GO Enrichment Analysis of Co-expressed Genes with
AT5G48220
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 8 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 9 | GO:0090391: granum assembly | 1.41E-09 |
| 10 | GO:0009642: response to light intensity | 4.21E-07 |
| 11 | GO:0010027: thylakoid membrane organization | 1.87E-06 |
| 12 | GO:0010207: photosystem II assembly | 4.38E-06 |
| 13 | GO:0006021: inositol biosynthetic process | 7.70E-06 |
| 14 | GO:0046855: inositol phosphate dephosphorylation | 1.95E-05 |
| 15 | GO:0010196: nonphotochemical quenching | 3.77E-05 |
| 16 | GO:0048564: photosystem I assembly | 4.94E-05 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 9.14E-05 |
| 18 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.14E-05 |
| 19 | GO:0000481: maturation of 5S rRNA | 9.14E-05 |
| 20 | GO:1904964: positive regulation of phytol biosynthetic process | 9.14E-05 |
| 21 | GO:0043686: co-translational protein modification | 9.14E-05 |
| 22 | GO:0006436: tryptophanyl-tRNA aminoacylation | 9.14E-05 |
| 23 | GO:0043007: maintenance of rDNA | 9.14E-05 |
| 24 | GO:0010028: xanthophyll cycle | 9.14E-05 |
| 25 | GO:0034337: RNA folding | 9.14E-05 |
| 26 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 9.14E-05 |
| 27 | GO:0006419: alanyl-tRNA aminoacylation | 9.14E-05 |
| 28 | GO:0018298: protein-chromophore linkage | 9.51E-05 |
| 29 | GO:0043085: positive regulation of catalytic activity | 1.33E-04 |
| 30 | GO:0006790: sulfur compound metabolic process | 1.54E-04 |
| 31 | GO:0030187: melatonin biosynthetic process | 2.16E-04 |
| 32 | GO:0006432: phenylalanyl-tRNA aminoacylation | 2.16E-04 |
| 33 | GO:0000256: allantoin catabolic process | 2.16E-04 |
| 34 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.16E-04 |
| 35 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.16E-04 |
| 36 | GO:0006435: threonyl-tRNA aminoacylation | 2.16E-04 |
| 37 | GO:0046854: phosphatidylinositol phosphorylation | 2.28E-04 |
| 38 | GO:0009793: embryo development ending in seed dormancy | 2.33E-04 |
| 39 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.15E-04 |
| 40 | GO:0010136: ureide catabolic process | 3.61E-04 |
| 41 | GO:0071492: cellular response to UV-A | 3.61E-04 |
| 42 | GO:0009405: pathogenesis | 3.61E-04 |
| 43 | GO:0015979: photosynthesis | 3.79E-04 |
| 44 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.20E-04 |
| 45 | GO:0046739: transport of virus in multicellular host | 5.20E-04 |
| 46 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.20E-04 |
| 47 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.20E-04 |
| 48 | GO:0006020: inositol metabolic process | 5.20E-04 |
| 49 | GO:0006145: purine nucleobase catabolic process | 5.20E-04 |
| 50 | GO:0006662: glycerol ether metabolic process | 5.66E-04 |
| 51 | GO:0071486: cellular response to high light intensity | 6.90E-04 |
| 52 | GO:0006109: regulation of carbohydrate metabolic process | 6.90E-04 |
| 53 | GO:0015994: chlorophyll metabolic process | 6.90E-04 |
| 54 | GO:0006413: translational initiation | 8.31E-04 |
| 55 | GO:0031365: N-terminal protein amino acid modification | 8.73E-04 |
| 56 | GO:0042549: photosystem II stabilization | 1.07E-03 |
| 57 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.07E-03 |
| 58 | GO:0009645: response to low light intensity stimulus | 1.49E-03 |
| 59 | GO:0006400: tRNA modification | 1.49E-03 |
| 60 | GO:0034599: cellular response to oxidative stress | 1.67E-03 |
| 61 | GO:0032508: DNA duplex unwinding | 1.72E-03 |
| 62 | GO:0032544: plastid translation | 1.96E-03 |
| 63 | GO:0017004: cytochrome complex assembly | 1.96E-03 |
| 64 | GO:0071482: cellular response to light stimulus | 1.96E-03 |
| 65 | GO:0009657: plastid organization | 1.96E-03 |
