Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
2GO:0007530: sex determination0.00E+00
3GO:1990258: histone glutamine methylation0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
6GO:0090239: regulation of histone H4 acetylation0.00E+00
7GO:0044843: cell cycle G1/S phase transition0.00E+00
8GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
9GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
10GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
11GO:0034050: host programmed cell death induced by symbiont0.00E+00
12GO:0046487: glyoxylate metabolic process0.00E+00
13GO:0006412: translation1.88E-159
14GO:0042254: ribosome biogenesis7.06E-57
15GO:0000027: ribosomal large subunit assembly8.96E-14
16GO:0006626: protein targeting to mitochondrion6.48E-11
17GO:0000028: ribosomal small subunit assembly6.85E-07
18GO:0009735: response to cytokinin7.54E-06
19GO:0009955: adaxial/abaxial pattern specification1.58E-05
20GO:0000398: mRNA splicing, via spliceosome1.64E-05
21GO:1902626: assembly of large subunit precursor of preribosome4.54E-05
22GO:0002181: cytoplasmic translation4.54E-05
23GO:0000387: spliceosomal snRNP assembly9.01E-05
24GO:0006820: anion transport1.75E-04
25GO:0031167: rRNA methylation2.52E-04
26GO:0006364: rRNA processing2.82E-04
27GO:0045040: protein import into mitochondrial outer membrane3.54E-04
28GO:0043248: proteasome assembly3.54E-04
29GO:0030150: protein import into mitochondrial matrix3.93E-04
30GO:0009554: megasporogenesis4.72E-04
31GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.57E-04
32GO:0018002: N-terminal peptidyl-glutamic acid acetylation5.57E-04
33GO:0032365: intracellular lipid transport5.57E-04
34GO:0006407: rRNA export from nucleus5.57E-04
35GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process5.57E-04
36GO:0031120: snRNA pseudouridine synthesis5.57E-04
37GO:0006475: internal protein amino acid acetylation5.57E-04
38GO:0031118: rRNA pseudouridine synthesis5.57E-04
39GO:0015801: aromatic amino acid transport5.57E-04
40GO:0017198: N-terminal peptidyl-serine acetylation5.57E-04
41GO:0030490: maturation of SSU-rRNA5.57E-04
42GO:0006434: seryl-tRNA aminoacylation5.57E-04
43GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.57E-04
44GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.04E-04
45GO:0001510: RNA methylation9.15E-04
46GO:0009793: embryo development ending in seed dormancy9.78E-04
47GO:0098656: anion transmembrane transport1.09E-03
48GO:0009967: positive regulation of signal transduction1.20E-03
49GO:0051788: response to misfolded protein1.20E-03
50GO:0015786: UDP-glucose transport1.20E-03
51GO:0045859: regulation of protein kinase activity1.20E-03
52GO:0045905: positive regulation of translational termination1.20E-03
53GO:0009156: ribonucleoside monophosphate biosynthetic process1.20E-03
54GO:2000072: regulation of defense response to fungus, incompatible interaction1.20E-03
55GO:0045901: positive regulation of translational elongation1.20E-03
56GO:0048569: post-embryonic animal organ development1.20E-03
57GO:0043981: histone H4-K5 acetylation1.20E-03
58GO:0006452: translational frameshifting1.20E-03
59GO:0006413: translational initiation1.26E-03
60GO:1904278: positive regulation of wax biosynthetic process1.97E-03
61GO:0009150: purine ribonucleotide metabolic process1.97E-03
62GO:0015783: GDP-fucose transport1.97E-03
63GO:0042256: mature ribosome assembly1.97E-03
64GO:0010452: histone H3-K36 methylation1.97E-03
65GO:0006414: translational elongation2.20E-03
66GO:0048467: gynoecium development2.56E-03
67GO:0006241: CTP biosynthetic process2.86E-03
68GO:0072334: UDP-galactose transmembrane transport2.86E-03
69GO:0009647: skotomorphogenesis2.86E-03
70GO:0006165: nucleoside diphosphate phosphorylation2.86E-03
71GO:0006228: UTP biosynthetic process2.86E-03
72GO:0006164: purine nucleotide biosynthetic process2.86E-03
