Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G49730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0015810: aspartate transport0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0042493: response to drug0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0015827: tryptophan transport0.00E+00
12GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
13GO:0015979: photosynthesis4.94E-16
14GO:0018298: protein-chromophore linkage1.24E-15
15GO:0009768: photosynthesis, light harvesting in photosystem I2.20E-11
16GO:0010114: response to red light4.26E-08
17GO:0009645: response to low light intensity stimulus4.61E-08
18GO:0009644: response to high light intensity5.69E-08
19GO:0019253: reductive pentose-phosphate cycle1.84E-06
20GO:0042853: L-alanine catabolic process4.08E-06
21GO:0009769: photosynthesis, light harvesting in photosystem II5.18E-06
22GO:0010218: response to far red light7.39E-06
23GO:0009637: response to blue light1.05E-05
24GO:0090391: granum assembly1.46E-05
25GO:0005977: glycogen metabolic process1.46E-05
26GO:0019252: starch biosynthetic process2.40E-05
27GO:0071484: cellular response to light intensity3.26E-05
28GO:0007623: circadian rhythm3.46E-05
29GO:0009773: photosynthetic electron transport in photosystem I3.52E-05
30GO:0055114: oxidation-reduction process4.84E-05
31GO:0009765: photosynthesis, light harvesting5.85E-05
32GO:0006021: inositol biosynthetic process5.85E-05
33GO:0010021: amylopectin biosynthetic process5.85E-05
34GO:0010207: photosystem II assembly6.59E-05
35GO:0009269: response to desiccation1.46E-04
36GO:0010196: nonphotochemical quenching2.39E-04
37GO:0010362: negative regulation of anion channel activity by blue light2.99E-04
38GO:0009443: pyridoxal 5'-phosphate salvage2.99E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process2.99E-04
40GO:0033388: putrescine biosynthetic process from arginine2.99E-04
41GO:0000481: maturation of 5S rRNA2.99E-04
42GO:1904964: positive regulation of phytol biosynthetic process2.99E-04
43GO:0051775: response to redox state2.99E-04
44GO:0071277: cellular response to calcium ion2.99E-04
45GO:0010028: xanthophyll cycle2.99E-04
46GO:0034337: RNA folding2.99E-04
47GO:0030091: protein repair3.02E-04
48GO:0009642: response to light intensity3.02E-04
49GO:0048564: photosystem I assembly3.02E-04
50GO:0010206: photosystem II repair4.46E-04
51GO:0090333: regulation of stomatal closure4.46E-04
52GO:0009638: phototropism5.28E-04
53GO:0010205: photoinhibition5.28E-04
54GO:0035304: regulation of protein dephosphorylation6.55E-04
55GO:0009629: response to gravity6.55E-04
56GO:1902326: positive regulation of chlorophyll biosynthetic process6.55E-04
57GO:0030187: melatonin biosynthetic process6.55E-04
58GO:0006432: phenylalanyl-tRNA aminoacylation6.55E-04
59GO:0000256: allantoin catabolic process6.55E-04
60GO:0042548: regulation of photosynthesis, light reaction6.55E-04
61GO:0006435: threonyl-tRNA aminoacylation6.55E-04
62GO:0009446: putrescine biosynthetic process6.55E-04
63GO:0010155: regulation of proton transport6.55E-04
64GO:0006729: tetrahydrobiopterin biosynthetic process6.55E-04
65GO:0030388: fructose 1,6-bisphosphate metabolic process6.55E-04
66GO:0080181: lateral root branching6.55E-04
67GO:0018119: peptidyl-cysteine S-nitrosylation7.11E-04
68GO:0015995: chlorophyll biosynthetic process7.66E-04
69GO:0080167: response to karrikin8.73E-04
70GO:0006006: glucose metabolic process9.19E-04
71GO:0006094: gluconeogenesis9.19E-04
72GO:0009409: response to cold9.88E-04
73GO:1902448: positive regulation of shade avoidance1.06E-03
74GO:0006000: fructose metabolic process1.06E-03
75GO:0010136: ureide catabolic process1.06E-03
76GO:0009405: pathogenesis1.06E-03
