co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G50000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0009249: protein lipoylation	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0048856: anatomical structure development	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0046460: neutral lipid biosynthetic process	0.00E+00
8	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
9	GO:0034196: acylglycerol transport	0.00E+00
10	GO:0032928: regulation of superoxide anion generation	0.00E+00
11	GO:0016576: histone dephosphorylation	0.00E+00
12	GO:0006907: pinocytosis	0.00E+00
13	GO:0010343: singlet oxygen-mediated programmed cell death	9.18E-07
14	GO:0010117: photoprotection	2.48E-05
15	GO:0031063: regulation of histone deacetylation	1.35E-04
16	GO:0048438: floral whorl development	1.35E-04
17	GO:0034970: histone H3-R2 methylation	1.35E-04
18	GO:0034972: histone H3-R26 methylation	1.35E-04
19	GO:0071266: 'de novo' L-methionine biosynthetic process	1.35E-04
20	GO:0019346: transsulfuration	1.35E-04
21	GO:0019343: cysteine biosynthetic process via cystathionine	1.35E-04
22	GO:1990052: ER to chloroplast lipid transport	1.35E-04
23	GO:0034971: histone H3-R17 methylation	1.35E-04
24	GO:0072387: flavin adenine dinucleotide metabolic process	1.35E-04
25	GO:0035335: peptidyl-tyrosine dephosphorylation	3.11E-04
26	GO:0016122: xanthophyll metabolic process	3.11E-04
27	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	3.11E-04
28	GO:0043039: tRNA aminoacylation	3.11E-04
29	GO:1901529: positive regulation of anion channel activity	3.11E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	3.11E-04
31	GO:0050688: regulation of defense response to virus	3.11E-04
32	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.11E-04
33	GO:0000002: mitochondrial genome maintenance	3.11E-04
34	GO:0099402: plant organ development	3.11E-04
35	GO:0009432: SOS response	5.13E-04
36	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	5.13E-04
37	GO:1902448: positive regulation of shade avoidance	5.13E-04
38	GO:1901672: positive regulation of systemic acquired resistance	5.13E-04
39	GO:0009150: purine ribonucleotide metabolic process	5.13E-04
40	GO:0045739: positive regulation of DNA repair	5.13E-04
41	GO:0000730: DNA recombinase assembly	7.34E-04
42	GO:0033014: tetrapyrrole biosynthetic process	7.34E-04
43	GO:1901332: negative regulation of lateral root development	7.34E-04
44	GO:0009958: positive gravitropism	9.40E-04
45	GO:0042274: ribosomal small subunit biogenesis	9.73E-04
46	GO:0031935: regulation of chromatin silencing	9.73E-04
47	GO:1902347: response to strigolactone	9.73E-04
48	GO:0034613: cellular protein localization	9.73E-04
49	GO:0009107: lipoate biosynthetic process	1.23E-03
50	GO:0009616: virus induced gene silencing	1.23E-03
51	GO:0000304: response to singlet oxygen	1.23E-03
52	GO:0046283: anthocyanin-containing compound metabolic process	1.23E-03
53	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.51E-03
54	GO:0016070: RNA metabolic process	1.51E-03
55	GO:0031053: primary miRNA processing	1.51E-03
56	GO:0045962: positive regulation of development, heterochronic	1.51E-03
57	GO:1901371: regulation of leaf morphogenesis	1.51E-03
58	GO:0000741: karyogamy	1.51E-03
59	GO:0060918: auxin transport	1.51E-03
60	GO:0016126: sterol biosynthetic process	1.64E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	1.81E-03
62	GO:0009451: RNA modification	1.81E-03
63	GO:0010310: regulation of hydrogen peroxide metabolic process	1.81E-03
64	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.81E-03
65	GO:0034389: lipid particle organization	1.81E-03
66	GO:0010076: maintenance of floral meristem identity	1.81E-03
67	GO:0010016: shoot system morphogenesis	1.81E-03
68	GO:1900056: negative regulation of leaf senescence	2.12E-03
69	GO:0042148: strand invasion	2.12E-03
70	GO:0010050: vegetative phase change	2.12E-03
71	GO:0080111: DNA demethylation	2.12E-03
72	GO:0051510: regulation of unidimensional cell growth	2.12E-03
73	GO:0009910: negative regulation of flower development	2.46E-03
74	GO:0045292: mRNA cis splicing, via spliceosome	2.46E-03
75	GO:0010928: regulation of auxin mediated signaling pathway	2.46E-03
76	GO:0009704: de-etiolation	2.46E-03
