GO Enrichment Analysis of Co-expressed Genes with
AT5G49940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 2 | GO:0006720: isoprenoid metabolic process | 0.00E+00 |
| 3 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 4 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 4.88E-05 |
| 5 | GO:0097502: mannosylation | 4.88E-05 |
| 6 | GO:0016487: farnesol metabolic process | 4.88E-05 |
| 7 | GO:0016031: tRNA import into mitochondrion | 4.88E-05 |
| 8 | GO:0006285: base-excision repair, AP site formation | 4.88E-05 |
| 9 | GO:0016122: xanthophyll metabolic process | 1.20E-04 |
| 10 | GO:0010343: singlet oxygen-mediated programmed cell death | 1.20E-04 |
| 11 | GO:2000071: regulation of defense response by callose deposition | 1.20E-04 |
| 12 | GO:0006501: C-terminal protein lipidation | 1.20E-04 |
| 13 | GO:0006760: folic acid-containing compound metabolic process | 2.06E-04 |
| 14 | GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion | 2.06E-04 |
| 15 | GO:0009399: nitrogen fixation | 3.01E-04 |
| 16 | GO:0009963: positive regulation of flavonoid biosynthetic process | 3.01E-04 |
| 17 | GO:0009647: skotomorphogenesis | 3.01E-04 |
| 18 | GO:0042594: response to starvation | 4.04E-04 |
| 19 | GO:0044804: nucleophagy | 4.04E-04 |
| 20 | GO:0006542: glutamine biosynthetic process | 4.04E-04 |
| 21 | GO:0070534: protein K63-linked ubiquitination | 4.04E-04 |
| 22 | GO:0009649: entrainment of circadian clock | 4.04E-04 |
| 23 | GO:0010117: photoprotection | 5.13E-04 |
| 24 | GO:0046283: anthocyanin-containing compound metabolic process | 5.13E-04 |
| 25 | GO:0009229: thiamine diphosphate biosynthetic process | 5.13E-04 |
| 26 | GO:0000304: response to singlet oxygen | 5.13E-04 |
| 27 | GO:0000422: mitophagy | 5.13E-04 |
| 28 | GO:0010190: cytochrome b6f complex assembly | 6.29E-04 |
| 29 | GO:0033365: protein localization to organelle | 6.29E-04 |
| 30 | GO:0009117: nucleotide metabolic process | 6.29E-04 |
| 31 | GO:0006301: postreplication repair | 6.29E-04 |
| 32 | GO:0009228: thiamine biosynthetic process | 6.29E-04 |
| 33 | GO:0000045: autophagosome assembly | 6.29E-04 |
| 34 | GO:0080036: regulation of cytokinin-activated signaling pathway | 7.50E-04 |
| 35 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 7.50E-04 |
| 36 | GO:0009704: de-etiolation | 1.01E-03 |
| 37 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.01E-03 |
| 38 | GO:0019430: removal of superoxide radicals | 1.14E-03 |
| 39 | GO:0006535: cysteine biosynthetic process from serine | 1.59E-03 |
| 40 | GO:0000103: sulfate assimilation | 1.59E-03 |
| 41 | GO:0009688: abscisic acid biosynthetic process | 1.59E-03 |
| 42 | GO:0009641: shade avoidance | 1.59E-03 |
| 43 | GO:0006995: cellular response to nitrogen starvation | 1.59E-03 |
| 44 | GO:0009682: induced systemic resistance | 1.75E-03 |
| 45 | GO:0048440: carpel development | 2.26E-03 |
| 46 | GO:0019344: cysteine biosynthetic process | 2.81E-03 |
| 47 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 3.41E-03 |
| 48 | GO:0007005: mitochondrion organization | 3.41E-03 |
| 49 | GO:0006284: base-excision repair | 3.82E-03 |
| 50 | GO:0010118: stomatal movement | 4.26E-03 |
| 51 | GO:0008654: phospholipid biosynthetic process | 4.94E-03 |
