co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0005996: monosaccharide metabolic process	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:0016118: carotenoid catabolic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
11	GO:0015979: photosynthesis	4.03E-25
12	GO:0032544: plastid translation	6.78E-14
13	GO:0009773: photosynthetic electron transport in photosystem I	1.70E-12
14	GO:0010027: thylakoid membrane organization	3.58E-12
15	GO:0006412: translation	1.99E-10
16	GO:0009735: response to cytokinin	2.85E-09
17	GO:0010206: photosystem II repair	4.30E-09
18	GO:0010207: photosystem II assembly	6.31E-08
19	GO:0010196: nonphotochemical quenching	8.60E-08
20	GO:0042254: ribosome biogenesis	2.72E-07
21	GO:0009658: chloroplast organization	3.05E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.84E-06
23	GO:0015995: chlorophyll biosynthetic process	8.73E-06
24	GO:0009768: photosynthesis, light harvesting in photosystem I	8.79E-06
25	GO:0006000: fructose metabolic process	2.05E-05
26	GO:0019684: photosynthesis, light reaction	5.40E-05
27	GO:0019464: glycine decarboxylation via glycine cleavage system	8.00E-05
28	GO:0006109: regulation of carbohydrate metabolic process	8.00E-05
29	GO:0010021: amylopectin biosynthetic process	8.00E-05
30	GO:0010236: plastoquinone biosynthetic process	1.25E-04
31	GO:0018298: protein-chromophore linkage	1.53E-04
32	GO:0010190: cytochrome b6f complex assembly	1.80E-04
33	GO:0061077: chaperone-mediated protein folding	2.13E-04
34	GO:0000023: maltose metabolic process	3.60E-04
35	GO:0006438: valyl-tRNA aminoacylation	3.60E-04
36	GO:0043953: protein transport by the Tat complex	3.60E-04
37	GO:0042371: vitamin K biosynthetic process	3.60E-04
38	GO:0065002: intracellular protein transmembrane transport	3.60E-04
39	GO:0080093: regulation of photorespiration	3.60E-04
40	GO:0043007: maintenance of rDNA	3.60E-04
41	GO:0031998: regulation of fatty acid beta-oxidation	3.60E-04
42	GO:1902458: positive regulation of stomatal opening	3.60E-04
43	GO:0005978: glycogen biosynthetic process	3.97E-04
44	GO:0006002: fructose 6-phosphate metabolic process	4.86E-04
45	GO:0015996: chlorophyll catabolic process	4.86E-04
46	GO:0019252: starch biosynthetic process	5.03E-04
47	GO:0009409: response to cold	6.39E-04
48	GO:0010205: photoinhibition	6.87E-04
49	GO:0035304: regulation of protein dephosphorylation	7.83E-04
50	GO:0009629: response to gravity	7.83E-04
51	GO:0016124: xanthophyll catabolic process	7.83E-04
52	GO:0019388: galactose catabolic process	7.83E-04
53	GO:0007154: cell communication	7.83E-04
54	GO:0018026: peptidyl-lysine monomethylation	7.83E-04
55	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.83E-04
56	GO:0016121: carotene catabolic process	7.83E-04
57	GO:0043085: positive regulation of catalytic activity	9.22E-04
58	GO:0018119: peptidyl-cysteine S-nitrosylation	9.22E-04
59	GO:0005983: starch catabolic process	1.05E-03
60	GO:0045037: protein import into chloroplast stroma	1.05E-03
61	GO:0005986: sucrose biosynthetic process	1.19E-03
62	GO:0006094: gluconeogenesis	1.19E-03
63	GO:0090391: granum assembly	1.27E-03
64	GO:0006518: peptide metabolic process	1.27E-03
65	GO:0016050: vesicle organization	1.27E-03
66	GO:0034599: cellular response to oxidative stress	1.74E-03
67	GO:0071484: cellular response to light intensity	1.83E-03
68	GO:0010731: protein glutathionylation	1.83E-03
69	GO:0009590: detection of gravity	1.83E-03
70	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.83E-03
71	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.83E-03
72	GO:0045454: cell redox homeostasis	1.94E-03
73	GO:0006418: tRNA aminoacylation for protein translation	2.05E-03
74	GO:0055114: oxidation-reduction process	2.18E-03
75	GO:0006810: transport	2.33E-03
76	GO:0051322: anaphase	2.45E-03
77	GO:0045727: positive regulation of translation	2.45E-03
78	GO:0015994: chlorophyll metabolic process	2.45E-03
79	GO:0006546: glycine catabolic process	2.45E-03
