co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G49020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0015871: choline transport	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0046294: formaldehyde catabolic process	0.00E+00
5	GO:0009106: lipoate metabolic process	0.00E+00
6	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
7	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
8	GO:0071000: response to magnetism	0.00E+00
9	GO:0097164: ammonium ion metabolic process	0.00E+00
10	GO:0046460: neutral lipid biosynthetic process	0.00E+00
11	GO:0036172: thiamine salvage	0.00E+00
12	GO:0032928: regulation of superoxide anion generation	0.00E+00
13	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
14	GO:0006907: pinocytosis	0.00E+00
15	GO:0015739: sialic acid transport	0.00E+00
16	GO:0010343: singlet oxygen-mediated programmed cell death	3.13E-06
17	GO:0010117: photoprotection	7.32E-05
18	GO:1902265: abscisic acid homeostasis	2.60E-04
19	GO:0051418: microtubule nucleation by microtubule organizing center	2.60E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	2.60E-04
21	GO:0071454: cellular response to anoxia	2.60E-04
22	GO:0071461: cellular response to redox state	2.60E-04
23	GO:0034080: CENP-A containing nucleosome assembly	2.60E-04
24	GO:0022900: electron transport chain	3.02E-04
25	GO:0015780: nucleotide-sugar transport	3.65E-04
26	GO:1900426: positive regulation of defense response to bacterium	4.33E-04
27	GO:0016122: xanthophyll metabolic process	5.74E-04
28	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.74E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.74E-04
30	GO:1901529: positive regulation of anion channel activity	5.74E-04
31	GO:0033566: gamma-tubulin complex localization	5.74E-04
32	GO:0048255: mRNA stabilization	5.74E-04
33	GO:0080005: photosystem stoichiometry adjustment	5.74E-04
34	GO:0090603: sieve element differentiation	5.74E-04
35	GO:0010617: circadian regulation of calcium ion oscillation	5.74E-04
36	GO:0070981: L-asparagine biosynthetic process	5.74E-04
37	GO:0007154: cell communication	5.74E-04
38	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.74E-04
39	GO:0099402: plant organ development	5.74E-04
40	GO:0006529: asparagine biosynthetic process	5.74E-04
41	GO:0007052: mitotic spindle organization	9.31E-04
42	GO:0010476: gibberellin mediated signaling pathway	9.31E-04
43	GO:0010325: raffinose family oligosaccharide biosynthetic process	9.31E-04
44	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	9.31E-04
45	GO:0009663: plasmodesma organization	9.31E-04
46	GO:0031022: nuclear migration along microfilament	9.31E-04
47	GO:1902448: positive regulation of shade avoidance	9.31E-04
48	GO:1901672: positive regulation of systemic acquired resistance	9.31E-04
49	GO:0009150: purine ribonucleotide metabolic process	9.31E-04
50	GO:0071492: cellular response to UV-A	9.31E-04
51	GO:0006696: ergosterol biosynthetic process	9.31E-04
52	GO:0009451: RNA modification	1.10E-03
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-03
54	GO:1902476: chloride transmembrane transport	1.33E-03
55	GO:0090307: mitotic spindle assembly	1.33E-03
56	GO:0033014: tetrapyrrole biosynthetic process	1.33E-03
57	GO:0010088: phloem development	1.33E-03
58	GO:1901332: negative regulation of lateral root development	1.33E-03
59	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.33E-03
60	GO:1902290: positive regulation of defense response to oomycetes	1.33E-03
61	GO:0006882: cellular zinc ion homeostasis	1.33E-03
62	GO:2001141: regulation of RNA biosynthetic process	1.33E-03
63	GO:0034508: centromere complex assembly	1.33E-03
64	GO:0071486: cellular response to high light intensity	1.78E-03
65	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.78E-03
66	GO:0042274: ribosomal small subunit biogenesis	1.78E-03
67	GO:0009765: photosynthesis, light harvesting	1.78E-03
68	GO:0006221: pyrimidine nucleotide biosynthetic process	1.78E-03
69	GO:0006749: glutathione metabolic process	1.78E-03
70	GO:1902347: response to strigolactone	1.78E-03