77	GO:0022900: electron transport chain	2.81E-03
78	GO:0010212: response to ionizing radiation	2.81E-03
79	GO:0098656: anion transmembrane transport	3.17E-03
80	GO:0019432: triglyceride biosynthetic process	3.17E-03
81	GO:0006783: heme biosynthetic process	3.17E-03
82	GO:1900426: positive regulation of defense response to bacterium	3.55E-03
83	GO:0009638: phototropism	3.55E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	3.55E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	3.55E-03
86	GO:0010267: production of ta-siRNAs involved in RNA interference	3.55E-03
87	GO:0048366: leaf development	3.76E-03
88	GO:0009965: leaf morphogenesis	3.89E-03
89	GO:0009688: abscisic acid biosynthetic process	3.95E-03
90	GO:0043085: positive regulation of catalytic activity	4.36E-03
91	GO:0006790: sulfur compound metabolic process	4.79E-03
92	GO:0006312: mitotic recombination	4.79E-03
93	GO:0010582: floral meristem determinacy	4.79E-03
94	GO:0010075: regulation of meristem growth	5.22E-03
95	GO:0009767: photosynthetic electron transport chain	5.22E-03
96	GO:0009785: blue light signaling pathway	5.22E-03
97	GO:0009266: response to temperature stimulus	5.68E-03
98	GO:0032259: methylation	6.23E-03
99	GO:0006071: glycerol metabolic process	6.62E-03
100	GO:0000162: tryptophan biosynthetic process	6.62E-03
101	GO:0010025: wax biosynthetic process	6.62E-03
102	GO:2000377: regulation of reactive oxygen species metabolic process	7.11E-03
103	GO:0006418: tRNA aminoacylation for protein translation	7.62E-03
104	GO:0007017: microtubule-based process	7.62E-03
105	GO:0010087: phloem or xylem histogenesis	1.09E-02
106	GO:0010118: stomatal movement	1.09E-02
107	GO:0010051: xylem and phloem pattern formation	1.09E-02
108	GO:0010197: polar nucleus fusion	1.15E-02
109	GO:0042752: regulation of circadian rhythm	1.21E-02
110	GO:0009646: response to absence of light	1.21E-02
111	GO:0009851: auxin biosynthetic process	1.27E-02
112	GO:0006470: protein dephosphorylation	1.31E-02
113	GO:0007264: small GTPase mediated signal transduction	1.40E-02
114	GO:0006310: DNA recombination	1.53E-02
115	GO:0051607: defense response to virus	1.66E-02
116	GO:0000910: cytokinesis	1.66E-02
117	GO:0016579: protein deubiquitination	1.66E-02
118	GO:0009658: chloroplast organization	1.78E-02
119	GO:0015995: chlorophyll biosynthetic process	1.95E-02
120	GO:0018298: protein-chromophore linkage	2.09E-02
121	GO:0006811: ion transport	2.24E-02
122	GO:0010218: response to far red light	2.24E-02
123	GO:0009637: response to blue light	2.48E-02
124	GO:0045892: negative regulation of transcription, DNA-templated	2.68E-02
125	GO:0006897: endocytosis	2.80E-02
126	GO:0010114: response to red light	2.97E-02
127	GO:0009640: photomorphogenesis	2.97E-02
128	GO:0008283: cell proliferation	2.97E-02
129	GO:0009644: response to high light intensity	3.14E-02
130	GO:0009408: response to heat	3.26E-02
131	GO:0006260: DNA replication	3.40E-02
132	GO:0000165: MAPK cascade	3.40E-02
133	GO:0030154: cell differentiation	3.68E-02
134	GO:0051603: proteolysis involved in cellular protein catabolic process	3.76E-02
135	GO:0006417: regulation of translation	3.95E-02
136	GO:0009909: regulation of flower development	3.95E-02
137	GO:0048367: shoot system development	4.23E-02
138	GO:0006508: proteolysis	4.64E-02
139	GO:0006396: RNA processing	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0004848: ureidoglycolate hydrolase activity	3.44E-06
6	GO:0004123: cystathionine gamma-lyase activity	1.35E-04
7	GO:0046906: tetrapyrrole binding	1.35E-04
8	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.35E-04
9	GO:0004831: tyrosine-tRNA ligase activity	1.35E-04
10	GO:0004325: ferrochelatase activity	1.35E-04
11	GO:0004121: cystathionine beta-lyase activity	1.35E-04
12	GO:0016415: octanoyltransferase activity	3.11E-04
13	GO:0015929: hexosaminidase activity	3.11E-04
14	GO:0004563: beta-N-acetylhexosaminidase activity	3.11E-04
15	GO:0035241: protein-arginine omega-N monomethyltransferase activity	3.11E-04
16	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	3.11E-04
17	GO:0017118: lipoyltransferase activity	3.11E-04
18	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	3.11E-04
19	GO:0008168: methyltransferase activity	4.81E-04
