GO Enrichment Analysis of Co-expressed Genes with
AT5G48030
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010513: positive regulation of phosphatidylinositol biosynthetic process | 0.00E+00 |
| 2 | GO:0046890: regulation of lipid biosynthetic process | 0.00E+00 |
| 3 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 4 | GO:0006412: translation | 4.86E-84 |
| 5 | GO:0042254: ribosome biogenesis | 6.83E-24 |
| 6 | GO:0000027: ribosomal large subunit assembly | 7.95E-14 |
| 7 | GO:0000028: ribosomal small subunit assembly | 6.19E-06 |
| 8 | GO:1902626: assembly of large subunit precursor of preribosome | 1.22E-05 |
| 9 | GO:0002181: cytoplasmic translation | 1.22E-05 |
| 10 | GO:0009651: response to salt stress | 7.93E-05 |
| 11 | GO:0009955: adaxial/abaxial pattern specification | 1.58E-04 |
| 12 | GO:0009735: response to cytokinin | 1.88E-04 |
| 13 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.72E-04 |
| 14 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.72E-04 |
| 15 | GO:1990258: histone glutamine methylation | 2.72E-04 |
| 16 | GO:0006407: rRNA export from nucleus | 2.72E-04 |
| 17 | GO:0015801: aromatic amino acid transport | 2.72E-04 |
| 18 | GO:2001006: regulation of cellulose biosynthetic process | 2.72E-04 |
| 19 | GO:0000494: box C/D snoRNA 3'-end processing | 2.72E-04 |
| 20 | GO:0080156: mitochondrial mRNA modification | 3.24E-04 |
| 21 | GO:0000387: spliceosomal snRNP assembly | 4.62E-04 |
| 22 | GO:0006435: threonyl-tRNA aminoacylation | 5.99E-04 |
| 23 | GO:0006432: phenylalanyl-tRNA aminoacylation | 5.99E-04 |
| 24 | GO:0071668: plant-type cell wall assembly | 5.99E-04 |
| 25 | GO:0045041: protein import into mitochondrial intermembrane space | 5.99E-04 |
| 26 | GO:0055088: lipid homeostasis | 5.99E-04 |
| 27 | GO:0009409: response to cold | 7.06E-04 |
| 28 | GO:0006820: anion transport | 7.11E-04 |
| 29 | GO:0006626: protein targeting to mitochondrion | 8.06E-04 |
| 30 | GO:0046168: glycerol-3-phosphate catabolic process | 9.72E-04 |
| 31 | GO:0071494: cellular response to UV-C | 9.72E-04 |
| 32 | GO:0042256: mature ribosome assembly | 9.72E-04 |
| 33 | GO:0008216: spermidine metabolic process | 9.72E-04 |
| 34 | GO:0008283: cell proliferation | 1.35E-03 |
| 35 | GO:0006241: CTP biosynthetic process | 1.39E-03 |
| 36 | GO:0006072: glycerol-3-phosphate metabolic process | 1.39E-03 |
| 37 | GO:0006165: nucleoside diphosphate phosphorylation | 1.39E-03 |
| 38 | GO:0006228: UTP biosynthetic process | 1.39E-03 |
| 39 | GO:0006164: purine nucleotide biosynthetic process | 1.39E-03 |
| 40 | GO:1902290: positive regulation of defense response to oomycetes | 1.39E-03 |
| 41 | GO:0070301: cellular response to hydrogen peroxide | 1.39E-03 |
| 42 | GO:0009965: leaf morphogenesis | 1.56E-03 |
| 43 | GO:0006183: GTP biosynthetic process | 1.86E-03 |
| 44 | GO:0009165: nucleotide biosynthetic process | 1.86E-03 |
| 45 | GO:1900864: mitochondrial RNA modification | 1.86E-03 |
| 46 | GO:0010387: COP9 signalosome assembly | 1.86E-03 |
| 47 | GO:0006414: translational elongation | 2.14E-03 |
| 48 | GO:0008033: tRNA processing | 2.27E-03 |
