252: starch biosynthetic process | 1.94E-02 |
| 119 | GO:0055072: iron ion homeostasis | 1.94E-02 |
| 120 | GO:0006623: protein targeting to vacuole | 1.94E-02 |
| 121 | GO:0006413: translational initiation | 1.94E-02 |
| 122 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.03E-02 |
| 123 | GO:0006635: fatty acid beta-oxidation | 2.03E-02 |
| 124 | GO:0071554: cell wall organization or biogenesis | 2.03E-02 |
| 125 | GO:0010583: response to cyclopentenone | 2.13E-02 |
| 126 | GO:0009567: double fertilization forming a zygote and endosperm | 2.33E-02 |
| 127 | GO:0009793: embryo development ending in seed dormancy | 2.66E-02 |
| 128 | GO:0006906: vesicle fusion | 2.86E-02 |
| 129 | GO:0042128: nitrate assimilation | 2.86E-02 |
| 130 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.97E-02 |
| 131 | GO:0009817: defense response to fungus, incompatible interaction | 3.19E-02 |
| 132 | GO:0042254: ribosome biogenesis | 3.28E-02 |
| 133 | GO:0009813: flavonoid biosynthetic process | 3.31E-02 |
| 134 | GO:0010218: response to far red light | 3.42E-02 |
| 135 | GO:0009867: jasmonic acid mediated signaling pathway | 3.78E-02 |
| 136 | GO:0006810: transport | 3.78E-02 |
| 137 | GO:0009853: photorespiration | 3.78E-02 |
| 138 | GO:0006457: protein folding | 3.96E-02 |
| 139 | GO:0006887: exocytosis | 4.27E-02 |
| 140 | GO:0009926: auxin polar transport | 4.52E-02 |
| 141 | GO:0055114: oxidation-reduction process | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 2 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 3 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 4 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 7 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 8 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 9 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 10 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 11 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 12 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 13 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 14 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.01E-06 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.01E-06 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.01E-06 |
| 18 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.02E-04 |
| 19 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.16E-04 |
| 20 | GO:0004033: aldo-keto reductase (NADP) activity | 1.73E-04 |
| 21 | GO:0042586: peptide deformylase activity | 2.06E-04 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.06E-04 |
| 23 | GO:0019203: carbohydrate phosphatase activity | 2.06E-04 |
| 24 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.06E-04 |
| 25 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.06E-04 |
| 26 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.06E-04 |
| 27 | GO:0050308: sugar-phosphatase activity | 2.06E-04 |
| 28 | GO:0019843: rRNA binding | 3.92E-04 |
| 29 | GO:0019172: glyoxalase III activity | 4.62E-04 |
| 30 | GO:0019156: isoamylase activity | 4.62E-04 |
| 31 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.62E-04 |
| 32 | GO:0047746: chlorophyllase activity | 4.62E-04 |
| 33 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.62E-04 |
| 34 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.62E-04 |
| 35 | GO:0004826: phenylalanine-tRNA ligase activity | 4.62E-04 |
| 36 | GO:0003993: acid phosphatase activity | 6.35E-04 |
| 37 | GO:0004751: ribose-5-phosphate isomerase activity | 7.52E-04 |
| 38 | GO:0070402: NADPH binding | 7.52E-04 |
| 39 | GO:0016149: translation release factor activity, codon specific | 1.07E-03 |
| 40 | GO:0043495: protein anchor | 1.43E-03 |
| 41 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.43E-03 |
| 42 | GO:0004392: heme oxygenase (decyclizing) activity | 1.43E-03 |
| 43 | GO:0001053: plastid sigma factor activity | 1.43E-03 |
| 44 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.43E-03 |
| 45 | GO:0008453: alanine-glyoxylate transaminase activity | 1.43E-03 |
| 46 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.43E-03 |
| 47 | GO:0016987: sigma factor activity | 1.43E-03 |
| 48 | GO:0042578: phosphoric ester hydrolase activity | 2.24E-03 |
| 49 | GO:0004556: alpha-amylase activity | 2.24E-03 |
| 50 | GO:0004462: lactoylglutathione lyase activity | 2.24E-03 |