| 66 | GO:0080167: response to karrikin | 2.04E-03 |
| 67 | GO:0009821: alkaloid biosynthetic process | 2.21E-03 |
| 68 | GO:0098656: anion transmembrane transport | 2.21E-03 |
| 69 | GO:0009644: response to high light intensity | 2.21E-03 |
| 70 | GO:0072593: reactive oxygen species metabolic process | 3.03E-03 |
| 71 | GO:0006415: translational termination | 3.03E-03 |
| 72 | GO:0006006: glucose metabolic process | 3.63E-03 |
| 73 | GO:0019253: reductive pentose-phosphate cycle | 3.93E-03 |
| 74 | GO:0019853: L-ascorbic acid biosynthetic process | 4.26E-03 |
| 75 | GO:0019953: sexual reproduction | 5.27E-03 |
| 76 | GO:0008299: isoprenoid biosynthetic process | 5.27E-03 |
| 77 | GO:0006418: tRNA aminoacylation for protein translation | 5.27E-03 |
| 78 | GO:0019915: lipid storage | 5.62E-03 |
| 79 | GO:0006012: galactose metabolic process | 6.35E-03 |
| 80 | GO:0009561: megagametogenesis | 6.73E-03 |
| 81 | GO:0055072: iron ion homeostasis | 8.74E-03 |
| 82 | GO:0002229: defense response to oomycetes | 9.16E-03 |
| 83 | GO:0016032: viral process | 9.60E-03 |
| 84 | GO:0042128: nitrate assimilation | 1.28E-02 |
| 85 | GO:0015995: chlorophyll biosynthetic process | 1.33E-02 |
| 86 | GO:0048481: plant ovule development | 1.43E-02 |
| 87 | GO:0009817: defense response to fungus, incompatible interaction | 1.43E-02 |
| 88 | GO:0010218: response to far red light | 1.54E-02 |
| 89 | GO:0045454: cell redox homeostasis | 1.54E-02 |
| 90 | GO:0007568: aging | 1.59E-02 |
| 91 | GO:0009637: response to blue light | 1.69E-02 |
| 92 | GO:0009853: photorespiration | 1.69E-02 |
| 93 | GO:0010114: response to red light | 2.03E-02 |
| 94 | GO:0009409: response to cold | 2.47E-02 |
| 95 | GO:0006364: rRNA processing | 2.51E-02 |
| 96 | GO:0006096: glycolytic process | 2.82E-02 |
| 97 | GO:0043086: negative regulation of catalytic activity | 2.82E-02 |
| 98 | GO:0006396: RNA processing | 3.29E-02 |
| 99 | GO:0009058: biosynthetic process | 3.93E-02 |
| 100 | GO:0055085: transmembrane transport | 4.28E-02 |
| 101 | GO:0010150: leaf senescence | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 4 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 5 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 8 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 9 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 10 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.47E-07 |
| 11 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.47E-07 |
| 12 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.47E-07 |
| 13 | GO:0070402: NADPH binding | 1.70E-06 |
| 14 | GO:0016168: chlorophyll binding | 2.11E-06 |
| 15 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.78E-05 |
| 16 | GO:0004830: tryptophan-tRNA ligase activity | 9.14E-05 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 9.14E-05 |
| 18 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 9.14E-05 |
| 19 | GO:0004813: alanine-tRNA ligase activity | 9.14E-05 |
| 20 | GO:0042586: peptide deformylase activity | 9.14E-05 |
| 21 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 9.14E-05 |
| 22 | GO:0008047: enzyme activator activity | 1.13E-04 |
| 23 | GO:0000049: tRNA binding | 1.54E-04 |
| 24 | GO:0031072: heat shock protein binding | 1.77E-04 |
| 25 | GO:0004829: threonine-tRNA ligase activity | 2.16E-04 |
| 26 | GO:0047746: chlorophyllase activity | 2.16E-04 |
| 27 | GO:0004826: phenylalanine-tRNA ligase activity | 2.16E-04 |
| 28 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.16E-04 |
| 29 | GO:0031409: pigment binding | 2.56E-04 |
| 30 | GO:0005528: FK506 binding | 2.85E-04 |
| 31 | GO:0004751: ribose-5-phosphate isomerase activity | 3.61E-04 |
| 32 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.61E-04 |