| 49 | GO:0071493: cellular response to UV-B | 2.37E-03 |
| 50 | GO:0031167: rRNA methylation | 2.37E-03 |
| 51 | GO:0009793: embryo development ending in seed dormancy | 2.54E-03 |
| 52 | GO:0000741: karyogamy | 2.93E-03 |
| 53 | GO:0000911: cytokinesis by cell plate formation | 3.52E-03 |
| 54 | GO:0042026: protein refolding | 3.52E-03 |
| 55 | GO:0006458: 'de novo' protein folding | 3.52E-03 |
| 56 | GO:0016444: somatic cell DNA recombination | 3.52E-03 |
| 57 | GO:0000398: mRNA splicing, via spliceosome | 3.70E-03 |
| 58 | GO:0000338: protein deneddylation | 4.15E-03 |
| 59 | GO:0006826: iron ion transport | 4.15E-03 |
| 60 | GO:0071446: cellular response to salicylic acid stimulus | 4.15E-03 |
| 61 | GO:1900150: regulation of defense response to fungus | 4.82E-03 |
| 62 | GO:0050821: protein stabilization | 4.82E-03 |
| 63 | GO:0009627: systemic acquired resistance | 4.86E-03 |
| 64 | GO:0001510: RNA methylation | 5.52E-03 |
| 65 | GO:0009808: lignin metabolic process | 5.52E-03 |
| 66 | GO:0009245: lipid A biosynthetic process | 6.25E-03 |
| 67 | GO:0006189: 'de novo' IMP biosynthetic process | 6.25E-03 |
| 68 | GO:0048589: developmental growth | 6.25E-03 |
| 69 | GO:0009060: aerobic respiration | 6.25E-03 |
| 70 | GO:0098656: anion transmembrane transport | 6.25E-03 |
| 71 | GO:0007338: single fertilization | 6.25E-03 |
| 72 | GO:0006913: nucleocytoplasmic transport | 8.66E-03 |
| 73 | GO:0010015: root morphogenesis | 8.66E-03 |
| 74 | GO:0009644: response to high light intensity | 1.01E-02 |
| 75 | GO:0010102: lateral root morphogenesis | 1.04E-02 |
| 76 | GO:2000028: regulation of photoperiodism, flowering | 1.04E-02 |
| 77 | GO:0010020: chloroplast fission | 1.13E-02 |
| 78 | GO:0006446: regulation of translational initiation | 1.13E-02 |
| 79 | GO:0048467: gynoecium development | 1.13E-02 |
| 80 | GO:0010039: response to iron ion | 1.23E-02 |
| 81 | GO:0006364: rRNA processing | 1.26E-02 |
| 82 | GO:0034976: response to endoplasmic reticulum stress | 1.33E-02 |
| 83 | GO:0009863: salicylic acid mediated signaling pathway | 1.43E-02 |
| 84 | GO:0030150: protein import into mitochondrial matrix | 1.43E-02 |
| 85 | GO:0009116: nucleoside metabolic process | 1.43E-02 |
| 86 | GO:0061077: chaperone-mediated protein folding | 1.64E-02 |
| 87 | GO:0003333: amino acid transmembrane transport | 1.64E-02 |
| 88 | GO:0006334: nucleosome assembly | 1.64E-02 |
| 89 | GO:0016226: iron-sulfur cluster assembly | 1.75E-02 |
| 90 | GO:0007005: mitochondrion organization | 1.75E-02 |
| 91 | GO:0010197: polar nucleus fusion | 2.33E-02 |
| 92 | GO:0006635: fatty acid beta-oxidation | 2.71E-02 |
| 93 | GO:0032502: developmental process | 2.84E-02 |
| 94 | GO:0010090: trichome morphogenesis | 2.97E-02 |
| 95 | GO:0009567: double fertilization forming a zygote and endosperm | 3.10E-02 |
| 96 | GO:0010029: regulation of seed germination | 3.66E-02 |
| 97 | GO:0009617: response to bacterium | 3.70E-02 |
| 98 | GO:0010311: lateral root formation | 4.40E-02 |
| 99 | GO:0006811: ion transport | 4.55E-02 |
| 100 | GO:0000724: double-strand break repair via homologous recombination | 4.86E-02 |