| 52 | GO:0002229: defense response to oomycetes | 5.18E-03 |
| 53 | GO:0030163: protein catabolic process | 5.66E-03 |
| 54 | GO:0006914: autophagy | 5.91E-03 |
| 55 | GO:0016126: sterol biosynthetic process | 6.67E-03 |
| 56 | GO:0042128: nitrate assimilation | 7.20E-03 |
| 57 | GO:0048573: photoperiodism, flowering | 7.48E-03 |
| 58 | GO:0000160: phosphorelay signal transduction system | 8.31E-03 |
| 59 | GO:0010043: response to zinc ion | 8.88E-03 |
| 60 | GO:0048527: lateral root development | 8.88E-03 |
| 61 | GO:0010119: regulation of stomatal movement | 8.88E-03 |
| 62 | GO:0008152: metabolic process | 9.16E-03 |
| 63 | GO:0009853: photorespiration | 9.47E-03 |
| 64 | GO:0009867: jasmonic acid mediated signaling pathway | 9.47E-03 |
| 65 | GO:0009640: photomorphogenesis | 1.13E-02 |
| 66 | GO:0031347: regulation of defense response | 1.30E-02 |
| 67 | GO:0009736: cytokinin-activated signaling pathway | 1.40E-02 |
| 68 | GO:0006486: protein glycosylation | 1.40E-02 |
| 69 | GO:0009585: red, far-red light phototransduction | 1.40E-02 |
| 70 | GO:0010224: response to UV-B | 1.43E-02 |
| 71 | GO:0006417: regulation of translation | 1.50E-02 |
| 72 | GO:0009620: response to fungus | 1.68E-02 |
| 73 | GO:0016569: covalent chromatin modification | 1.72E-02 |
| 74 | GO:0016310: phosphorylation | 1.84E-02 |
| 75 | GO:0006457: protein folding | 1.92E-02 |
| 76 | GO:0040008: regulation of growth | 2.56E-02 |
| 77 | GO:0010150: leaf senescence | 2.65E-02 |
| 78 | GO:0009651: response to salt stress | 2.72E-02 |
| 79 | GO:0055114: oxidation-reduction process | 2.83E-02 |
| 80 | GO:0042742: defense response to bacterium | 3.00E-02 |
| 81 | GO:0009658: chloroplast organization | 3.61E-02 |
| 82 | GO:0015031: protein transport | 3.81E-02 |
| 83 | GO:0006970: response to osmotic stress | 3.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008972: phosphomethylpyrimidine kinase activity | 0.00E+00 |
| 2 | GO:0047710: bis(5'-adenosyl)-triphosphatase activity | 0.00E+00 |
| 3 | GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity | 0.00E+00 |
| 4 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 5 | GO:0052670: geraniol kinase activity | 0.00E+00 |
| 6 | GO:0052668: farnesol kinase activity | 0.00E+00 |
| 7 | GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity | 0.00E+00 |
| 8 | GO:0043530: adenosine 5'-monophosphoramidase activity | 0.00E+00 |
| 9 | GO:0000033: alpha-1,3-mannosyltransferase activity | 0.00E+00 |
| 10 | GO:0052671: geranylgeraniol kinase activity | 0.00E+00 |
| 11 | GO:0004789: thiamine-phosphate diphosphorylase activity | 0.00E+00 |
| 12 | GO:0008902: hydroxymethylpyrimidine kinase activity | 0.00E+00 |
| 13 | GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity | 4.88E-05 |
| 14 | GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity | 4.88E-05 |
| 15 | GO:0047627: adenylylsulfatase activity | 3.01E-04 |
| 16 | GO:0009001: serine O-acetyltransferase activity | 3.01E-04 |
| 17 | GO:0000254: C-4 methylsterol oxidase activity | 3.01E-04 |
| 18 | GO:0019776: Atg8 ligase activity | 4.04E-04 |
| 19 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 4.04E-04 |
| 20 | GO:0019104: DNA N-glycosylase activity | 4.04E-04 |