| 33 | GO:0022891: substrate-specific transmembrane transporter activity | 4.15E-04 |
| 34 | GO:0047134: protein-disulfide reductase activity | 4.87E-04 |
| 35 | GO:0046872: metal ion binding | 4.89E-04 |
| 36 | GO:0004792: thiosulfate sulfurtransferase activity | 5.20E-04 |
| 37 | GO:0016149: translation release factor activity, codon specific | 5.20E-04 |
| 38 | GO:0004791: thioredoxin-disulfide reductase activity | 6.07E-04 |
| 39 | GO:0016853: isomerase activity | 6.07E-04 |
| 40 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 6.90E-04 |
| 41 | GO:0008453: alanine-glyoxylate transaminase activity | 6.90E-04 |
| 42 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.90E-04 |
| 43 | GO:0043495: protein anchor | 6.90E-04 |
| 44 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.86E-04 |
| 45 | GO:0019899: enzyme binding | 1.49E-03 |
| 46 | GO:0004034: aldose 1-epimerase activity | 1.72E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 1.72E-03 |
| 48 | GO:0003747: translation release factor activity | 2.21E-03 |
| 49 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.21E-03 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.38E-03 |
| 51 | GO:0016844: strictosidine synthase activity | 2.48E-03 |
| 52 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.63E-03 |
| 53 | GO:0051082: unfolded protein binding | 3.89E-03 |
| 54 | GO:0015035: protein disulfide oxidoreductase activity | 4.00E-03 |
| 55 | GO:0004857: enzyme inhibitor activity | 4.92E-03 |
| 56 | GO:0004176: ATP-dependent peptidase activity | 5.62E-03 |
| 57 | GO:0008514: organic anion transmembrane transporter activity | 6.73E-03 |
| 58 | GO:0004812: aminoacyl-tRNA ligase activity | 7.11E-03 |
| 59 | GO:0003743: translation initiation factor activity | 7.82E-03 |
| 60 | GO:0008080: N-acetyltransferase activity | 7.91E-03 |
| 61 | GO:0048038: quinone binding | 9.16E-03 |
| 62 | GO:0016597: amino acid binding | 1.14E-02 |
| 63 | GO:0004721: phosphoprotein phosphatase activity | 1.33E-02 |
| 64 | GO:0030145: manganese ion binding | 1.59E-02 |
| 65 | GO:0003746: translation elongation factor activity | 1.69E-02 |
| 66 | GO:0050661: NADP binding | 1.86E-02 |
| 67 | GO:0005198: structural molecule activity | 2.20E-02 |
| 68 | GO:0051287: NAD binding | 2.32E-02 |
| 69 | GO:0003729: mRNA binding | 2.78E-02 |
| 70 | GO:0045735: nutrient reservoir activity | 2.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.52E-50 |
| 3 | GO:0009570: chloroplast stroma | 9.15E-24 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.96E-22 |
| 5 | GO:0009534: chloroplast thylakoid | 2.47E-15 |
| 6 | GO:0009941: chloroplast envelope | 7.28E-14 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.59E-09 |
| 8 | GO:0031977: thylakoid lumen | 2.18E-07 |
| 9 | GO:0009579: thylakoid | 3.16E-07 |
| 10 | GO:0009523: photosystem II | 6.89E-07 |
| 11 | GO:0009782: photosystem I antenna complex | 9.14E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 3.15E-04 |
| 13 | GO:0010287: plastoglobule | 5.68E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 6.49E-04 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.21E-03 |
| 16 | GO:0012511: monolayer-surrounded lipid storage body | 3.03E-03 |
| 17 | GO:0032040: small-subunit processome | 3.32E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 3.93E-03 |
| 19 | GO:0030076: light-harvesting complex | 4.26E-03 |
| 20 | GO:0005623: cell | 4.99E-03 |
| 21 | GO:0042651: thylakoid membrane | 5.27E-03 |
| 22 | GO:0005759: mitochondrial matrix | 6.10E-03 |
| 23 | GO:0009522: photosystem I | 8.32E-03 |
| 24 | GO:0005778: peroxisomal membrane | 1.09E-02 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 1.19E-02 |
| 26 | GO:0009536: plastid | 2.18E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 3.22E-02 |