Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G48545

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0032780: negative regulation of ATPase activity0.00E+00
3GO:0019685: photosynthesis, dark reaction0.00E+00
4GO:0010343: singlet oxygen-mediated programmed cell death0.00E+00
5GO:0015871: choline transport0.00E+00
6GO:0045747: positive regulation of Notch signaling pathway0.00E+00
7GO:0009583: detection of light stimulus0.00E+00
8GO:0071000: response to magnetism0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
12GO:0032928: regulation of superoxide anion generation0.00E+00
13GO:0046294: formaldehyde catabolic process0.00E+00
14GO:0018316: peptide cross-linking via L-cystine0.00E+00
15GO:0009106: lipoate metabolic process0.00E+00
16GO:0097164: ammonium ion metabolic process0.00E+00
17GO:0009661: chromoplast organization0.00E+00
18GO:0036172: thiamine salvage0.00E+00
19GO:0016120: carotene biosynthetic process2.78E-06
20GO:0010190: cytochrome b6f complex assembly5.31E-06
21GO:0080005: photosystem stoichiometry adjustment8.88E-06
22GO:0006013: mannose metabolic process3.05E-05
23GO:2001141: regulation of RNA biosynthetic process6.61E-05
24GO:0009765: photosynthesis, light harvesting1.15E-04
25GO:0009902: chloroplast relocation1.15E-04
26GO:0010207: photosystem II assembly1.59E-04
27GO:0000304: response to singlet oxygen1.78E-04
28GO:0010117: photoprotection1.78E-04
29GO:0046283: anthocyanin-containing compound metabolic process1.78E-04
30GO:0009658: chloroplast organization4.04E-04
31GO:0042371: vitamin K biosynthetic process4.48E-04
32GO:0071454: cellular response to anoxia4.48E-04
33GO:0071461: cellular response to redox state4.48E-04
34GO:0080065: 4-alpha-methyl-delta7-sterol oxidation4.48E-04
35GO:0034970: histone H3-R2 methylation4.48E-04
36GO:0006285: base-excision repair, AP site formation4.48E-04
37GO:0010362: negative regulation of anion channel activity by blue light4.48E-04
38GO:0019343: cysteine biosynthetic process via cystathionine4.48E-04
39GO:0034972: histone H3-R26 methylation4.48E-04
40GO:0071266: 'de novo' L-methionine biosynthetic process4.48E-04
41GO:1902265: abscisic acid homeostasis4.48E-04
42GO:0071806: protein transmembrane transport4.48E-04
43GO:0034971: histone H3-R17 methylation4.48E-04
44GO:0072387: flavin adenine dinucleotide metabolic process4.48E-04
45GO:0019346: transsulfuration4.48E-04
46GO:0016117: carotenoid biosynthetic process5.20E-04
47GO:0048564: photosystem I assembly5.46E-04
48GO:0009787: regulation of abscisic acid-activated signaling pathway5.46E-04
49GO:0010118: stomatal movement5.75E-04
50GO:0071482: cellular response to light stimulus6.66E-04
51GO:1900426: positive regulation of defense response to bacterium9.39E-04
52GO:0009638: phototropism9.39E-04
53GO:0006529: asparagine biosynthetic process9.67E-04
54GO:0016122: xanthophyll metabolic process9.67E-04
55GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine9.67E-04
56GO:0080153: negative regulation of reductive pentose-phosphate cycle9.67E-04
57GO:0080185: effector dependent induction by symbiont of host immune response9.67E-04
58GO:0010275: NAD(P)H dehydrogenase complex assembly9.67E-04
59GO:1901529: positive regulation of anion channel activity9.67E-04
60GO:0060359: response to ammonium ion9.67E-04
61GO:0048255: mRNA stabilization9.67E-04
62GO:0010617: circadian regulation of calcium ion oscillation9.67E-04
63GO:0070981: L-asparagine biosynthetic process9.67E-04
64GO:0007154: cell communication9.67E-04
65GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation9.67E-04
66GO:0099402: plant organ development9.67E-04
67GO:0090603: sieve element differentiation9.67E-04
68GO:0034755: iron ion transmembrane transport9.67E-04
69GO:1904143: positive regulation of carotenoid biosynthetic process9.67E-04
