co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G49555

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0015882: L-ascorbic acid transport	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0019447: D-cysteine catabolic process	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0070125: mitochondrial translational elongation	0.00E+00
9	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
10	GO:0015979: photosynthesis	2.15E-09
11	GO:0009642: response to light intensity	1.06E-06
12	GO:0018298: protein-chromophore linkage	1.01E-05
13	GO:0009768: photosynthesis, light harvesting in photosystem I	2.19E-05
14	GO:0010196: nonphotochemical quenching	6.86E-05
15	GO:0048564: photosystem I assembly	8.88E-05
16	GO:0006419: alanyl-tRNA aminoacylation	1.33E-04
17	GO:0033388: putrescine biosynthetic process from arginine	1.33E-04
18	GO:0000481: maturation of 5S rRNA	1.33E-04
19	GO:0043686: co-translational protein modification	1.33E-04
20	GO:0043007: maintenance of rDNA	1.33E-04
21	GO:0010028: xanthophyll cycle	1.33E-04
22	GO:0034337: RNA folding	1.33E-04
23	GO:0010206: photosystem II repair	1.37E-04
24	GO:0009773: photosynthetic electron transport in photosystem I	2.29E-04
25	GO:0043085: positive regulation of catalytic activity	2.29E-04
26	GO:0009853: photorespiration	2.73E-04
27	GO:0034599: cellular response to oxidative stress	2.90E-04
28	GO:0042853: L-alanine catabolic process	3.07E-04
29	GO:0035304: regulation of protein dephosphorylation	3.07E-04
30	GO:0009629: response to gravity	3.07E-04
31	GO:0006435: threonyl-tRNA aminoacylation	3.07E-04
32	GO:0030187: melatonin biosynthetic process	3.07E-04
33	GO:0006432: phenylalanyl-tRNA aminoacylation	3.07E-04
34	GO:0000256: allantoin catabolic process	3.07E-04
35	GO:0009446: putrescine biosynthetic process	3.07E-04
36	GO:0097054: L-glutamate biosynthetic process	3.07E-04
37	GO:0006729: tetrahydrobiopterin biosynthetic process	3.07E-04
38	GO:0010207: photosystem II assembly	3.42E-04
39	GO:0010114: response to red light	3.83E-04
40	GO:0009658: chloroplast organization	4.93E-04
41	GO:0009405: pathogenesis	5.06E-04
42	GO:0090391: granum assembly	5.06E-04
43	GO:0010136: ureide catabolic process	5.06E-04
44	GO:0006433: prolyl-tRNA aminoacylation	5.06E-04
45	GO:0071492: cellular response to UV-A	5.06E-04
46	GO:0005977: glycogen metabolic process	5.06E-04
47	GO:0055114: oxidation-reduction process	6.86E-04
48	GO:0006145: purine nucleobase catabolic process	7.24E-04
49	GO:0051016: barbed-end actin filament capping	7.24E-04
50	GO:0042989: sequestering of actin monomers	7.24E-04
51	GO:0006537: glutamate biosynthetic process	7.24E-04
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.24E-04
53	GO:0046739: transport of virus in multicellular host	7.24E-04
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.24E-04
55	GO:0006020: inositol metabolic process	7.24E-04
56	GO:0009793: embryo development ending in seed dormancy	7.78E-04
57	GO:0006662: glycerol ether metabolic process	9.22E-04
58	GO:0009765: photosynthesis, light harvesting	9.59E-04
59	GO:0006109: regulation of carbohydrate metabolic process	9.59E-04
60	GO:0015994: chlorophyll metabolic process	9.59E-04
61	GO:0006021: inositol biosynthetic process	9.59E-04
62	GO:0010021: amylopectin biosynthetic process	9.59E-04
63	GO:0010109: regulation of photosynthesis	9.59E-04
64	GO:0019676: ammonia assimilation cycle	9.59E-04
65	GO:0071486: cellular response to high light intensity	9.59E-04
66	GO:0006656: phosphatidylcholine biosynthetic process	1.21E-03
67	GO:0016558: protein import into peroxisome matrix	1.21E-03
68	GO:0030041: actin filament polymerization	1.21E-03
69	GO:0031365: N-terminal protein amino acid modification	1.21E-03