| 51 | GO:2001070: starch binding | 2.24E-03 |
| 52 | GO:0008195: phosphatidate phosphatase activity | 2.69E-03 |
| 53 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.69E-03 |
| 54 | GO:0016168: chlorophyll binding | 3.10E-03 |
| 55 | GO:0019899: enzyme binding | 3.16E-03 |
| 56 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.75E-03 |
| 57 | GO:0003747: translation release factor activity | 4.75E-03 |
| 58 | GO:0000149: SNARE binding | 5.28E-03 |
| 59 | GO:0016844: strictosidine synthase activity | 5.32E-03 |
| 60 | GO:0005484: SNAP receptor activity | 6.23E-03 |
| 61 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.74E-03 |
| 62 | GO:0000049: tRNA binding | 7.20E-03 |
| 63 | GO:0004521: endoribonuclease activity | 7.20E-03 |
| 64 | GO:0031072: heat shock protein binding | 7.87E-03 |
| 65 | GO:0004565: beta-galactosidase activity | 7.87E-03 |
| 66 | GO:0031409: pigment binding | 1.00E-02 |
| 67 | GO:0005528: FK506 binding | 1.08E-02 |
| 68 | GO:0043424: protein histidine kinase binding | 1.15E-02 |
| 69 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.15E-02 |
| 70 | GO:0003924: GTPase activity | 1.40E-02 |
| 71 | GO:0022891: substrate-specific transmembrane transporter activity | 1.40E-02 |
| 72 | GO:0005525: GTP binding | 1.58E-02 |
| 73 | GO:0048038: quinone binding | 2.03E-02 |
| 74 | GO:0008017: microtubule binding | 2.18E-02 |
| 75 | GO:0016787: hydrolase activity | 2.34E-02 |
| 76 | GO:0008483: transaminase activity | 2.43E-02 |
| 77 | GO:0003743: translation initiation factor activity | 2.43E-02 |
| 78 | GO:0016597: amino acid binding | 2.54E-02 |
| 79 | GO:0016413: O-acetyltransferase activity | 2.54E-02 |
| 80 | GO:0042802: identical protein binding | 2.64E-02 |
| 81 | GO:0015250: water channel activity | 2.64E-02 |
| 82 | GO:0008168: methyltransferase activity | 3.10E-02 |
| 83 | GO:0016788: hydrolase activity, acting on ester bonds | 3.28E-02 |
| 84 | GO:0003723: RNA binding | 3.91E-02 |
| 85 | GO:0052689: carboxylic ester hydrolase activity | 4.39E-02 |
| 86 | GO:0005198: structural molecule activity | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 4 | GO:0043235: receptor complex | 0.00E+00 |
| 5 | GO:0009507: chloroplast | 5.29E-46 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.64E-21 |
| 7 | GO:0009570: chloroplast stroma | 3.44E-19 |
| 8 | GO:0009534: chloroplast thylakoid | 1.01E-15 |
| 9 | GO:0009941: chloroplast envelope | 1.11E-09 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.52E-07 |
| 11 | GO:0031977: thylakoid lumen | 1.55E-07 |
| 12 | GO:0009579: thylakoid | 2.32E-07 |
| 13 | GO:0009538: photosystem I reaction center | 1.73E-04 |
| 14 | GO:0031361: integral component of thylakoid membrane | 2.06E-04 |
| 15 | GO:0010287: plastoglobule | 3.60E-04 |
| 16 | GO:0008290: F-actin capping protein complex | 4.62E-04 |
| 17 | GO:0033281: TAT protein transport complex | 7.52E-04 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 9.35E-04 |
| 19 | GO:0042646: plastid nucleoid | 1.07E-03 |
| 20 | GO:0009523: photosystem II | 1.91E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 1.91E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 3.16E-03 |
| 23 | GO:0012507: ER to Golgi transport vesicle membrane | 3.67E-03 |
| 24 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.75E-03 |
| 25 | GO:0042644: chloroplast nucleoid | 4.75E-03 |
| 26 | GO:0031201: SNARE complex | 5.75E-03 |
| 27 | GO:0055028: cortical microtubule | 5.93E-03 |
| 28 | GO:0012511: monolayer-surrounded lipid storage body | 6.55E-03 |
| 29 | GO:0032040: small-subunit processome | 7.20E-03 |
| 30 | GO:0009508: plastid chromosome | 7.87E-03 |
| 31 | GO:0030095: chloroplast photosystem II | 8.56E-03 |
| 32 | GO:0030076: light-harvesting complex | 9.27E-03 |
| 33 | GO:0042651: thylakoid membrane | 1.15E-02 |
| 34 | GO:0009522: photosystem I | 1.84E-02 |
| 35 | GO:0009504: cell plate | 1.94E-02 |
| 36 | GO:0031965: nuclear membrane | 1.94E-02 |
| 37 | GO:0005840: ribosome | 2.31E-02 |
| 38 | GO:0005778: peroxisomal membrane | 2.43E-02 |
| 39 | GO:0009295: nucleoid | 2.43E-02 |
| 40 | GO:0030529: intracellular ribonucleoprotein complex | 2.64E-02 |
| 41 | GO:0009707: chloroplast outer membrane | 3.19E-02 |
| 42 | GO:0016020: membrane | 3.48E-02 |
| 43 | GO:0015934: large ribosomal subunit | 3.54E-02 |
| 44 | GO:0031902: late endosome membrane | 4.27E-02 |