73GO:0046513: ceramide biosynthetic process2.86E-03
74GO:0007004: telomere maintenance via telomerase2.86E-03
75GO:0070301: cellular response to hydrogen peroxide2.86E-03
76GO:0009165: nucleotide biosynthetic process3.85E-03
77GO:0042274: ribosomal small subunit biogenesis3.85E-03
78GO:0006183: GTP biosynthetic process3.85E-03
79GO:0007005: mitochondrion organization4.74E-03
80GO:0019408: dolichol biosynthetic process4.94E-03
81GO:1902183: regulation of shoot apical meristem development4.94E-03
82GO:0008283: cell proliferation5.27E-03
83GO:0016070: RNA metabolic process6.12E-03
84GO:0051568: histone H3-K4 methylation6.12E-03
85GO:0000470: maturation of LSU-rRNA6.12E-03
86GO:0008033: tRNA processing6.61E-03
87GO:0009908: flower development6.71E-03
88GO:0006458: 'de novo' protein folding7.40E-03
89GO:0000245: spliceosomal complex assembly7.40E-03
90GO:1901001: negative regulation of response to salt stress7.40E-03
91GO:0010183: pollen tube guidance8.23E-03
92GO:0009645: response to low light intensity stimulus8.76E-03
93GO:0048528: post-embryonic root development8.76E-03
94GO:0006635: fatty acid beta-oxidation8.82E-03
95GO:0001522: pseudouridine synthesis1.02E-02
96GO:0031540: regulation of anthocyanin biosynthetic process1.02E-02
97GO:0001558: regulation of cell growth1.17E-02
98GO:0030968: endoplasmic reticulum unfolded protein response1.17E-02
99GO:0043562: cellular response to nitrogen levels1.17E-02
100GO:0046686: response to cadmium ion1.28E-02
101GO:0009245: lipid A biosynthetic process1.33E-02
102GO:0048507: meristem development1.33E-02
103GO:0006189: 'de novo' IMP biosynthetic process1.33E-02
104GO:0048589: developmental growth1.33E-02
105GO:0009060: aerobic respiration1.33E-02
106GO:0015780: nucleotide-sugar transport1.33E-02
107GO:0042761: very long-chain fatty acid biosynthetic process1.50E-02
108GO:0010449: root meristem growth1.50E-02
109GO:0009651: response to salt stress1.57E-02
110GO:0010162: seed dormancy process1.68E-02
111GO:0016441: posttranscriptional gene silencing1.68E-02
112GO:0006913: nucleocytoplasmic transport1.86E-02
113GO:0015770: sucrose transport1.86E-02
114GO:0048229: gametophyte development1.86E-02
115GO:0010015: root morphogenesis1.86E-02
116GO:0015031: protein transport2.02E-02
117GO:0071365: cellular response to auxin stimulus2.05E-02
118GO:0006790: sulfur compound metabolic process2.05E-02
119GO:0012501: programmed cell death2.05E-02
120GO:0010102: lateral root morphogenesis2.24E-02
121GO:0010628: positive regulation of gene expression2.24E-02
122GO:2000028: regulation of photoperiodism, flowering2.24E-02
123GO:0009409: response to cold2.31E-02
124GO:0006446: regulation of translational initiation2.44E-02
125GO:0009644: response to high light intensity2.98E-02
126GO:0008380: RNA splicing3.03E-02
127GO:0009617: response to bacterium3.03E-02
128GO:0009944: polarity specification of adaxial/abaxial axis3.08E-02
129GO:0006406: mRNA export from nucleus3.08E-02
130GO:0006289: nucleotide-excision repair3.08E-02
131GO:0006487: protein N-linked glycosylation3.08E-02
132GO:0009116: nucleoside metabolic process3.08E-02
133GO:0009965: leaf morphogenesis3.09E-02
134GO:0051302: regulation of cell division3.31E-02
135GO:0003333: amino acid transmembrane transport3.54E-02
136GO:0015992: proton transport3.54E-02
137GO:0051260: protein homooligomerization3.54E-02
138GO:0010431: seed maturation3.54E-02
139GO:0061077: chaperone-mediated protein folding3.54E-02
140GO:0051603: proteolysis involved in cellular protein catabolic process3.83E-02
141GO:0071215: cellular response to abscisic acid stimulus4.02E-02
142GO:0009294: DNA mediated transformation4.02E-02
143GO:0040007: growth4.02E-02
144GO:0010584: pollen exine formation4.26E-02
145GO:0051028: mRNA transport4.51E-02
146GO:0000413: protein peptidyl-prolyl isomerization4.77E-02