| 101 | GO:0006865: amino acid transport | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 7.76E-106 |
| 3 | GO:0003729: mRNA binding | 2.10E-33 |
| 4 | GO:0019843: rRNA binding | 5.20E-11 |
| 5 | GO:0003723: RNA binding | 4.62E-06 |
| 6 | GO:0008097: 5S rRNA binding | 2.76E-05 |
| 7 | GO:0003697: single-stranded DNA binding | 1.13E-04 |
| 8 | GO:0015288: porin activity | 2.62E-04 |
| 9 | GO:0072547: tricoumaroylspermidine meta-hydroxylase activity | 2.72E-04 |
| 10 | GO:0072549: monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity | 2.72E-04 |
| 11 | GO:0072548: dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity | 2.72E-04 |
| 12 | GO:1990259: histone-glutamine methyltransferase activity | 2.72E-04 |
| 13 | GO:0035614: snRNA stem-loop binding | 2.72E-04 |
| 14 | GO:0008308: voltage-gated anion channel activity | 3.23E-04 |
| 15 | GO:0004839: ubiquitin activating enzyme activity | 5.99E-04 |
| 16 | GO:0004826: phenylalanine-tRNA ligase activity | 5.99E-04 |
| 17 | GO:0004829: threonine-tRNA ligase activity | 5.99E-04 |
| 18 | GO:0030619: U1 snRNA binding | 5.99E-04 |
| 19 | GO:0015173: aromatic amino acid transmembrane transporter activity | 5.99E-04 |
| 20 | GO:0070181: small ribosomal subunit rRNA binding | 9.72E-04 |
| 21 | GO:0008649: rRNA methyltransferase activity | 9.72E-04 |
| 22 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 9.72E-04 |
| 23 | GO:0004550: nucleoside diphosphate kinase activity | 1.39E-03 |
| 24 | GO:0004749: ribose phosphate diphosphokinase activity | 1.39E-03 |
| 25 | GO:0008641: small protein activating enzyme activity | 2.37E-03 |
| 26 | GO:0005275: amine transmembrane transporter activity | 2.37E-03 |
| 27 | GO:0031177: phosphopantetheine binding | 2.93E-03 |
| 28 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 2.93E-03 |
| 29 | GO:0000035: acyl binding | 3.52E-03 |
| 30 | GO:0042162: telomeric DNA binding | 4.15E-03 |
| 31 | GO:0030515: snoRNA binding | 4.15E-03 |
| 32 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.82E-03 |
| 33 | GO:0043022: ribosome binding | 4.82E-03 |
| 34 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.68E-03 |
| 35 | GO:0001055: RNA polymerase II activity | 7.03E-03 |
| 36 | GO:0003746: translation elongation factor activity | 7.20E-03 |
| 37 | GO:0001054: RNA polymerase I activity | 8.66E-03 |
| 38 | GO:0044183: protein binding involved in protein folding | 8.66E-03 |
| 39 | GO:0001056: RNA polymerase III activity | 9.52E-03 |
| 40 | GO:0000049: tRNA binding | 9.52E-03 |
| 41 | GO:0015266: protein channel activity | 1.04E-02 |
| 42 | GO:0051087: chaperone binding | 1.53E-02 |
| 43 | GO:0003756: protein disulfide isomerase activity | 1.97E-02 |
| 44 | GO:0008237: metallopeptidase activity | 3.24E-02 |
| 45 | GO:0050897: cobalt ion binding | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097361: CIA complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005840: ribosome | 2.89E-74 |
| 4 | GO:0022626: cytosolic ribosome | 2.45E-63 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 9.94E-53 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 1.38E-42 |