77GO:0090351: seedling development1.15E-03
78GO:0009853: photorespiration1.17E-03
79GO:0009416: response to light stimulus1.28E-03
80GO:0006107: oxaloacetate metabolic process1.52E-03
81GO:0009650: UV protection1.52E-03
82GO:0006145: purine nucleobase catabolic process1.52E-03
83GO:0046739: transport of virus in multicellular host1.52E-03
84GO:0051016: barbed-end actin filament capping1.52E-03
85GO:0042989: sequestering of actin monomers1.52E-03
86GO:0042823: pyridoxal phosphate biosynthetic process1.52E-03
87GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.52E-03
88GO:0009067: aspartate family amino acid biosynthetic process1.52E-03
89GO:0006020: inositol metabolic process1.52E-03
90GO:0030104: water homeostasis2.04E-03
91GO:0015994: chlorophyll metabolic process2.04E-03
92GO:0006734: NADH metabolic process2.04E-03
93GO:0009902: chloroplast relocation2.04E-03
94GO:0015976: carbon utilization2.04E-03
95GO:0006545: glycine biosynthetic process2.04E-03
96GO:0016558: protein import into peroxisome matrix2.61E-03
97GO:0030041: actin filament polymerization2.61E-03
98GO:0010117: photoprotection2.61E-03
99GO:0006564: L-serine biosynthetic process2.61E-03
100GO:0009904: chloroplast accumulation movement2.61E-03
101GO:0006656: phosphatidylcholine biosynthetic process2.61E-03
102GO:0043097: pyrimidine nucleoside salvage2.61E-03
103GO:0016123: xanthophyll biosynthetic process2.61E-03
104GO:0009658: chloroplast organization2.82E-03
105GO:0006096: glycolytic process2.90E-03
106GO:0006206: pyrimidine nucleobase metabolic process3.22E-03
107GO:0009643: photosynthetic acclimation3.22E-03
108GO:0000741: karyogamy3.22E-03
109GO:0050665: hydrogen peroxide biosynthetic process3.22E-03
110GO:0046855: inositol phosphate dephosphorylation3.22E-03
111GO:0042549: photosystem II stabilization3.22E-03
112GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.22E-03
113GO:0008654: phospholipid biosynthetic process3.24E-03
114GO:0009793: embryo development ending in seed dormancy3.54E-03
115GO:0071470: cellular response to osmotic stress3.87E-03
116GO:0009903: chloroplast avoidance movement3.87E-03
117GO:0010189: vitamin E biosynthetic process3.87E-03
118GO:0009854: oxidative photosynthetic carbon pathway3.87E-03
119GO:0009088: threonine biosynthetic process3.87E-03
120GO:0005975: carbohydrate metabolic process3.95E-03
121GO:1900057: positive regulation of leaf senescence4.57E-03
122GO:0051510: regulation of unidimensional cell growth4.57E-03
123GO:0009058: biosynthetic process5.23E-03
124GO:0009704: de-etiolation5.30E-03
125GO:0032508: DNA duplex unwinding5.30E-03
126GO:0031540: regulation of anthocyanin biosynthetic process5.30E-03
127GO:0016559: peroxisome fission5.30E-03
128GO:0071482: cellular response to light stimulus6.08E-03
129GO:0009657: plastid organization6.08E-03
130GO:0006002: fructose 6-phosphate metabolic process6.08E-03
131GO:0009821: alkaloid biosynthetic process6.89E-03
132GO:0006098: pentose-phosphate shunt6.89E-03
133GO:0000373: Group II intron splicing6.89E-03
134GO:0098656: anion transmembrane transport6.89E-03
135GO:0009688: abscisic acid biosynthetic process8.62E-03
136GO:0009641: shade avoidance8.62E-03
137GO:0006949: syncytium formation8.62E-03
138GO:0034599: cellular response to oxidative stress8.66E-03
139GO:0019684: photosynthesis, light reaction9.55E-03
140GO:0009089: lysine biosynthetic process via diaminopimelate9.55E-03
141GO:0043085: positive regulation of catalytic activity9.55E-03
142GO:0009750: response to fructose9.55E-03
143GO:0006790: sulfur compound metabolic process1.05E-02
144GO:0009744: response to sucrose1.07E-02
145GO:0009785: blue light signaling pathway1.15E-02
146GO:0006108: malate metabolic process1.15E-02
