Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G48840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
4GO:1900426: positive regulation of defense response to bacterium1.84E-05
5GO:0072387: flavin adenine dinucleotide metabolic process3.12E-05
6GO:0071461: cellular response to redox state3.12E-05
7GO:0010343: singlet oxygen-mediated programmed cell death7.88E-05
8GO:1901529: positive regulation of anion channel activity7.88E-05
9GO:2000030: regulation of response to red or far red light7.88E-05
10GO:0080005: photosystem stoichiometry adjustment7.88E-05
11GO:0010617: circadian regulation of calcium ion oscillation7.88E-05
12GO:0099402: plant organ development7.88E-05
13GO:0080185: effector dependent induction by symbiont of host immune response7.88E-05
14GO:1902448: positive regulation of shade avoidance1.37E-04
15GO:0019419: sulfate reduction1.37E-04
16GO:0006013: mannose metabolic process1.37E-04
17GO:1901672: positive regulation of systemic acquired resistance1.37E-04
18GO:0006696: ergosterol biosynthetic process1.37E-04
19GO:0046653: tetrahydrofolate metabolic process2.04E-04
20GO:1901332: negative regulation of lateral root development2.04E-04
21GO:2001141: regulation of RNA biosynthetic process2.04E-04
22GO:0009658: chloroplast organization2.66E-04
23GO:0071585: detoxification of cadmium ion2.76E-04
24GO:1902347: response to strigolactone2.76E-04
25GO:0034613: cellular protein localization2.76E-04
26GO:0010117: photoprotection3.53E-04
27GO:0046283: anthocyanin-containing compound metabolic process3.53E-04
28GO:0010236: plastoquinone biosynthetic process3.53E-04
29GO:0006555: methionine metabolic process4.34E-04
30GO:1901371: regulation of leaf morphogenesis4.34E-04
31GO:0060918: auxin transport4.34E-04
32GO:0019509: L-methionine salvage from methylthioadenosine5.20E-04
33GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.20E-04
34GO:0010016: shoot system morphogenesis5.20E-04
35GO:0010189: vitamin E biosynthetic process5.20E-04
36GO:0010310: regulation of hydrogen peroxide metabolic process5.20E-04
37GO:0009396: folic acid-containing compound biosynthetic process6.07E-04
38GO:0051510: regulation of unidimensional cell growth6.07E-04
39GO:0010038: response to metal ion6.07E-04
40GO:0071482: cellular response to light stimulus7.94E-04
41GO:0009880: embryonic pattern specification7.94E-04
42GO:0044030: regulation of DNA methylation7.94E-04
43GO:0009638: phototropism9.92E-04
44GO:0035999: tetrahydrofolate interconversion9.92E-04
45GO:0000103: sulfate assimilation1.10E-03
46GO:0006879: cellular iron ion homeostasis1.20E-03
47GO:0006352: DNA-templated transcription, initiation1.20E-03
48GO:0009785: blue light signaling pathway1.43E-03
49GO:0010075: regulation of meristem growth1.43E-03
50GO:0010207: photosystem II assembly1.55E-03
51GO:2000377: regulation of reactive oxygen species metabolic process1.92E-03
52GO:0019344: cysteine biosynthetic process1.92E-03
53GO:0008299: isoprenoid biosynthetic process2.05E-03
54GO:0007017: microtubule-based process2.05E-03
55GO:0006730: one-carbon metabolic process2.32E-03
56GO:0016226: iron-sulfur cluster assembly2.32E-03
57GO:0006817: phosphate ion transport2.61E-03
58GO:0016117: carotenoid biosynthetic process2.75E-03
59GO:0010051: xylem and phloem pattern formation2.90E-03
60GO:0010118: stomatal movement2.90E-03
61GO:0042752: regulation of circadian rhythm3.20E-03
62GO:0009646: response to absence of light3.20E-03
63GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.51E-03
64GO:0030163: protein catabolic process3.84E-03
65GO:0016579: protein deubiquitination4.34E-03
66GO:0006950: response to stress5.05E-03
67GO:0018298: protein-chromophore linkage5.42E-03
68GO:0010218: response to far red light5.79E-03
69GO:0010043: response to zinc ion5.99E-03
70GO:0007568: aging5.99E-03
71GO:0009853: photorespiration6.38E-03
72GO:0009637: response to blue light6.38E-03
73GO:0009640: photomorphogenesis7.60E-03
74GO:0010114: response to red light7.60E-03