70	GO:0016123: xanthophyll biosynthetic process	1.21E-03
71	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.49E-03
72	GO:0046855: inositol phosphate dephosphorylation	1.49E-03
73	GO:0042549: photosystem II stabilization	1.49E-03
74	GO:0006413: translational initiation	1.57E-03
75	GO:0010027: thylakoid membrane organization	1.61E-03
76	GO:0071470: cellular response to osmotic stress	1.78E-03
77	GO:0010189: vitamin E biosynthetic process	1.78E-03
78	GO:0009769: photosynthesis, light harvesting in photosystem II	2.09E-03
79	GO:1900057: positive regulation of leaf senescence	2.09E-03
80	GO:0009645: response to low light intensity stimulus	2.09E-03
81	GO:0006400: tRNA modification	2.09E-03
82	GO:0051510: regulation of unidimensional cell growth	2.09E-03
83	GO:0010218: response to far red light	2.30E-03
84	GO:0030091: protein repair	2.42E-03
85	GO:0032508: DNA duplex unwinding	2.42E-03
86	GO:0031540: regulation of anthocyanin biosynthetic process	2.42E-03
87	GO:0009231: riboflavin biosynthetic process	2.42E-03
88	GO:0009637: response to blue light	2.64E-03
89	GO:0017004: cytochrome complex assembly	2.77E-03
90	GO:0098656: anion transmembrane transport	3.13E-03
91	GO:0006098: pentose-phosphate shunt	3.13E-03
92	GO:0009821: alkaloid biosynthetic process	3.13E-03
93	GO:0010205: photoinhibition	3.50E-03
94	GO:0009644: response to high light intensity	3.67E-03
95	GO:0009688: abscisic acid biosynthetic process	3.89E-03
96	GO:0019684: photosynthesis, light reaction	4.30E-03
97	GO:0009073: aromatic amino acid family biosynthetic process	4.30E-03
98	GO:0046686: response to cadmium ion	4.65E-03
99	GO:0006790: sulfur compound metabolic process	4.72E-03
100	GO:0006807: nitrogen compound metabolic process	5.15E-03
101	GO:0006006: glucose metabolic process	5.15E-03
102	GO:0006094: gluconeogenesis	5.15E-03
103	GO:0006096: glycolytic process	5.39E-03
104	GO:0019253: reductive pentose-phosphate cycle	5.60E-03
105	GO:0090351: seedling development	6.06E-03
106	GO:0046854: phosphatidylinositol phosphorylation	6.06E-03
107	GO:0009553: embryo sac development	6.29E-03
108	GO:0007010: cytoskeleton organization	7.01E-03
109	GO:0008299: isoprenoid biosynthetic process	7.51E-03
110	GO:0006418: tRNA aminoacylation for protein translation	7.51E-03
111	GO:0009269: response to desiccation	8.02E-03
112	GO:0009058: biosynthetic process	8.56E-03
113	GO:0009845: seed germination	8.79E-03
114	GO:0009693: ethylene biosynthetic process	9.08E-03
115	GO:0006012: galactose metabolic process	9.08E-03
116	GO:0010182: sugar mediated signaling pathway	1.13E-02
117	GO:0048868: pollen tube development	1.13E-02
118	GO:0009791: post-embryonic development	1.25E-02
119	GO:0019252: starch biosynthetic process	1.25E-02
120	GO:0008654: phospholipid biosynthetic process	1.25E-02
121	GO:0071554: cell wall organization or biogenesis	1.32E-02
122	GO:0006635: fatty acid beta-oxidation	1.32E-02
123	GO:0009416: response to light stimulus	1.33E-02
124	GO:0016032: viral process	1.38E-02
125	GO:0005975: carbohydrate metabolic process	1.60E-02
126	GO:0015995: chlorophyll biosynthetic process	1.92E-02
127	GO:0016311: dephosphorylation	1.99E-02
128	GO:0009817: defense response to fungus, incompatible interaction	2.06E-02
129	GO:0048481: plant ovule development	2.06E-02
130	GO:0009813: flavonoid biosynthetic process	2.14E-02
131	GO:0006811: ion transport	2.21E-02
132	GO:0048527: lateral root development	2.29E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	2.44E-02
134	GO:0045454: cell redox homeostasis	2.59E-02
135	GO:0009926: auxin polar transport	2.92E-02
136	GO:0009744: response to sucrose	2.92E-02
137	GO:0032259: methylation	3.06E-02
138	GO:0006281: DNA repair	3.19E-02