71	GO:0009902: chloroplast relocation	1.78E-03
72	GO:0034613: cellular protein localization	1.78E-03
73	GO:0010051: xylem and phloem pattern formation	2.13E-03
74	GO:0009229: thiamine diphosphate biosynthetic process	2.27E-03
75	GO:0009107: lipoate biosynthetic process	2.27E-03
76	GO:0016123: xanthophyll biosynthetic process	2.27E-03
77	GO:0000304: response to singlet oxygen	2.27E-03
78	GO:0046283: anthocyanin-containing compound metabolic process	2.27E-03
79	GO:0009958: positive gravitropism	2.29E-03
80	GO:0009646: response to absence of light	2.47E-03
81	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.80E-03
82	GO:0016070: RNA metabolic process	2.80E-03
83	GO:0031053: primary miRNA processing	2.80E-03
84	GO:1901371: regulation of leaf morphogenesis	2.80E-03
85	GO:0060918: auxin transport	2.80E-03
86	GO:0006796: phosphate-containing compound metabolic process	2.80E-03
87	GO:0042793: transcription from plastid promoter	2.80E-03
88	GO:0000741: karyogamy	2.80E-03
89	GO:0009228: thiamine biosynthetic process	2.80E-03
90	GO:0010310: regulation of hydrogen peroxide metabolic process	3.36E-03
91	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.36E-03
92	GO:0034389: lipid particle organization	3.36E-03
93	GO:0009903: chloroplast avoidance movement	3.36E-03
94	GO:0010019: chloroplast-nucleus signaling pathway	3.36E-03
95	GO:0048444: floral organ morphogenesis	3.36E-03
96	GO:0071446: cellular response to salicylic acid stimulus	3.97E-03
97	GO:0006821: chloride transport	3.97E-03
98	GO:0030026: cellular manganese ion homeostasis	3.97E-03
99	GO:0051510: regulation of unidimensional cell growth	3.97E-03
100	GO:0016126: sterol biosynthetic process	4.08E-03
101	GO:0007155: cell adhesion	4.60E-03
102	GO:0048564: photosystem I assembly	4.60E-03
103	GO:0045292: mRNA cis splicing, via spliceosome	4.60E-03
104	GO:0010928: regulation of auxin mediated signaling pathway	4.60E-03
105	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.60E-03
106	GO:1900150: regulation of defense response to fungus	4.60E-03
107	GO:0009704: de-etiolation	4.60E-03
108	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.27E-03
109	GO:0071482: cellular response to light stimulus	5.27E-03
110	GO:0019430: removal of superoxide radicals	5.27E-03
111	GO:0010100: negative regulation of photomorphogenesis	5.27E-03
112	GO:0032544: plastid translation	5.27E-03
113	GO:0019432: triglyceride biosynthetic process	5.98E-03
114	GO:0046916: cellular transition metal ion homeostasis	5.98E-03
115	GO:0006783: heme biosynthetic process	5.98E-03
116	GO:0009056: catabolic process	5.98E-03
117	GO:0009638: phototropism	6.71E-03
118	GO:0006779: porphyrin-containing compound biosynthetic process	6.71E-03
119	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.71E-03
120	GO:0009637: response to blue light	6.74E-03
121	GO:0010192: mucilage biosynthetic process	7.47E-03
122	GO:0055062: phosphate ion homeostasis	7.47E-03
123	GO:0009688: abscisic acid biosynthetic process	7.47E-03
124	GO:0045036: protein targeting to chloroplast	7.47E-03
125	GO:0006816: calcium ion transport	8.27E-03
126	GO:0043085: positive regulation of catalytic activity	8.27E-03
127	GO:0006352: DNA-templated transcription, initiation	8.27E-03
128	GO:0006790: sulfur compound metabolic process	9.09E-03
129	GO:0045037: protein import into chloroplast stroma	9.09E-03
130	GO:0008643: carbohydrate transport	9.42E-03
131	GO:0009658: chloroplast organization	9.92E-03
132	GO:0010075: regulation of meristem growth	9.94E-03
133	GO:0009767: photosynthetic electron transport chain	9.94E-03
134	GO:0030048: actin filament-based movement	9.94E-03
135	GO:0009785: blue light signaling pathway	9.94E-03
136	GO:0050826: response to freezing	9.94E-03
137	GO:0034605: cellular response to heat	1.08E-02
138	GO:0006541: glutamine metabolic process	1.08E-02
139	GO:0010207: photosystem II assembly	1.08E-02
140	GO:0019253: reductive pentose-phosphate cycle	1.08E-02
141	GO:0009825: multidimensional cell growth	1.17E-02
142	GO:0006071: glycerol metabolic process	1.27E-02