75GO:0009644: response to high light intensity8.03E-03
76GO:0055114: oxidation-reduction process9.15E-03
77GO:0051603: proteolysis involved in cellular protein catabolic process9.59E-03
78GO:0048367: shoot system development1.08E-02
79GO:0006508: proteolysis1.18E-02
80GO:0007623: circadian rhythm1.77E-02
81GO:0048366: leaf development2.71E-02
82GO:0046777: protein autophosphorylation2.95E-02
83GO:0015979: photosynthesis3.09E-02
84GO:0045454: cell redox homeostasis3.19E-02
85GO:0045892: negative regulation of transcription, DNA-templated3.23E-02
86GO:0032259: methylation3.59E-02
87GO:0048364: root development3.82E-02
88GO:0009734: auxin-activated signaling pathway4.73E-02
RankGO TermAdjusted P value
1GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0050342: tocopherol O-methyltransferase activity0.00E+00
5GO:0051996: squalene synthase activity3.12E-05
6GO:0016783: sulfurtransferase activity3.12E-05
7GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.12E-05
8GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.12E-05
9GO:0050347: trans-octaprenyltranstransferase activity7.88E-05
10GO:0004477: methenyltetrahydrofolate cyclohydrolase activity7.88E-05
11GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity7.88E-05
12GO:0004046: aminoacylase activity7.88E-05
13GO:0009973: adenylyl-sulfate reductase activity7.88E-05
14GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity7.88E-05
15GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.88E-05
16GO:0033741: adenylyl-sulfate reductase (glutathione) activity7.88E-05
17GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity7.88E-05
18GO:0004180: carboxypeptidase activity1.37E-04
19GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.37E-04
20GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.37E-04
21GO:0004792: thiosulfate sulfurtransferase activity2.04E-04
22GO:0009882: blue light photoreceptor activity2.04E-04
23GO:0016987: sigma factor activity2.76E-04
24GO:0001053: plastid sigma factor activity2.76E-04
25GO:0004559: alpha-mannosidase activity5.20E-04
26GO:0071949: FAD binding8.92E-04
27GO:0016746: transferase activity, transferring acyl groups1.03E-03
28GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.43E-03
29GO:0005315: inorganic phosphate transmembrane transporter activity1.43E-03
30GO:0031072: heat shock protein binding1.43E-03
31GO:0008080: N-acetyltransferase activity3.05E-03
32GO:0048038: quinone binding3.51E-03
33GO:0004843: thiol-dependent ubiquitin-specific protease activity3.51E-03
34GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-03
35GO:0008236: serine-type peptidase activity5.23E-03
36GO:0005515: protein binding7.31E-03
37GO:0004185: serine-type carboxypeptidase activity7.60E-03
38GO:0015293: symporter activity8.24E-03
39GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.36E-03
40GO:0003777: microtubule motor activity1.01E-02
41GO:0051082: unfolded protein binding1.20E-02
42GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.43E-02
43GO:0008017: microtubule binding1.82E-02
44GO:0042802: identical protein binding2.09E-02
45GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.09E-02
46GO:0008233: peptidase activity2.77E-02
47GO:0004497: monooxygenase activity2.81E-02
48GO:0042803: protein homodimerization activity3.30E-02
49GO:0016787: hydrolase activity3.63E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.45E-06
2GO:0031972: chloroplast intermembrane space3.12E-05
3GO:0016605: PML body1.37E-04
4GO:0030286: dynein complex2.76E-04
5GO:0016604: nuclear body9.92E-04
6GO:0009706: chloroplast inner membrane1.00E-03
7GO:0005773: vacuole1.31E-03
8GO:0005875: microtubule associated complex1.79E-03
9GO:0009505: plant-type cell wall3.77E-03
10GO:0009570: chloroplast stroma7.84E-03
11GO:0010287: plastoglobule1.35E-02
12GO:0005774: vacuolar membrane1.37E-02
13GO:0009536: plastid2.08E-02
14GO:0031969: chloroplast membrane2.81E-02
15GO:0005783: endoplasmic reticulum3.31E-02
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Gene type



Gene DE type