80	GO:0006808: regulation of nitrogen utilization	2.45E-03
81	GO:0010109: regulation of photosynthesis	2.45E-03
82	GO:0015976: carbon utilization	2.45E-03
83	GO:0042742: defense response to bacterium	2.91E-03
84	GO:0000304: response to singlet oxygen	3.14E-03
85	GO:0032543: mitochondrial translation	3.14E-03
86	GO:0045038: protein import into chloroplast thylakoid membrane	3.14E-03
87	GO:0006097: glyoxylate cycle	3.14E-03
88	GO:0016123: xanthophyll biosynthetic process	3.14E-03
89	GO:0016117: carotenoid biosynthetic process	3.16E-03
90	GO:0006662: glycerol ether metabolic process	3.68E-03
91	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.88E-03
92	GO:0000470: maturation of LSU-rRNA	3.88E-03
93	GO:0009635: response to herbicide	3.88E-03
94	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.88E-03
95	GO:0042549: photosystem II stabilization	3.88E-03
96	GO:0009955: adaxial/abaxial pattern specification	4.67E-03
97	GO:0042372: phylloquinone biosynthetic process	4.67E-03
98	GO:0042026: protein refolding	4.67E-03
99	GO:0006458: 'de novo' protein folding	4.67E-03
100	GO:1901259: chloroplast rRNA processing	4.67E-03
101	GO:0030488: tRNA methylation	4.67E-03
102	GO:0010189: vitamin E biosynthetic process	4.67E-03
103	GO:0009772: photosynthetic electron transport in photosystem II	5.52E-03
104	GO:0009769: photosynthesis, light harvesting in photosystem II	5.52E-03
105	GO:0009645: response to low light intensity stimulus	5.52E-03
106	GO:0009642: response to light intensity	6.41E-03
107	GO:0006605: protein targeting	6.41E-03
108	GO:2000070: regulation of response to water deprivation	6.41E-03
109	GO:0009793: embryo development ending in seed dormancy	6.81E-03
110	GO:0007186: G-protein coupled receptor signaling pathway	7.36E-03
111	GO:0009657: plastid organization	7.36E-03
112	GO:0017004: cytochrome complex assembly	7.36E-03
113	GO:0016311: dephosphorylation	8.18E-03
114	GO:0009790: embryo development	8.46E-03
115	GO:0005982: starch metabolic process	9.38E-03
116	GO:0031627: telomeric loop formation	1.05E-02
117	GO:0048829: root cap development	1.05E-02
118	GO:0009089: lysine biosynthetic process via diaminopimelate	1.16E-02
119	GO:0009073: aromatic amino acid family biosynthetic process	1.16E-02
120	GO:0006415: translational termination	1.16E-02
121	GO:0000272: polysaccharide catabolic process	1.16E-02
122	GO:0009750: response to fructose	1.16E-02
123	GO:0010102: lateral root morphogenesis	1.40E-02
124	GO:0010628: positive regulation of gene expression	1.40E-02
125	GO:0006108: malate metabolic process	1.40E-02
126	GO:0006006: glucose metabolic process	1.40E-02
127	GO:0009767: photosynthetic electron transport chain	1.40E-02
128	GO:0019253: reductive pentose-phosphate cycle	1.52E-02
129	GO:0009644: response to high light intensity	1.53E-02
130	GO:0005985: sucrose metabolic process	1.65E-02
131	GO:0006636: unsaturated fatty acid biosynthetic process	1.78E-02
132	GO:0006364: rRNA processing	1.91E-02
133	GO:0000027: ribosomal large subunit assembly	1.92E-02
134	GO:0006289: nucleotide-excision repair	1.92E-02
135	GO:0019915: lipid storage	2.20E-02
136	GO:0031408: oxylipin biosynthetic process	2.20E-02
137	GO:0016114: terpenoid biosynthetic process	2.20E-02
138	GO:0043086: negative regulation of catalytic activity	2.26E-02
139	GO:0006284: base-excision repair	2.65E-02
140	GO:0009561: megagametogenesis	2.65E-02
141	GO:0042631: cellular response to water deprivation	2.97E-02
142	GO:0010182: sugar mediated signaling pathway	3.13E-02
143	GO:0009646: response to absence of light	3.30E-02
144	GO:0071554: cell wall organization or biogenesis	3.64E-02
145	GO:0000302: response to reactive oxygen species	3.64E-02
146	GO:0030163: protein catabolic process	3.99E-02
147	GO:0010090: trichome morphogenesis	3.99E-02
148	GO:0009567: double fertilization forming a zygote and endosperm	4.17E-02
149	GO:0008152: metabolic process	4.38E-02
150	GO:0000910: cytokinesis	4.54E-02