139	GO:0009408: response to heat	3.19E-02
140	GO:0006979: response to oxidative stress	3.26E-02
141	GO:0006364: rRNA processing	3.62E-02
142	GO:0010224: response to UV-B	3.71E-02
143	GO:0043086: negative regulation of catalytic activity	4.07E-02
144	GO:0048316: seed development	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
2	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0042623: ATPase activity, coupled	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
8	GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity	0.00E+00
9	GO:0019148: D-cysteine desulfhydrase activity	0.00E+00
10	GO:0010276: phytol kinase activity	0.00E+00
11	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
12	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
13	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
14	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
15	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
16	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
17	GO:0016168: chlorophyll binding	6.41E-06
18	GO:0008453: alanine-glyoxylate transaminase activity	1.47E-05
19	GO:0031409: pigment binding	1.55E-05
20	GO:0004451: isocitrate lyase activity	1.33E-04
21	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	1.33E-04
22	GO:0004813: alanine-tRNA ligase activity	1.33E-04
23	GO:0010242: oxygen evolving activity	1.33E-04
24	GO:0047911: galacturan 1,4-alpha-galacturonidase activity	1.33E-04
25	GO:0042586: peptide deformylase activity	1.33E-04
26	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.33E-04
27	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.33E-04
28	GO:0016041: glutamate synthase (ferredoxin) activity	1.33E-04
29	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.33E-04
30	GO:0008047: enzyme activator activity	1.96E-04
31	GO:0000049: tRNA binding	2.64E-04
32	GO:0031072: heat shock protein binding	3.02E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	3.07E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	3.07E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	3.07E-04
36	GO:0004826: phenylalanine-tRNA ligase activity	3.07E-04
37	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.07E-04
38	GO:0004829: threonine-tRNA ligase activity	3.07E-04
39	GO:0019172: glyoxalase III activity	3.07E-04
40	GO:0019156: isoamylase activity	3.07E-04
41	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.07E-04
42	GO:0047746: chlorophyllase activity	3.07E-04
43	GO:0004827: proline-tRNA ligase activity	5.06E-04
44	GO:0003913: DNA photolyase activity	5.06E-04
45	GO:0004751: ribose-5-phosphate isomerase activity	5.06E-04
46	GO:0070402: NADPH binding	5.06E-04
47	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.06E-04
48	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	7.24E-04
49	GO:0047134: protein-disulfide reductase activity	7.98E-04
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.59E-04
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	9.59E-04
52	GO:0016853: isomerase activity	9.89E-04
53	GO:0004791: thioredoxin-disulfide reductase activity	9.89E-04
54	GO:0003785: actin monomer binding	1.21E-03
55	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.21E-03
56	GO:0051538: 3 iron, 4 sulfur cluster binding	1.21E-03
57	GO:0046872: metal ion binding	1.26E-03
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.28E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	1.49E-03
60	GO:0000293: ferric-chelate reductase activity	1.49E-03
61	GO:0004556: alpha-amylase activity	1.49E-03
62	GO:0004462: lactoylglutathione lyase activity	1.49E-03
63	GO:0004605: phosphatidate cytidylyltransferase activity	1.49E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.78E-03