143	GO:0000162: tryptophan biosynthetic process	1.27E-02
144	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.36E-02
145	GO:0006289: nucleotide-excision repair	1.36E-02
146	GO:2000377: regulation of reactive oxygen species metabolic process	1.36E-02
147	GO:0007017: microtubule-based process	1.46E-02
148	GO:0019915: lipid storage	1.56E-02
149	GO:0016226: iron-sulfur cluster assembly	1.67E-02
150	GO:0055114: oxidation-reduction process	1.83E-02
151	GO:0016117: carotenoid biosynthetic process	1.99E-02
152	GO:0070417: cellular response to cold	1.99E-02
153	GO:0010118: stomatal movement	2.11E-02
154	GO:0000226: microtubule cytoskeleton organization	2.11E-02
155	GO:0010087: phloem or xylem histogenesis	2.11E-02
156	GO:0006810: transport	2.18E-02
157	GO:0010197: polar nucleus fusion	2.22E-02
158	GO:0042752: regulation of circadian rhythm	2.34E-02
159	GO:0009851: auxin biosynthetic process	2.46E-02
160	GO:0007264: small GTPase mediated signal transduction	2.70E-02
161	GO:0000910: cytokinesis	3.22E-02
162	GO:0009615: response to virus	3.35E-02
163	GO:0010029: regulation of seed germination	3.49E-02
164	GO:0009816: defense response to bacterium, incompatible interaction	3.49E-02
165	GO:0015995: chlorophyll biosynthetic process	3.77E-02
166	GO:0030244: cellulose biosynthetic process	4.05E-02
167	GO:0018298: protein-chromophore linkage	4.05E-02
168	GO:0008219: cell death	4.05E-02
169	GO:0009407: toxin catabolic process	4.34E-02
170	GO:0006811: ion transport	4.34E-02
171	GO:0010218: response to far red light	4.34E-02
172	GO:0009416: response to light stimulus	4.35E-02
173	GO:0010043: response to zinc ion	4.49E-02
174	GO:0007568: aging	4.49E-02
175	GO:0009631: cold acclimation	4.49E-02
176	GO:0042254: ribosome biogenesis	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
4	GO:0015220: choline transmembrane transporter activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
9	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
10	GO:0004848: ureidoglycolate hydrolase activity	1.13E-05
11	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.93E-04
12	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.60E-04
13	GO:0046906: tetrapyrrole binding	2.60E-04
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.60E-04
15	GO:0015085: calcium ion transmembrane transporter activity	2.60E-04
16	GO:0004071: aspartate-ammonia ligase activity	2.60E-04
17	GO:0004325: ferrochelatase activity	2.60E-04
18	GO:0016783: sulfurtransferase activity	2.60E-04
19	GO:0051996: squalene synthase activity	2.60E-04
20	GO:0048038: quinone binding	2.96E-04
21	GO:0071949: FAD binding	3.65E-04
22	GO:0016415: octanoyltransferase activity	5.74E-04
23	GO:0004046: aminoacylase activity	5.74E-04
24	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	5.74E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.74E-04
26	GO:0017118: lipoyltransferase activity	5.74E-04
27	GO:0010331: gibberellin binding	5.74E-04
28	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	9.31E-04
29	GO:0004180: carboxypeptidase activity	9.31E-04
30	GO:0032947: protein complex scaffold	9.31E-04
31	GO:0019003: GDP binding	9.31E-04
32	GO:0000254: C-4 methylsterol oxidase activity	1.33E-03
33	GO:0004792: thiosulfate sulfurtransferase activity	1.33E-03
34	GO:0016851: magnesium chelatase activity	1.33E-03
35	GO:0000339: RNA cap binding	1.33E-03
36	GO:0009882: blue light photoreceptor activity	1.33E-03
37	GO:0047627: adenylylsulfatase activity	1.33E-03
38	GO:0001053: plastid sigma factor activity	1.78E-03
39	GO:0004834: tryptophan synthase activity	1.78E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-03
41	GO:0015369: calcium:proton antiporter activity	1.78E-03
42	GO:0016987: sigma factor activity	1.78E-03
43	GO:0043015: gamma-tubulin binding	1.78E-03
44	GO:0005253: anion channel activity	1.78E-03
45	GO:0015368: calcium:cation antiporter activity	1.78E-03
46	GO:0016491: oxidoreductase activity	1.84E-03
47	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.33E-03
48	GO:0005247: voltage-gated chloride channel activity	2.80E-03