151	GO:0007623: circadian rhythm	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0051738: xanthophyll binding	0.00E+00
12	GO:0019843: rRNA binding	5.31E-19
13	GO:0003735: structural constituent of ribosome	1.36E-11
14	GO:0005528: FK506 binding	2.89E-09
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.87E-06
16	GO:0031409: pigment binding	5.58E-06
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.84E-06
18	GO:0016168: chlorophyll binding	6.62E-06
19	GO:0004375: glycine dehydrogenase (decarboxylating) activity	4.51E-05
20	GO:0016851: magnesium chelatase activity	4.51E-05
21	GO:0008266: poly(U) RNA binding	9.92E-05
22	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.60E-04
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.60E-04
24	GO:0004856: xylulokinase activity	3.60E-04
25	GO:0010242: oxygen evolving activity	3.60E-04
26	GO:0045485: omega-6 fatty acid desaturase activity	3.60E-04
27	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	3.60E-04
28	GO:0034256: chlorophyll(ide) b reductase activity	3.60E-04
29	GO:0004832: valine-tRNA ligase activity	3.60E-04
30	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.60E-04
31	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.60E-04
32	GO:0016491: oxidoreductase activity	5.94E-04
33	GO:0005509: calcium ion binding	7.67E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	7.83E-04
35	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.83E-04
36	GO:0004614: phosphoglucomutase activity	7.83E-04
37	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.83E-04
38	GO:0008967: phosphoglycolate phosphatase activity	7.83E-04
39	GO:0010291: carotene beta-ring hydroxylase activity	7.83E-04
40	GO:0047746: chlorophyllase activity	7.83E-04
41	GO:0010297: heteropolysaccharide binding	7.83E-04
42	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.83E-04
43	GO:0008047: enzyme activator activity	8.01E-04
44	GO:0051082: unfolded protein binding	9.59E-04
45	GO:0031072: heat shock protein binding	1.19E-03
46	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.27E-03
47	GO:0004324: ferredoxin-NADP+ reductase activity	1.27E-03
48	GO:0043169: cation binding	1.27E-03
49	GO:0004373: glycogen (starch) synthase activity	1.27E-03
50	GO:0017150: tRNA dihydrouridine synthase activity	1.27E-03
51	GO:0002161: aminoacyl-tRNA editing activity	1.27E-03
52	GO:0005504: fatty acid binding	1.27E-03
53	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.27E-03
54	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.83E-03
55	GO:0016149: translation release factor activity, codon specific	1.83E-03
56	GO:0043023: ribosomal large subunit binding	1.83E-03
57	GO:0004857: enzyme inhibitor activity	1.85E-03
58	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.45E-03
59	GO:0045430: chalcone isomerase activity	2.45E-03
60	GO:0009011: starch synthase activity	2.45E-03
61	GO:0004659: prenyltransferase activity	2.45E-03
62	GO:0016279: protein-lysine N-methyltransferase activity	2.45E-03
63	GO:0008725: DNA-3-methyladenine glycosylase activity	3.14E-03
64	GO:0003959: NADPH dehydrogenase activity	3.14E-03
65	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.14E-03
66	GO:0004040: amidase activity	3.14E-03
67	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	3.14E-03
68	GO:0047134: protein-disulfide reductase activity	3.16E-03
69	GO:0004812: aminoacyl-tRNA ligase activity	3.16E-03
70	GO:0004130: cytochrome-c peroxidase activity	3.88E-03
71	GO:0016615: malate dehydrogenase activity	3.88E-03
72	GO:0004791: thioredoxin-disulfide reductase activity	3.96E-03
73	GO:0048038: quinone binding	4.55E-03
74	GO:0051920: peroxiredoxin activity	4.67E-03
75	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.67E-03
76	GO:0004017: adenylate kinase activity	4.67E-03
77	GO:0030060: L-malate dehydrogenase activity	4.67E-03
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.18E-03
79	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