70GO:2000071: regulation of defense response by callose deposition9.67E-04
71GO:0006352: DNA-templated transcription, initiation1.26E-03
72GO:0010351: lithium ion transport1.57E-03
73GO:0043157: response to cation stress1.57E-03
74GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.57E-03
75GO:0045910: negative regulation of DNA recombination1.57E-03
76GO:0009663: plasmodesma organization1.57E-03
77GO:0031022: nuclear migration along microfilament1.57E-03
78GO:1902448: positive regulation of shade avoidance1.57E-03
79GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion1.57E-03
80GO:1901672: positive regulation of systemic acquired resistance1.57E-03
81GO:0071492: cellular response to UV-A1.57E-03
82GO:0006696: ergosterol biosynthetic process1.57E-03
83GO:0009767: photosynthetic electron transport chain1.64E-03
84GO:0009785: blue light signaling pathway1.64E-03
85GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.28E-03
86GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.28E-03
87GO:0010371: regulation of gibberellin biosynthetic process2.28E-03
88GO:0009647: skotomorphogenesis2.28E-03
89GO:0033014: tetrapyrrole biosynthetic process2.28E-03
90GO:0090307: mitotic spindle assembly2.28E-03
91GO:0009399: nitrogen fixation2.28E-03
92GO:1901332: negative regulation of lateral root development2.28E-03
93GO:0050482: arachidonic acid secretion2.28E-03
94GO:0009963: positive regulation of flavonoid biosynthetic process2.28E-03
95GO:0010088: phloem development2.28E-03
96GO:0009637: response to blue light2.49E-03
97GO:0006542: glutamine biosynthetic process3.06E-03
98GO:0071486: cellular response to high light intensity3.06E-03
99GO:0042274: ribosomal small subunit biogenesis3.06E-03
100GO:0031122: cytoplasmic microtubule organization3.06E-03
101GO:0006221: pyrimidine nucleotide biosynthetic process3.06E-03
102GO:0006552: leucine catabolic process3.06E-03
103GO:0009649: entrainment of circadian clock3.06E-03
104GO:1902347: response to strigolactone3.06E-03
105GO:0034613: cellular protein localization3.06E-03
106GO:0016226: iron-sulfur cluster assembly3.40E-03
107GO:0009640: photomorphogenesis3.45E-03
108GO:0009229: thiamine diphosphate biosynthetic process3.93E-03
109GO:0009107: lipoate biosynthetic process3.93E-03
110GO:0016123: xanthophyll biosynthetic process3.93E-03
111GO:0098719: sodium ion import across plasma membrane3.93E-03
112GO:0010304: PSII associated light-harvesting complex II catabolic process4.86E-03
113GO:0016070: RNA metabolic process4.86E-03
114GO:0009959: negative gravitropism4.86E-03
115GO:0006555: methionine metabolic process4.86E-03
116GO:0060918: auxin transport4.86E-03
117GO:0031053: primary miRNA processing4.86E-03
118GO:0006796: phosphate-containing compound metabolic process4.86E-03
119GO:0033365: protein localization to organelle4.86E-03
120GO:1901371: regulation of leaf morphogenesis4.86E-03
121GO:0009117: nucleotide metabolic process4.86E-03
122GO:0009228: thiamine biosynthetic process4.86E-03
123GO:0009646: response to absence of light5.49E-03
124GO:0010019: chloroplast-nucleus signaling pathway5.87E-03
125GO:0010310: regulation of hydrogen peroxide metabolic process5.87E-03
126GO:0019509: L-methionine salvage from methylthioadenosine5.87E-03
127GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.87E-03
128GO:0034389: lipid particle organization5.87E-03
129GO:0009903: chloroplast avoidance movement5.87E-03
130GO:0010038: response to metal ion6.93E-03
131GO:0010161: red light signaling pathway6.93E-03
132GO:1900056: negative regulation of leaf senescence6.93E-03
133GO:0051510: regulation of unidimensional cell growth6.93E-03
134GO:0009396: folic acid-containing compound biosynthetic process6.93E-03
135GO:0009231: riboflavin biosynthetic process8.07E-03
136GO:0006102: isocitrate metabolic process8.07E-03