20	GO:0008469: histone-arginine N-methyltransferase activity	5.13E-04
21	GO:0004180: carboxypeptidase activity	5.13E-04
22	GO:0019003: GDP binding	5.13E-04
23	GO:0003962: cystathionine gamma-synthase activity	5.13E-04
24	GO:0000900: translation repressor activity, nucleic acid binding	5.13E-04
25	GO:0000254: C-4 methylsterol oxidase activity	7.34E-04
26	GO:0000339: RNA cap binding	7.34E-04
27	GO:0009882: blue light photoreceptor activity	7.34E-04
28	GO:0047627: adenylylsulfatase activity	7.34E-04
29	GO:0004834: tryptophan synthase activity	9.73E-04
30	GO:0004518: nuclease activity	1.22E-03
31	GO:0070300: phosphatidic acid binding	1.81E-03
32	GO:0004144: diacylglycerol O-acyltransferase activity	1.81E-03
33	GO:0000150: recombinase activity	2.12E-03
34	GO:0019899: enzyme binding	2.12E-03
35	GO:0004520: endodeoxyribonuclease activity	2.46E-03
36	GO:0000400: four-way junction DNA binding	2.46E-03
37	GO:0004525: ribonuclease III activity	2.46E-03
38	GO:0071949: FAD binding	3.17E-03
39	GO:0001055: RNA polymerase II activity	3.55E-03
40	GO:0016491: oxidoreductase activity	3.59E-03
41	GO:0004713: protein tyrosine kinase activity	3.95E-03
42	GO:0003723: RNA binding	4.15E-03
43	GO:0001054: RNA polymerase I activity	4.36E-03
44	GO:0001056: RNA polymerase III activity	4.79E-03
45	GO:0005315: inorganic phosphate transmembrane transporter activity	5.22E-03
46	GO:0042803: protein homodimerization activity	5.35E-03
47	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.68E-03
48	GO:0003887: DNA-directed DNA polymerase activity	6.62E-03
49	GO:0004519: endonuclease activity	7.32E-03
50	GO:0008094: DNA-dependent ATPase activity	8.14E-03
51	GO:0004176: ATP-dependent peptidase activity	8.14E-03
52	GO:0008514: organic anion transmembrane transporter activity	9.77E-03
53	GO:0004812: aminoacyl-tRNA ligase activity	1.03E-02
54	GO:0003713: transcription coactivator activity	1.15E-02
55	GO:0008080: N-acetyltransferase activity	1.15E-02
56	GO:0010181: FMN binding	1.21E-02
57	GO:0048038: quinone binding	1.34E-02
58	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.34E-02
59	GO:0008237: metallopeptidase activity	1.60E-02
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.94E-02
61	GO:0008236: serine-type peptidase activity	2.02E-02
62	GO:0005096: GTPase activator activity	2.17E-02
63	GO:0004222: metalloendopeptidase activity	2.24E-02
64	GO:0003697: single-stranded DNA binding	2.48E-02
65	GO:0051539: 4 iron, 4 sulfur cluster binding	2.72E-02
66	GO:0004185: serine-type carboxypeptidase activity	2.97E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
68	GO:0035091: phosphatidylinositol binding	3.14E-02
69	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.67E-02
70	GO:0003690: double-stranded DNA binding	3.76E-02
71	GO:0003777: microtubule motor activity	3.95E-02
72	GO:0008234: cysteine-type peptidase activity	3.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	5.57E-05
3	GO:0005845: mRNA cap binding complex	1.35E-04
4	GO:0005846: nuclear cap binding complex	3.11E-04
5	GO:0016605: PML body	5.13E-04
6	GO:0031969: chloroplast membrane	7.07E-04
7	GO:0030286: dynein complex	9.73E-04
8	GO:0009517: PSII associated light-harvesting complex II	9.73E-04
9	GO:0055035: plastid thylakoid membrane	1.23E-03
10	GO:0030140: trans-Golgi network transport vesicle	1.51E-03
11	GO:0005655: nucleolar ribonuclease P complex	1.81E-03
12	GO:0000123: histone acetyltransferase complex	2.12E-03
13	GO:0046930: pore complex	2.81E-03
14	GO:0005811: lipid particle	2.81E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.17E-03
16	GO:0016604: nuclear body	3.55E-03
17	GO:0048471: perinuclear region of cytoplasm	4.36E-03
18	GO:0000419: DNA-directed RNA polymerase V complex	6.62E-03
19	GO:0005875: microtubule associated complex	6.62E-03
20	GO:0042651: thylakoid membrane	7.62E-03
21	GO:0015935: small ribosomal subunit	8.14E-03
22	GO:0009535: chloroplast thylakoid membrane	9.07E-03
23	GO:0009536: plastid	1.20E-02
24	GO:0019005: SCF ubiquitin ligase complex	2.09E-02
25	GO:0009707: chloroplast outer membrane	2.09E-02
26	GO:0005819: spindle	2.64E-02
27	GO:0031966: mitochondrial membrane	3.49E-02
28	GO:0043231: intracellular membrane-bounded organelle	3.59E-02
29	GO:0005773: vacuole	3.91E-02
30	GO:0009505: plant-type cell wall	4.37E-02