| 7 | GO:0005730: nucleolus | 8.66E-26 |
| 8 | GO:0005829: cytosol | 9.56E-24 |
| 9 | GO:0005737: cytoplasm | 1.87E-17 |
| 10 | GO:0005774: vacuolar membrane | 5.29E-14 |
| 11 | GO:0009506: plasmodesma | 6.28E-14 |
| 12 | GO:0016020: membrane | 2.41E-11 |
| 13 | GO:0015934: large ribosomal subunit | 1.84E-10 |
| 14 | GO:0005773: vacuole | 2.00E-06 |
| 15 | GO:0015935: small ribosomal subunit | 4.53E-06 |
| 16 | GO:0005618: cell wall | 9.25E-06 |
| 17 | GO:0005732: small nucleolar ribonucleoprotein complex | 7.85E-05 |
| 18 | GO:0030686: 90S preribosome | 2.72E-04 |
| 19 | GO:0005742: mitochondrial outer membrane translocase complex | 3.23E-04 |
| 20 | GO:0046930: pore complex | 3.23E-04 |
| 21 | GO:0005685: U1 snRNP | 3.90E-04 |
| 22 | GO:0005697: telomerase holoenzyme complex | 5.99E-04 |
| 23 | GO:0048471: perinuclear region of cytoplasm | 6.22E-04 |
| 24 | GO:0005739: mitochondrion | 6.40E-04 |
| 25 | GO:0019013: viral nucleocapsid | 8.06E-04 |
| 26 | GO:0034719: SMN-Sm protein complex | 9.72E-04 |
| 27 | GO:0005853: eukaryotic translation elongation factor 1 complex | 9.72E-04 |
| 28 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.39E-03 |
| 29 | GO:0005741: mitochondrial outer membrane | 1.50E-03 |
| 30 | GO:0005682: U5 snRNP | 1.86E-03 |
| 31 | GO:0005687: U4 snRNP | 2.37E-03 |
| 32 | GO:0097526: spliceosomal tri-snRNP complex | 2.37E-03 |
| 33 | GO:0005681: spliceosomal complex | 2.44E-03 |
| 34 | GO:0009507: chloroplast | 2.48E-03 |
| 35 | GO:0031428: box C/D snoRNP complex | 2.93E-03 |
| 36 | GO:0009706: chloroplast inner membrane | 3.08E-03 |
| 37 | GO:0005886: plasma membrane | 3.25E-03 |
| 38 | GO:0005762: mitochondrial large ribosomal subunit | 3.52E-03 |
| 39 | GO:0005689: U12-type spliceosomal complex | 3.52E-03 |
| 40 | GO:0071004: U2-type prespliceosome | 4.82E-03 |
| 41 | GO:0008180: COP9 signalosome | 6.25E-03 |
| 42 | GO:0005763: mitochondrial small ribosomal subunit | 6.25E-03 |
| 43 | GO:0005736: DNA-directed RNA polymerase I complex | 6.25E-03 |
| 44 | GO:0005666: DNA-directed RNA polymerase III complex | 7.03E-03 |
| 45 | GO:0071011: precatalytic spliceosome | 7.03E-03 |
| 46 | GO:0015030: Cajal body | 7.03E-03 |
| 47 | GO:0005686: U2 snRNP | 7.82E-03 |
| 48 | GO:0000418: DNA-directed RNA polymerase IV complex | 7.82E-03 |
| 49 | GO:0005852: eukaryotic translation initiation factor 3 complex | 8.66E-03 |
| 50 | GO:0071013: catalytic step 2 spliceosome | 8.66E-03 |
| 51 | GO:0005665: DNA-directed RNA polymerase II, core complex | 9.52E-03 |
| 52 | GO:0032040: small-subunit processome | 9.52E-03 |
| 53 | GO:0009508: plastid chromosome | 1.04E-02 |
| 54 | GO:0000419: DNA-directed RNA polymerase V complex | 1.33E-02 |
| 55 | GO:0005758: mitochondrial intermembrane space | 1.43E-02 |
| 56 | GO:0070469: respiratory chain | 1.53E-02 |
| 57 | GO:0005747: mitochondrial respiratory chain complex I | 1.54E-02 |
| 58 | GO:0005743: mitochondrial inner membrane | 2.12E-02 |
| 59 | GO:0005622: intracellular | 3.21E-02 |
| 60 | GO:0009295: nucleoid | 3.24E-02 |
| 61 | GO:0000786: nucleosome | 4.86E-02 |