137GO:0006644: phospholipid metabolic process8.07E-03
138GO:0045292: mRNA cis splicing, via spliceosome8.07E-03
139GO:0001522: pseudouridine synthesis8.07E-03
140GO:0010928: regulation of auxin mediated signaling pathway8.07E-03
141GO:0006605: protein targeting8.07E-03
142GO:0009704: de-etiolation8.07E-03
143GO:0050821: protein stabilization8.07E-03
144GO:0055114: oxidation-reduction process8.91E-03
145GO:0016126: sterol biosynthetic process9.16E-03
146GO:0022900: electron transport chain9.27E-03
147GO:0019430: removal of superoxide radicals9.27E-03
148GO:0032544: plastid translation9.27E-03
149GO:0015780: nucleotide-sugar transport1.05E-02
150GO:0009821: alkaloid biosynthetic process1.05E-02
151GO:0090305: nucleic acid phosphodiester bond hydrolysis1.05E-02
152GO:0046916: cellular transition metal ion homeostasis1.05E-02
153GO:0019432: triglyceride biosynthetic process1.05E-02
154GO:0006783: heme biosynthetic process1.05E-02
155GO:0051453: regulation of intracellular pH1.18E-02
156GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
157GO:0035999: tetrahydrofolate interconversion1.18E-02
158GO:0010380: regulation of chlorophyll biosynthetic process1.18E-02
159GO:0018298: protein-chromophore linkage1.20E-02
160GO:0045036: protein targeting to chloroplast1.32E-02
161GO:0009641: shade avoidance1.32E-02
162GO:0006298: mismatch repair1.32E-02
163GO:0051555: flavonol biosynthetic process1.32E-02
164GO:0006535: cysteine biosynthetic process from serine1.32E-02
165GO:0000103: sulfate assimilation1.32E-02
166GO:0006811: ion transport1.32E-02
167GO:0009688: abscisic acid biosynthetic process1.32E-02
168GO:0009416: response to light stimulus1.36E-02
169GO:0007568: aging1.39E-02
170GO:0043085: positive regulation of catalytic activity1.46E-02
171GO:0009682: induced systemic resistance1.46E-02
172GO:0008285: negative regulation of cell proliferation1.46E-02
173GO:0006879: cellular iron ion homeostasis1.46E-02
174GO:0045037: protein import into chloroplast stroma1.61E-02
175GO:0010228: vegetative to reproductive phase transition of meristem1.69E-02
176GO:0010075: regulation of meristem growth1.77E-02
177GO:0030048: actin filament-based movement1.77E-02
178GO:0034605: cellular response to heat1.92E-02
179GO:0006541: glutamine metabolic process1.92E-02
180GO:0019253: reductive pentose-phosphate cycle1.92E-02
181GO:0009744: response to sucrose1.97E-02
182GO:0090351: seedling development2.09E-02
183GO:0006071: glycerol metabolic process2.26E-02
184GO:0000162: tryptophan biosynthetic process2.26E-02
185GO:2000377: regulation of reactive oxygen species metabolic process2.43E-02
186GO:0019344: cysteine biosynthetic process2.43E-02
187GO:0010073: meristem maintenance2.61E-02
188GO:0007017: microtubule-based process2.61E-02
189GO:0006508: proteolysis2.77E-02
190GO:0019915: lipid storage2.79E-02
191GO:2000022: regulation of jasmonic acid mediated signaling pathway2.97E-02
192GO:0010227: floral organ abscission3.16E-02
193GO:0006012: galactose metabolic process3.16E-02
194GO:0006284: base-excision repair3.36E-02
195GO:0070417: cellular response to cold3.56E-02
196GO:0010051: xylem and phloem pattern formation3.76E-02
197GO:0046777: protein autophosphorylation3.92E-02
198GO:0009958: positive gravitropism3.96E-02
199GO:0006662: glycerol ether metabolic process3.96E-02
200GO:0006814: sodium ion transport4.17E-02
201GO:0042752: regulation of circadian rhythm4.17E-02
202GO:0009851: auxin biosynthetic process4.38E-02
203GO:0009791: post-embryonic development4.38E-02
204GO:0002229: defense response to oomycetes4.60E-02
205GO:0009630: gravitropism4.82E-02
206GO:0007264: small GTPase mediated signal transduction4.82E-02
207GO:0009058: biosynthetic process4.96E-02
RankGO TermAdjusted P value
1GO:0042030: ATPase inhibitor activity0.00E+00
2GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0045436: lycopene beta cyclase activity0.00E+00
7GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
8GO:0018738: S-formylglutathione hydrolase activity0.00E+00
9GO:0015220: choline transmembrane transporter activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
12GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0004180: carboxypeptidase activity3.05E-05
15GO:0004848: ureidoglycolate hydrolase activity3.05E-05
16GO:0009882: blue light photoreceptor activity6.61E-05
17GO:0000254: C-4 methylsterol oxidase activity6.61E-05
18GO:0048038: quinone binding8.64E-05
19GO:0001053: plastid sigma factor activity1.15E-04
20GO:0016987: sigma factor activity1.15E-04
21GO:0004559: alpha-mannosidase activity3.40E-04
22GO:0030941: chloroplast targeting sequence binding4.48E-04
23GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.48E-04
24GO:0004485: methylcrotonoyl-CoA carboxylase activity4.48E-04
25GO:0004123: cystathionine gamma-lyase activity4.48E-04
26GO:0046906: tetrapyrrole binding4.48E-04
27GO:0033984: indole-3-glycerol-phosphate lyase activity4.48E-04
28GO:0016783: sulfurtransferase activity4.48E-04
29GO:0004071: aspartate-ammonia ligase activity4.48E-04
30GO:0004325: ferrochelatase activity4.48E-04
31GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity4.48E-04
32GO:0004121: cystathionine beta-lyase activity4.48E-04
33GO:0051996: squalene synthase activity4.48E-04
34GO:0016491: oxidoreductase activity4.86E-04
35GO:0008080: N-acetyltransferase activity6.33E-04
36GO:0071949: FAD binding7.98E-04
37GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.67E-04
38GO:0017118: lipoyltransferase activity9.67E-04
39GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity9.67E-04
40GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity9.67E-04
41GO:0016415: octanoyltransferase activity9.67E-04
42GO:0004047: aminomethyltransferase activity9.67E-04
43GO:0004450: isocitrate dehydrogenase (NADP+) activity9.67E-04
44GO:0004046: aminoacylase activity9.67E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.67E-04
46GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity9.67E-04
47GO:0035241: protein-arginine omega-N monomethyltransferase activity9.67E-04
48GO:0008469: histone-arginine N-methyltransferase activity1.57E-03
49GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.57E-03
50GO:0003962: cystathionine gamma-synthase activity1.57E-03
51GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.57E-03
52GO:0032947: protein complex scaffold1.57E-03
53GO:0019003: GDP binding1.57E-03
54GO:0004075: biotin carboxylase activity1.57E-03
55GO:0003935: GTP cyclohydrolase II activity1.57E-03
56GO:0004222: metalloendopeptidase activity2.09E-03
57GO:0047627: adenylylsulfatase activity2.28E-03
58GO:0009001: serine O-acetyltransferase activity2.28E-03
59GO:0004792: thiosulfate sulfurtransferase activity2.28E-03
60GO:0016851: magnesium chelatase activity2.28E-03
61GO:0000339: RNA cap binding2.28E-03
62GO:0003824: catalytic activity2.56E-03
63GO:0004834: tryptophan synthase activity3.06E-03
64GO:0051861: glycolipid binding3.06E-03
65GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.06E-03
66GO:0019104: DNA N-glycosylase activity3.06E-03
67GO:0043015: gamma-tubulin binding3.06E-03
68GO:0004176: ATP-dependent peptidase activity3.11E-03
69GO:0004356: glutamate-ammonia ligase activity3.93E-03
70GO:0016407: acetyltransferase activity3.93E-03
71GO:0051011: microtubule minus-end binding3.93E-03
72GO:0004623: phospholipase A2 activity3.93E-03
73GO:0030983: mismatched DNA binding4.86E-03
74GO:0000293: ferric-chelate reductase activity4.86E-03
75GO:0004784: superoxide dismutase activity4.86E-03
76GO:0015081: sodium ion transmembrane transporter activity4.86E-03