49	GO:0004784: superoxide dismutase activity	2.80E-03
50	GO:0004518: nuclease activity	3.02E-03
51	GO:0005506: iron ion binding	3.33E-03
52	GO:0004144: diacylglycerol O-acyltransferase activity	3.36E-03
53	GO:0004427: inorganic diphosphatase activity	3.97E-03
54	GO:0019899: enzyme binding	3.97E-03
55	GO:0004525: ribonuclease III activity	4.60E-03
56	GO:0030247: polysaccharide binding	4.80E-03
57	GO:0046914: transition metal ion binding	5.27E-03
58	GO:0004519: endonuclease activity	5.88E-03
59	GO:0001055: RNA polymerase II activity	6.71E-03
60	GO:0004713: protein tyrosine kinase activity	7.47E-03
61	GO:0004860: protein kinase inhibitor activity	8.27E-03
62	GO:0004129: cytochrome-c oxidase activity	8.27E-03
63	GO:0001054: RNA polymerase I activity	8.27E-03
64	GO:0001056: RNA polymerase III activity	9.09E-03
65	GO:0051537: 2 iron, 2 sulfur cluster binding	9.42E-03
66	GO:0031072: heat shock protein binding	9.94E-03
67	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.08E-02
68	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.18E-02
69	GO:0003887: DNA-directed DNA polymerase activity	1.27E-02
70	GO:0051536: iron-sulfur cluster binding	1.36E-02
71	GO:0004176: ATP-dependent peptidase activity	1.56E-02
72	GO:0022857: transmembrane transporter activity	1.58E-02
73	GO:0046872: metal ion binding	1.70E-02
74	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.16E-02
75	GO:0008080: N-acetyltransferase activity	2.22E-02
76	GO:0008237: metallopeptidase activity	3.09E-02
77	GO:0016168: chlorophyll binding	3.49E-02
78	GO:0008236: serine-type peptidase activity	3.91E-02
79	GO:0003824: catalytic activity	4.03E-02
80	GO:0005096: GTPase activator activity	4.20E-02
81	GO:0008168: methyltransferase activity	4.31E-02
82	GO:0004222: metalloendopeptidase activity	4.34E-02
83	GO:0003746: translation elongation factor activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0097218: sieve plate	0.00E+00
3	GO:0009507: chloroplast	5.56E-19
4	GO:0009535: chloroplast thylakoid membrane	3.35E-08
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.12E-05
6	GO:0031021: interphase microtubule organizing center	2.60E-04
7	GO:0005845: mRNA cap binding complex	2.60E-04
8	GO:0008274: gamma-tubulin ring complex	5.74E-04
9	GO:0005846: nuclear cap binding complex	5.74E-04
10	GO:0005640: nuclear outer membrane	9.31E-04
11	GO:0009897: external side of plasma membrane	9.31E-04
12	GO:0016605: PML body	9.31E-04
13	GO:0000923: equatorial microtubule organizing center	1.33E-03
14	GO:0042646: plastid nucleoid	1.33E-03
15	GO:0000930: gamma-tubulin complex	1.78E-03
16	GO:0030286: dynein complex	1.78E-03
17	GO:0009517: PSII associated light-harvesting complex II	1.78E-03
18	GO:0005828: kinetochore microtubule	1.78E-03
19	GO:0055035: plastid thylakoid membrane	2.27E-03
20	GO:0072686: mitotic spindle	2.27E-03
21	GO:0000776: kinetochore	2.27E-03
22	GO:0034707: chloride channel complex	2.80E-03
23	GO:0030140: trans-Golgi network transport vesicle	2.80E-03
24	GO:0031969: chloroplast membrane	2.86E-03
25	GO:0009840: chloroplastic endopeptidase Clp complex	3.36E-03
26	GO:0009295: nucleoid	3.64E-03
27	GO:0005623: cell	3.90E-03
28	GO:0009570: chloroplast stroma	4.28E-03
29	GO:0046930: pore complex	5.27E-03
30	GO:0005811: lipid particle	5.27E-03
31	GO:0042644: chloroplast nucleoid	5.98E-03
32	GO:0016604: nuclear body	6.71E-03
33	GO:0009508: plastid chromosome	9.94E-03
34	GO:0009574: preprophase band	9.94E-03
35	GO:0030176: integral component of endoplasmic reticulum membrane	1.17E-02
36	GO:0000419: DNA-directed RNA polymerase V complex	1.27E-02
37	GO:0005769: early endosome	1.27E-02
38	GO:0043234: protein complex	1.27E-02
39	GO:0005875: microtubule associated complex	1.27E-02
40	GO:0042651: thylakoid membrane	1.46E-02
41	GO:0015935: small ribosomal subunit	1.56E-02
42	GO:0009534: chloroplast thylakoid	1.64E-02
43	GO:0009524: phragmoplast	2.22E-02
44	GO:0009523: photosystem II	2.46E-02
45	GO:0005622: intracellular	2.91E-02
46	GO:0046658: anchored component of plasma membrane	3.84E-02
47	GO:0009536: plastid	4.72E-02