147GO:0006807: nitrogen compound metabolic process1.15E-02
148GO:0005986: sucrose biosynthetic process1.15E-02
149GO:0010020: chloroplast fission1.25E-02
150GO:0010223: secondary shoot formation1.25E-02
151GO:0010030: positive regulation of seed germination1.36E-02
152GO:0046854: phosphatidylinositol phosphorylation1.36E-02
153GO:0009585: red, far-red light phototransduction1.45E-02
154GO:0009735: response to cytokinin1.47E-02
155GO:0006833: water transport1.47E-02
156GO:0010224: response to UV-B1.50E-02
157GO:0080147: root hair cell development1.58E-02
158GO:0009863: salicylic acid mediated signaling pathway1.58E-02
159GO:0007010: cytoskeleton organization1.58E-02
160GO:0042742: defense response to bacterium1.61E-02
161GO:0007017: microtubule-based process1.69E-02
162GO:0006730: one-carbon metabolic process1.93E-02
163GO:0019748: secondary metabolic process1.93E-02
164GO:0009733: response to auxin1.96E-02
165GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.05E-02
166GO:0071215: cellular response to abscisic acid stimulus2.05E-02
167GO:0009411: response to UV2.05E-02
168GO:0045454: cell redox homeostasis2.12E-02
169GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.31E-02
170GO:0042631: cellular response to water deprivation2.44E-02
171GO:0034220: ion transmembrane transport2.44E-02
172GO:0006606: protein import into nucleus2.44E-02
173GO:0006662: glycerol ether metabolic process2.57E-02
174GO:0010197: polar nucleus fusion2.57E-02
175GO:0010182: sugar mediated signaling pathway2.57E-02
176GO:0048868: pollen tube development2.57E-02
177GO:0009845: seed germination2.80E-02
178GO:0009791: post-embryonic development2.85E-02
179GO:0009749: response to glucose2.85E-02
180GO:0071554: cell wall organization or biogenesis2.99E-02
181GO:0010193: response to ozone2.99E-02
182GO:0006635: fatty acid beta-oxidation2.99E-02
183GO:0006810: transport3.08E-02
184GO:0016032: viral process3.13E-02
185GO:0006413: translational initiation3.32E-02
186GO:0046686: response to cadmium ion3.40E-02
187GO:0009828: plant-type cell wall loosening3.42E-02
188GO:0009451: RNA modification3.64E-02
189GO:0051607: defense response to virus3.73E-02
190GO:0001666: response to hypoxia3.88E-02
191GO:0010027: thylakoid membrane organization3.88E-02
192GO:0009627: systemic acquired resistance4.20E-02
193GO:0010411: xyloglucan metabolic process4.36E-02
194GO:0048573: photoperiodism, flowering4.36E-02
195GO:0016311: dephosphorylation4.52E-02
196GO:0009817: defense response to fungus, incompatible interaction4.69E-02
197GO:0006979: response to oxidative stress4.78E-02
198GO:0009813: flavonoid biosynthetic process4.85E-02
199GO:0000160: phosphorelay signal transduction system4.85E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0047958: glycine:2-oxoglutarate aminotransferase activity0.00E+00
6GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
7GO:0010276: phytol kinase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0008974: phosphoribulokinase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0042623: ATPase activity, coupled0.00E+00
14GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
15GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
16GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
17GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
18GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
19GO:0050281: serine-glyoxylate transaminase activity0.00E+00
20GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
21GO:0016168: chlorophyll binding1.33E-12
22GO:0031409: pigment binding9.28E-12
23GO:0008453: alanine-glyoxylate transaminase activity4.23E-07
24GO:0019156: isoamylase activity4.08E-06
25GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.08E-06
26GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity3.26E-05
27GO:0004556: alpha-amylase activity1.34E-04
28GO:0004462: lactoylglutathione lyase activity1.34E-04
29GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.83E-04
30GO:0004451: isocitrate lyase activity2.99E-04
31GO:0010242: oxygen evolving activity2.99E-04
32GO:0008746: NAD(P)+ transhydrogenase activity2.99E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.99E-04
34GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.99E-04
35GO:0035671: enone reductase activity2.99E-04
36GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.99E-04
37GO:0042802: identical protein binding4.19E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.55E-04
39GO:0004829: threonine-tRNA ligase activity6.55E-04
40GO:0019172: glyoxalase III activity6.55E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity6.55E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity6.55E-04
43GO:0004826: phenylalanine-tRNA ligase activity6.55E-04
44GO:0000234: phosphoethanolamine N-methyltransferase activity6.55E-04
45GO:0004512: inositol-3-phosphate synthase activity6.55E-04
46GO:0015172: acidic amino acid transmembrane transporter activity6.55E-04
47GO:0047746: chlorophyllase activity6.55E-04
48GO:0004617: phosphoglycerate dehydrogenase activity6.55E-04
49GO:0052832: inositol monophosphate 3-phosphatase activity6.55E-04
50GO:0004089: carbonate dehydratase activity9.19E-04
51GO:0010277: chlorophyllide a oxygenase [overall] activity1.06E-03
52GO:0004373: glycogen (starch) synthase activity1.06E-03
53GO:0003913: DNA photolyase activity1.06E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.06E-03
55GO:0070402: NADPH binding1.06E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.06E-03
57GO:0004072: aspartate kinase activity1.52E-03
58GO:0015175: neutral amino acid transmembrane transporter activity1.52E-03
59GO:0004792: thiosulfate sulfurtransferase activity1.52E-03
60GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.52E-03
61GO:0009882: blue light photoreceptor activity1.52E-03
62GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.52E-03
63GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.52E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.04E-03
65GO:0009011: starch synthase activity2.04E-03
66GO:0043495: protein anchor2.04E-03
67GO:0008891: glycolate oxidase activity2.04E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.04E-03
69GO:0022891: substrate-specific transmembrane transporter activity2.05E-03
70GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.61E-03
71GO:0003785: actin monomer binding2.61E-03
72GO:0010181: FMN binding3.02E-03
73GO:0042578: phosphoric ester hydrolase activity3.22E-03
74GO:0016615: malate dehydrogenase activity3.22E-03
75GO:0004605: phosphatidate cytidylyltransferase activity3.22E-03
76GO:0004332: fructose-bisphosphate aldolase activity3.22E-03
77GO:0004849: uridine kinase activity3.87E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.87E-03
79GO:0030060: L-malate dehydrogenase activity3.87E-03
80GO:0009881: photoreceptor activity4.57E-03
81GO:0019899: enzyme binding4.57E-03
82GO:0016597: amino acid binding4.72E-03
83GO:0004033: aldo-keto reductase (NADP) activity5.30E-03
84GO:0008135: translation factor activity, RNA binding6.08E-03
85GO:0071949: FAD binding6.89E-03
86GO:0016844: strictosidine synthase activity7.74E-03
87GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.74E-03
88GO:0003746: translation elongation factor activity8.28E-03
89GO:0008047: enzyme activator activity8.62E-03
90GO:0005089: Rho guanyl-nucleotide exchange factor activity9.55E-03
91GO:0000049: tRNA binding1.05E-02