RankGO TermAdjusted P value
1GO:0034513: box H/ACA snoRNA binding0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:1990259: histone-glutamine methyltransferase activity0.00E+00
4GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
5GO:0003735: structural constituent of ribosome9.25E-195
6GO:0003729: mRNA binding2.38E-36
7GO:0019843: rRNA binding2.60E-15
8GO:0003723: RNA binding1.02E-08
9GO:0015288: porin activity6.85E-07
10GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.81E-06
11GO:0003746: translation elongation factor activity7.77E-06
12GO:0030515: snoRNA binding2.47E-05
13GO:0008649: rRNA methyltransferase activity4.54E-05
14GO:0008308: voltage-gated anion channel activity5.09E-05
15GO:0008097: 5S rRNA binding9.62E-05
16GO:1990189: peptide-serine-N-acetyltransferase activity5.57E-04
17GO:0004828: serine-tRNA ligase activity5.57E-04
18GO:0004679: AMP-activated protein kinase activity5.57E-04
19GO:0047326: inositol tetrakisphosphate 5-kinase activity5.57E-04
20GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity5.57E-04
21GO:1990190: peptide-glutamate-N-acetyltransferase activity5.57E-04
22GO:0005080: protein kinase C binding5.57E-04
23GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity5.57E-04
24GO:0035614: snRNA stem-loop binding5.57E-04
25GO:0000824: inositol tetrakisphosphate 3-kinase activity5.57E-04
26GO:0008121: ubiquinol-cytochrome-c reductase activity6.04E-04
27GO:0043022: ribosome binding7.52E-04
28GO:0032934: sterol binding1.20E-03
29GO:0005078: MAP-kinase scaffold activity1.20E-03
30GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.20E-03
31GO:0030619: U1 snRNA binding1.20E-03
32GO:0050291: sphingosine N-acyltransferase activity1.20E-03
33GO:0015173: aromatic amino acid transmembrane transporter activity1.20E-03
34GO:0070034: telomerase RNA binding1.20E-03
35GO:0004750: ribulose-phosphate 3-epimerase activity1.20E-03
36GO:0001055: RNA polymerase II activity1.29E-03
37GO:0001054: RNA polymerase I activity1.74E-03
38GO:0044183: protein binding involved in protein folding1.74E-03
39GO:0005457: GDP-fucose transmembrane transporter activity1.97E-03
40GO:0015462: ATPase-coupled protein transmembrane transporter activity1.97E-03
41GO:0001056: RNA polymerase III activity2.00E-03
42GO:0015266: protein channel activity2.27E-03
43GO:0005460: UDP-glucose transmembrane transporter activity2.86E-03
44GO:0004550: nucleoside diphosphate kinase activity2.86E-03
45GO:0047627: adenylylsulfatase activity2.86E-03
46GO:0004749: ribose phosphate diphosphokinase activity2.86E-03
47GO:0070628: proteasome binding3.85E-03
48GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances3.85E-03
49GO:0004298: threonine-type endopeptidase activity4.33E-03
50GO:0005459: UDP-galactose transmembrane transporter activity4.94E-03
51GO:0045547: dehydrodolichyl diphosphate synthase activity4.94E-03
52GO:0005275: amine transmembrane transporter activity4.94E-03
53GO:0031593: polyubiquitin binding6.12E-03
54GO:0031177: phosphopantetheine binding6.12E-03
55GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity6.12E-03
56GO:0000035: acyl binding7.40E-03
57GO:0019887: protein kinase regulator activity7.40E-03
58GO:0051920: peroxiredoxin activity7.40E-03
59GO:0003743: translation initiation factor activity7.65E-03
60GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.72E-03
61GO:0005338: nucleotide-sugar transmembrane transporter activity8.76E-03
62GO:0008235: metalloexopeptidase activity8.76E-03
63GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.02E-02
64GO:0016209: antioxidant activity1.02E-02
65GO:0008233: peptidase activity1.58E-02
66GO:0008515: sucrose transmembrane transporter activity1.86E-02
67GO:0051119: sugar transmembrane transporter activity2.65E-02
68GO:0004407: histone deacetylase activity3.08E-02