80	GO:0016209: antioxidant activity	6.41E-03
81	GO:0008173: RNA methyltransferase activity	7.36E-03
82	GO:0004252: serine-type endopeptidase activity	7.94E-03
83	GO:0008236: serine-type peptidase activity	8.18E-03
84	GO:0003747: translation release factor activity	8.35E-03
85	GO:0003723: RNA binding	1.15E-02
86	GO:0003691: double-stranded telomeric DNA binding	1.16E-02
87	GO:0044183: protein binding involved in protein folding	1.16E-02
88	GO:0004565: beta-galactosidase activity	1.40E-02
89	GO:0004022: alcohol dehydrogenase (NAD) activity	1.40E-02
90	GO:0004089: carbonate dehydratase activity	1.40E-02
91	GO:0000287: magnesium ion binding	1.78E-02
92	GO:0003964: RNA-directed DNA polymerase activity	2.20E-02
93	GO:0030570: pectate lyase activity	2.50E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	2.50E-02
95	GO:0003756: protein disulfide isomerase activity	2.65E-02
96	GO:0015035: protein disulfide oxidoreductase activity	2.80E-02
97	GO:0050662: coenzyme binding	3.30E-02
98	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.49E-02
99	GO:0016829: lyase activity	3.68E-02
100	GO:0009055: electron carrier activity	4.24E-02
101	GO:0016413: O-acetyltransferase activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0044391: ribosomal subunit	0.00E+00
5	GO:0042579: microbody	0.00E+00
6	GO:0009507: chloroplast	1.38E-107
7	GO:0009534: chloroplast thylakoid	1.27E-68
8	GO:0009535: chloroplast thylakoid membrane	2.61E-68
9	GO:0009570: chloroplast stroma	4.80E-65
10	GO:0009941: chloroplast envelope	6.14E-57
11	GO:0009579: thylakoid	7.01E-45
12	GO:0009543: chloroplast thylakoid lumen	9.37E-33
13	GO:0031977: thylakoid lumen	1.74E-24
14	GO:0005840: ribosome	1.84E-17
15	GO:0010287: plastoglobule	1.55E-14
16	GO:0030095: chloroplast photosystem II	8.54E-14
17	GO:0009654: photosystem II oxygen evolving complex	7.30E-13
18	GO:0019898: extrinsic component of membrane	2.32E-11
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.30E-09
20	GO:0010319: stromule	1.50E-07
21	GO:0009538: photosystem I reaction center	1.55E-07
22	GO:0009706: chloroplast inner membrane	1.17E-06
23	GO:0009522: photosystem I	1.47E-06
24	GO:0031969: chloroplast membrane	6.70E-06
25	GO:0010007: magnesium chelatase complex	2.05E-05
26	GO:0005960: glycine cleavage complex	4.51E-05
27	GO:0048046: apoplast	4.94E-05
28	GO:0009508: plastid chromosome	8.21E-05
29	GO:0030076: light-harvesting complex	1.18E-04
30	GO:0055035: plastid thylakoid membrane	1.25E-04
31	GO:0016020: membrane	1.47E-04
32	GO:0042651: thylakoid membrane	1.86E-04
33	GO:0031361: integral component of thylakoid membrane	3.60E-04
34	GO:0009782: photosystem I antenna complex	3.60E-04
35	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.60E-04
36	GO:0009783: photosystem II antenna complex	3.60E-04
37	GO:0009515: granal stacked thylakoid	3.60E-04
38	GO:0009501: amyloplast	3.97E-04
39	GO:0009536: plastid	4.92E-04
40	GO:0009523: photosystem II	5.03E-04
41	GO:0009295: nucleoid	7.57E-04
42	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.83E-04
43	GO:0030093: chloroplast photosystem I	7.83E-04
44	GO:0009528: plastid inner membrane	1.27E-03
45	GO:0033281: TAT protein transport complex	1.27E-03
46	GO:0015934: large ribosomal subunit	1.46E-03
47	GO:0015935: small ribosomal subunit	2.25E-03
48	GO:0009532: plastid stroma	2.25E-03
49	GO:0009517: PSII associated light-harvesting complex II	2.45E-03
50	GO:0009527: plastid outer membrane	2.45E-03
51	GO:0009840: chloroplastic endopeptidase Clp complex	4.67E-03
52	GO:0016272: prefoldin complex	4.67E-03
53	GO:0009533: chloroplast stromal thylakoid	5.52E-03
54	GO:0005623: cell	7.19E-03
55	GO:0000783: nuclear telomere cap complex	7.36E-03
56	GO:0042644: chloroplast nucleoid	8.35E-03
57	GO:0005763: mitochondrial small ribosomal subunit	8.35E-03
58	GO:0009574: preprophase band	1.40E-02
59	GO:0043234: protein complex	1.78E-02
60	GO:0022625: cytosolic large ribosomal subunit	2.55E-02