77GO:0015631: tubulin binding5.87E-03
78GO:0004144: diacylglycerol O-acyltransferase activity5.87E-03
79GO:0008168: methyltransferase activity6.67E-03
80GO:0004518: nuclease activity6.75E-03
81GO:0005338: nucleotide-sugar transmembrane transporter activity6.93E-03
82GO:0004427: inorganic diphosphatase activity6.93E-03
83GO:0016621: cinnamoyl-CoA reductase activity6.93E-03
84GO:0019899: enzyme binding6.93E-03
85GO:0022857: transmembrane transporter activity7.34E-03
86GO:0004034: aldose 1-epimerase activity8.07E-03
87GO:0008237: metallopeptidase activity8.15E-03
88GO:0046914: transition metal ion binding9.27E-03
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.09E-02
90GO:0008236: serine-type peptidase activity1.14E-02
91GO:0016844: strictosidine synthase activity1.18E-02
92GO:0005381: iron ion transmembrane transporter activity1.18E-02
93GO:0004713: protein tyrosine kinase activity1.32E-02
94GO:0015386: potassium:proton antiporter activity1.46E-02
95GO:0004129: cytochrome-c oxidase activity1.46E-02
96GO:0005506: iron ion binding1.62E-02
97GO:0031072: heat shock protein binding1.77E-02
98GO:0000155: phosphorelay sensor kinase activity1.77E-02
99GO:0009982: pseudouridine synthase activity1.77E-02
100GO:0015266: protein channel activity1.77E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.92E-02
102GO:0042802: identical protein binding2.16E-02
103GO:0051536: iron-sulfur cluster binding2.43E-02
104GO:0005528: FK506 binding2.43E-02
105GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.65E-02
106GO:0046872: metal ion binding3.04E-02
107GO:0047134: protein-disulfide reductase activity3.56E-02
108GO:0004386: helicase activity4.11E-02
109GO:0004791: thioredoxin-disulfide reductase activity4.17E-02
110GO:0016853: isomerase activity4.17E-02
111GO:0050662: coenzyme binding4.17E-02
112GO:0010181: FMN binding4.17E-02
113GO:0042803: protein homodimerization activity4.76E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0097218: sieve plate0.00E+00
3GO:0009507: chloroplast1.77E-27
4GO:0009535: chloroplast thylakoid membrane1.94E-14
5GO:0031969: chloroplast membrane2.46E-06
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.13E-05
7GO:0042651: thylakoid membrane2.91E-04
8GO:0031972: chloroplast intermembrane space4.48E-04
9GO:0000152: nuclear ubiquitin ligase complex4.48E-04
10GO:0005845: mRNA cap binding complex4.48E-04
11GO:0042644: chloroplast nucleoid7.98E-04
12GO:0016604: nuclear body9.39E-04
13GO:0008274: gamma-tubulin ring complex9.67E-04
14GO:0005846: nuclear cap binding complex9.67E-04
15GO:0009941: chloroplast envelope1.32E-03
16GO:0016605: PML body1.57E-03
17GO:0009528: plastid inner membrane1.57E-03
18GO:0009570: chloroplast stroma1.75E-03
19GO:0000923: equatorial microtubule organizing center2.28E-03
20GO:0042646: plastid nucleoid2.28E-03
21GO:0009527: plastid outer membrane3.06E-03
22GO:0030286: dynein complex3.06E-03
23GO:0009517: PSII associated light-harvesting complex II3.06E-03
24GO:0009536: plastid3.34E-03
25GO:0055035: plastid thylakoid membrane3.93E-03
26GO:0009534: chloroplast thylakoid6.15E-03
27GO:0031359: integral component of chloroplast outer membrane6.93E-03
28GO:0046930: pore complex9.27E-03
29GO:0005811: lipid particle9.27E-03
30GO:0000922: spindle pole1.05E-02
31GO:0009707: chloroplast outer membrane1.20E-02
32GO:0005875: microtubule associated complex2.26E-02
33GO:0005769: early endosome2.26E-02
34GO:0043234: protein complex2.26E-02
35GO:0005744: mitochondrial inner membrane presequence translocase complex3.36E-02
36GO:0009706: chloroplast inner membrane3.77E-02
37GO:0009523: photosystem II4.38E-02
38GO:0009543: chloroplast thylakoid lumen4.71E-02
39GO:0005623: cell4.84E-02
40GO:0005777: peroxisome5.00E-02
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Gene type



Gene DE type