69GO:0043130: ubiquitin binding3.08E-02
70GO:0005216: ion channel activity3.31E-02
71GO:0051087: chaperone binding3.31E-02
72GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.54E-02
73GO:0008514: organic anion transmembrane transporter activity4.26E-02
RankGO TermAdjusted P value
1GO:0072589: box H/ACA scaRNP complex0.00E+00
2GO:0005832: chaperonin-containing T-complex0.00E+00
3GO:0043186: P granule0.00E+00
4GO:0090661: box H/ACA telomerase RNP complex0.00E+00
5GO:0005840: ribosome5.07E-133
6GO:0022625: cytosolic large ribosomal subunit1.65E-128
7GO:0022626: cytosolic ribosome1.72E-111
8GO:0022627: cytosolic small ribosomal subunit1.18E-74
9GO:0005730: nucleolus2.97E-48
10GO:0005829: cytosol1.87E-41
11GO:0005737: cytoplasm2.93E-40
12GO:0009506: plasmodesma8.30E-24
13GO:0015934: large ribosomal subunit3.54E-23
14GO:0005774: vacuolar membrane4.63E-15
15GO:0016020: membrane1.96E-14
16GO:0015935: small ribosomal subunit2.66E-13
17GO:0005773: vacuole1.85E-10
18GO:0005618: cell wall8.74E-09
19GO:0005732: small nucleolar ribonucleoprotein complex8.42E-08
20GO:0005742: mitochondrial outer membrane translocase complex1.15E-06
21GO:0046930: pore complex1.15E-06
22GO:0015030: Cajal body2.73E-06
23GO:0005681: spliceosomal complex5.65E-06
24GO:0009507: chloroplast9.08E-06
25GO:0019013: viral nucleocapsid1.03E-05
26GO:0000502: proteasome complex3.68E-05
27GO:0005741: mitochondrial outer membrane4.06E-05
28GO:0005853: eukaryotic translation elongation factor 1 complex4.54E-05
29GO:0005665: DNA-directed RNA polymerase II, core complex1.75E-04
30GO:0005886: plasma membrane1.77E-04
31GO:0031428: box C/D snoRNP complex3.54E-04
32GO:0005758: mitochondrial intermembrane space3.93E-04
33GO:0030686: 90S preribosome5.57E-04
34GO:0005688: U6 snRNP7.52E-04
35GO:0046540: U4/U6 x U5 tri-snRNP complex9.15E-04
36GO:0005685: U1 snRNP1.09E-03
37GO:0005736: DNA-directed RNA polymerase I complex1.09E-03
38GO:0035145: exon-exon junction complex1.20E-03
39GO:0031415: NatA complex1.20E-03
40GO:0005666: DNA-directed RNA polymerase III complex1.29E-03
41GO:0071011: precatalytic spliceosome1.29E-03
42GO:0000418: DNA-directed RNA polymerase IV complex1.51E-03
43GO:0005852: eukaryotic translation initiation factor 3 complex1.74E-03
44GO:0008541: proteasome regulatory particle, lid subcomplex1.74E-03
45GO:0071013: catalytic step 2 spliceosome1.74E-03
46GO:0034719: SMN-Sm protein complex1.97E-03
47GO:0032040: small-subunit processome2.00E-03
48GO:0005743: mitochondrial inner membrane2.28E-03
49GO:0005750: mitochondrial respiratory chain complex III2.56E-03
50GO:1990726: Lsm1-7-Pat1 complex2.86E-03
51GO:0031429: box H/ACA snoRNP complex2.86E-03
52GO:0000419: DNA-directed RNA polymerase V complex3.21E-03
53GO:0005682: U5 snRNP3.85E-03
54GO:0016471: vacuolar proton-transporting V-type ATPase complex3.85E-03
55GO:0016593: Cdc73/Paf1 complex3.85E-03
56GO:0005839: proteasome core complex4.33E-03
57GO:0005687: U4 snRNP4.94E-03
58GO:0097526: spliceosomal tri-snRNP complex4.94E-03
59GO:0005744: mitochondrial inner membrane presequence translocase complex5.63E-03
60GO:0005689: U12-type spliceosomal complex7.40E-03
61GO:0016272: prefoldin complex7.40E-03
62GO:0031359: integral component of chloroplast outer membrane8.76E-03
63GO:0071004: U2-type prespliceosome1.02E-02
64GO:0005834: heterotrimeric G-protein complex1.04E-02
65GO:0030529: intracellular ribonucleoprotein complex1.28E-02
66GO:0005763: mitochondrial small ribosomal subunit1.33E-02
67GO:0005740: mitochondrial envelope1.68E-02
68GO:0005686: U2 snRNP1.68E-02
69GO:0048471: perinuclear region of cytoplasm1.86E-02
70GO:0000786: nucleosome2.04E-02
71GO:0031307: integral component of mitochondrial outer membrane2.05E-02
72GO:0005769: early endosome2.86E-02
73GO:0070469: respiratory chain3.31E-02
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Gene type



Gene DE type