92GO:0004565: beta-galactosidase activity1.15E-02
93GO:0008081: phosphoric diester hydrolase activity1.15E-02
94GO:0005315: inorganic phosphate transmembrane transporter activity1.15E-02
95GO:0000155: phosphorelay sensor kinase activity1.15E-02
96GO:0005198: structural molecule activity1.20E-02
97GO:0008266: poly(U) RNA binding1.25E-02
98GO:0051287: NAD binding1.30E-02
99GO:0003712: transcription cofactor activity1.36E-02
100GO:0003954: NADH dehydrogenase activity1.58E-02
101GO:0046872: metal ion binding1.85E-02
102GO:0003779: actin binding2.00E-02
103GO:0003727: single-stranded RNA binding2.18E-02
104GO:0008514: organic anion transmembrane transporter activity2.18E-02
105GO:0047134: protein-disulfide reductase activity2.31E-02
106GO:0008080: N-acetyltransferase activity2.57E-02
107GO:0016491: oxidoreductase activity2.57E-02
108GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.65E-02
109GO:0004791: thioredoxin-disulfide reductase activity2.71E-02
110GO:0016853: isomerase activity2.71E-02
111GO:0003924: GTPase activity2.76E-02
112GO:0030170: pyridoxal phosphate binding2.87E-02
113GO:0048038: quinone binding2.99E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity2.99E-02
115GO:0009055: electron carrier activity3.01E-02
116GO:0004519: endonuclease activity3.07E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.28E-02
118GO:0016413: O-acetyltransferase activity3.73E-02
119GO:0015250: water channel activity3.88E-02
120GO:0005509: calcium ion binding4.22E-02
121GO:0016798: hydrolase activity, acting on glycosyl bonds4.36E-02
122GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.52E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast5.75E-50
3GO:0009535: chloroplast thylakoid membrane3.66E-40
4GO:0009579: thylakoid3.05E-24
5GO:0009534: chloroplast thylakoid3.45E-24
6GO:0009941: chloroplast envelope3.89E-23
7GO:0009570: chloroplast stroma6.17E-20
8GO:0010287: plastoglobule2.62E-15
9GO:0009543: chloroplast thylakoid lumen1.04E-10
10GO:0030095: chloroplast photosystem II3.64E-10
11GO:0009523: photosystem II4.40E-10
12GO:0009522: photosystem I1.71E-08
13GO:0031977: thylakoid lumen3.15E-08
14GO:0030076: light-harvesting complex4.23E-08
15GO:0009517: PSII associated light-harvesting complex II4.23E-07
16GO:0048046: apoplast4.50E-07
17GO:0009654: photosystem II oxygen evolving complex4.92E-06
18GO:0009538: photosystem I reaction center7.85E-06
19GO:0019898: extrinsic component of membrane2.40E-05
20GO:0042651: thylakoid membrane1.27E-04
21GO:0009782: photosystem I antenna complex2.99E-04
22GO:0009783: photosystem II antenna complex2.99E-04
23GO:0009515: granal stacked thylakoid2.99E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.46E-04
25GO:0010319: stromule5.37E-04
26GO:0031304: intrinsic component of mitochondrial inner membrane6.55E-04
27GO:0009569: chloroplast starch grain6.55E-04
28GO:0008290: F-actin capping protein complex6.55E-04
29GO:0031969: chloroplast membrane8.73E-04
30GO:0005777: peroxisome1.68E-03
31GO:0009898: cytoplasmic side of plasma membrane2.04E-03
32GO:0030286: dynein complex2.04E-03
33GO:0016020: membrane3.59E-03
34GO:0009706: chloroplast inner membrane3.68E-03
35GO:0009986: cell surface4.57E-03
36GO:0009533: chloroplast stromal thylakoid4.57E-03
37GO:0009707: chloroplast outer membrane6.53E-03
38GO:0005759: mitochondrial matrix6.54E-03
39GO:0008180: COP9 signalosome6.89E-03
40GO:0032040: small-subunit processome1.05E-02
41GO:0005938: cell cortex1.15E-02
42GO:0015629: actin cytoskeleton2.05E-02
43GO:0005623: cell2.65E-02
44GO:0005778: peroxisomal membrane3.58E-02
45GO:0019005: SCF ubiquitin ligase complex4.69E-02
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Gene type



Gene DE type