65	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.78E-03
66	GO:0009881: photoreceptor activity	2.09E-03
67	GO:0004034: aldose 1-epimerase activity	2.42E-03
68	GO:0003746: translation elongation factor activity	2.64E-03
69	GO:0008135: translation factor activity, RNA binding	2.77E-03
70	GO:0071949: FAD binding	3.13E-03
71	GO:0016844: strictosidine synthase activity	3.50E-03
72	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.50E-03
73	GO:0004565: beta-galactosidase activity	5.15E-03
74	GO:0005315: inorganic phosphate transmembrane transporter activity	5.15E-03
75	GO:0008266: poly(U) RNA binding	5.60E-03
76	GO:0003779: actin binding	6.29E-03
77	GO:0051082: unfolded protein binding	6.48E-03
78	GO:0015035: protein disulfide oxidoreductase activity	6.67E-03
79	GO:0004857: enzyme inhibitor activity	7.01E-03
80	GO:0005509: calcium ion binding	7.55E-03
81	GO:0022891: substrate-specific transmembrane transporter activity	9.08E-03
82	GO:0003756: protein disulfide isomerase activity	9.63E-03
83	GO:0008514: organic anion transmembrane transporter activity	9.63E-03
84	GO:0004812: aminoacyl-tRNA ligase activity	1.02E-02
85	GO:0008080: N-acetyltransferase activity	1.13E-02
86	GO:0019901: protein kinase binding	1.25E-02
87	GO:0003743: translation initiation factor activity	1.31E-02
88	GO:0048038: quinone binding	1.32E-02
89	GO:0042802: identical protein binding	1.43E-02
90	GO:0016413: O-acetyltransferase activity	1.64E-02
91	GO:0016597: amino acid binding	1.64E-02
92	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.99E-02
93	GO:0050897: cobalt ion binding	2.29E-02
94	GO:0030145: manganese ion binding	2.29E-02
95	GO:0003993: acid phosphatase activity	2.52E-02
96	GO:0050661: NADP binding	2.68E-02
97	GO:0005198: structural molecule activity	3.18E-02
98	GO:0003924: GTPase activity	3.19E-02
99	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-02
100	GO:0051287: NAD binding	3.35E-02
101	GO:0004650: polygalacturonase activity	4.36E-02
102	GO:0016491: oxidoreductase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0009507: chloroplast	5.25E-43
4	GO:0009570: chloroplast stroma	2.69E-24
5	GO:0009534: chloroplast thylakoid	1.70E-22
6	GO:0009535: chloroplast thylakoid membrane	6.68E-21
7	GO:0009941: chloroplast envelope	4.76E-14
8	GO:0009579: thylakoid	1.98E-12
9	GO:0010287: plastoglobule	4.07E-10
10	GO:0031977: thylakoid lumen	2.25E-08
11	GO:0009654: photosystem II oxygen evolving complex	3.93E-07
12	GO:0009543: chloroplast thylakoid lumen	4.78E-07
13	GO:0019898: extrinsic component of membrane	2.15E-06
14	GO:0030095: chloroplast photosystem II	1.05E-05
15	GO:0009522: photosystem I	6.35E-05
16	GO:0009523: photosystem II	7.07E-05
17	GO:0009538: photosystem I reaction center	8.88E-05
18	GO:0009783: photosystem II antenna complex	1.33E-04
19	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	1.33E-04
20	GO:0009515: granal stacked thylakoid	1.33E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.37E-04
22	GO:0008290: F-actin capping protein complex	3.07E-04
23	GO:0009517: PSII associated light-harvesting complex II	9.59E-04
24	GO:0005759: mitochondrial matrix	1.52E-03
25	GO:0008180: COP9 signalosome	3.13E-03
26	GO:0032040: small-subunit processome	4.72E-03
27	GO:0005938: cell cortex	5.15E-03
28	GO:0030076: light-harvesting complex	6.06E-03
29	GO:0009706: chloroplast inner membrane	6.48E-03
30	GO:0048046: apoplast	6.61E-03
31	GO:0005623: cell	8.34E-03
32	GO:0015629: actin cytoskeleton	9.08E-03
33	GO:0005778: peroxisomal membrane	1.57E-02
34	GO:0016020: membrane	1.99E-02
35	GO:0019005: SCF ubiquitin ligase complex	2.06E-02
36	GO:0031969: chloroplast membrane	2.16E-02
37	GO:0000502: proteasome complex	3.62E-02