| 21 | GO:0005496: steroid binding | 5.13E-04 |
| 22 | GO:0004356: glutamate-ammonia ligase activity | 5.13E-04 |
| 23 | GO:0016407: acetyltransferase activity | 5.13E-04 |
| 24 | GO:0004605: phosphatidate cytidylyltransferase activity | 6.29E-04 |
| 25 | GO:0004784: superoxide dismutase activity | 6.29E-04 |
| 26 | GO:0070300: phosphatidic acid binding | 7.50E-04 |
| 27 | GO:0009927: histidine phosphotransfer kinase activity | 7.50E-04 |
| 28 | GO:0035064: methylated histone binding | 1.01E-03 |
| 29 | GO:0071949: FAD binding | 1.28E-03 |
| 30 | GO:0016491: oxidoreductase activity | 1.66E-03 |
| 31 | GO:0015266: protein channel activity | 2.08E-03 |
| 32 | GO:0043424: protein histidine kinase binding | 3.01E-03 |
| 33 | GO:0048038: quinone binding | 5.18E-03 |
| 34 | GO:0008233: peptidase activity | 5.54E-03 |
| 35 | GO:0016597: amino acid binding | 6.42E-03 |
| 36 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.03E-03 |
| 37 | GO:0043621: protein self-association | 1.20E-02 |
| 38 | GO:0031625: ubiquitin protein ligase binding | 1.50E-02 |
| 39 | GO:0016787: hydrolase activity | 1.55E-02 |
| 40 | GO:0051082: unfolded protein binding | 1.79E-02 |
| 41 | GO:0004386: helicase activity | 1.91E-02 |
| 42 | GO:0005507: copper ion binding | 2.11E-02 |
| 43 | GO:0042802: identical protein binding | 3.14E-02 |
| 44 | GO:0003824: catalytic activity | 3.29E-02 |
| 45 | GO:0004601: peroxidase activity | 3.61E-02 |
| 46 | GO:0004842: ubiquitin-protein transferase activity | 4.14E-02 |
| 47 | GO:0061630: ubiquitin protein ligase activity | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000152: nuclear ubiquitin ligase complex | 4.88E-05 |
| 2 | GO:0034274: Atg12-Atg5-Atg16 complex | 1.20E-04 |
| 3 | GO:0042651: thylakoid membrane | 1.33E-04 |
| 4 | GO:0009507: chloroplast | 3.61E-04 |
| 5 | GO:0031372: UBC13-MMS2 complex | 4.04E-04 |
| 6 | GO:0009517: PSII associated light-harvesting complex II | 4.04E-04 |
| 7 | GO:0034045: pre-autophagosomal structure membrane | 1.14E-03 |
| 8 | GO:0042644: chloroplast nucleoid | 1.28E-03 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.28E-03 |
| 10 | GO:0016604: nuclear body | 1.43E-03 |
| 11 | GO:0005747: mitochondrial respiratory chain complex I | 1.49E-03 |
| 12 | GO:0005759: mitochondrial matrix | 2.70E-03 |
| 13 | GO:0009941: chloroplast envelope | 2.96E-03 |
| 14 | GO:0045271: respiratory chain complex I | 3.01E-03 |
| 15 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 3.82E-03 |
| 16 | GO:0031969: chloroplast membrane | 5.63E-03 |
| 17 | GO:0005643: nuclear pore | 8.03E-03 |
| 18 | GO:0031966: mitochondrial membrane | 1.33E-02 |
| 19 | GO:0016607: nuclear speck | 1.61E-02 |
| 20 | GO:0009535: chloroplast thylakoid membrane | 1.64E-02 |
| 21 | GO:0005829: cytosol | 1.71E-02 |
| 22 | GO:0012505: endomembrane system | 1.76E-02 |
| 23 | GO:0009570: chloroplast stroma | 1.88E-02 |
| 24 | GO:0005840: ribosome | 3.14E-02 |
| 25 | GO:0009536: plastid | 3.68E-02 |
| 26 | GO:0005739: mitochondrion | 3.79E-02 |
| 27 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.86E-02 |
| 28 | GO:0005737: cytoplasm | 4.20E-02 |
| 29 | GO:0005789: endoplasmic reticulum membrane | 4.56E-02 |