Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0017038: protein import0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0016118: carotenoid catabolic process0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0006114: glycerol biosynthetic process0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0015979: photosynthesis1.19E-13
13GO:0010027: thylakoid membrane organization1.62E-09
14GO:0009773: photosynthetic electron transport in photosystem I6.69E-09
15GO:0009768: photosynthesis, light harvesting in photosystem I3.87E-06
16GO:0010196: nonphotochemical quenching4.27E-06
17GO:0018298: protein-chromophore linkage4.31E-06
18GO:0006000: fructose metabolic process1.27E-05
19GO:0010206: photosystem II repair1.30E-05
20GO:0043085: positive regulation of catalytic activity2.95E-05
21GO:0006096: glycolytic process4.53E-05
22GO:0006094: gluconeogenesis4.57E-05
23GO:0006021: inositol biosynthetic process5.13E-05
24GO:0010021: amylopectin biosynthetic process5.13E-05
25GO:0006109: regulation of carbohydrate metabolic process5.13E-05
26GO:0010207: photosystem II assembly5.55E-05
27GO:0019253: reductive pentose-phosphate cycle5.55E-05
28GO:0016123: xanthophyll biosynthetic process8.14E-05
29GO:0016117: carotenoid biosynthetic process2.04E-04
30GO:0006662: glycerol ether metabolic process2.51E-04
31GO:0009642: response to light intensity2.69E-04
32GO:0006438: valyl-tRNA aminoacylation2.77E-04
33GO:0043953: protein transport by the Tat complex2.77E-04
34GO:0000481: maturation of 5S rRNA2.77E-04
35GO:0042371: vitamin K biosynthetic process2.77E-04
36GO:0065002: intracellular protein transmembrane transport2.77E-04
37GO:0043686: co-translational protein modification2.77E-04
38GO:0080093: regulation of photorespiration2.77E-04
39GO:0043609: regulation of carbon utilization2.77E-04
40GO:0043007: maintenance of rDNA2.77E-04
41GO:0031998: regulation of fatty acid beta-oxidation2.77E-04
42GO:0034337: RNA folding2.77E-04
43GO:0009657: plastid organization3.32E-04
44GO:0032544: plastid translation3.32E-04
45GO:0006002: fructose 6-phosphate metabolic process3.32E-04
46GO:0006098: pentose-phosphate shunt3.99E-04
47GO:0042853: L-alanine catabolic process6.09E-04
48GO:0016124: xanthophyll catabolic process6.09E-04
49GO:0006432: phenylalanyl-tRNA aminoacylation6.09E-04
50GO:0018026: peptidyl-lysine monomethylation6.09E-04
51GO:0090342: regulation of cell aging6.09E-04
52GO:0097054: L-glutamate biosynthetic process6.09E-04
53GO:0006729: tetrahydrobiopterin biosynthetic process6.09E-04
54GO:0016121: carotene catabolic process6.09E-04
55GO:0030388: fructose 1,6-bisphosphate metabolic process6.09E-04
56GO:0019684: photosynthesis, light reaction6.38E-04
57GO:0016311: dephosphorylation7.10E-04
58GO:0006790: sulfur compound metabolic process7.29E-04
59GO:0006006: glucose metabolic process8.26E-04
60GO:0009735: response to cytokinin8.58E-04
61GO:0090391: granum assembly9.88E-04
62GO:0071492: cellular response to UV-A9.88E-04
63GO:0016050: vesicle organization9.88E-04
64GO:0005977: glycogen metabolic process9.88E-04
65GO:0009853: photorespiration1.02E-03
66GO:0046854: phosphatidylinositol phosphorylation1.04E-03
67GO:0034599: cellular response to oxidative stress1.07E-03
68GO:0010114: response to red light1.39E-03
69GO:0006537: glutamate biosynthetic process1.41E-03
70GO:0009052: pentose-phosphate shunt, non-oxidative branch1.41E-03
71GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.41E-03
72GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.41E-03
73GO:0006020: inositol metabolic process1.41E-03
74GO:0071484: cellular response to light intensity1.41E-03
75GO:0009644: response to high light intensity1.54E-03
76GO:0055114: oxidation-reduction process1.64E-03
77GO:0045727: positive regulation of translation1.89E-03
78GO:0015994: chlorophyll metabolic process1.89E-03
79GO:0051205: protein insertion into membrane1.89E-03
80GO:0010109: regulation of photosynthesis1.89E-03
81GO:0019676: ammonia assimilation cycle1.89E-03
82GO:0015976: carbon utilization1.89E-03
83GO:0006545: glycine biosynthetic process1.89E-03
84GO:0071486: cellular response to high light intensity1.89E-03
85GO:0009409: response to cold2.40E-03
86GO:0016120: carotene biosynthetic process2.41E-03
87GO:0010236: plastoquinone biosynthetic process2.41E-03
88GO:0045038: protein import into chloroplast thylakoid membrane2.41E-03
89GO:0031365: N-terminal protein amino acid modification2.41E-03
90GO:0006097: glyoxylate cycle2.41E-03
91GO:0006814: sodium ion transport2.70E-03
92GO:0019252: starch biosynthetic process2.89E-03
93GO:0042793: transcription from plastid promoter2.98E-03
94GO:0046855: inositol phosphate dephosphorylation2.98E-03
95GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.98E-03
96GO:0042549: photosystem II stabilization2.98E-03
97GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.98E-03
98GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.98E-03
99GO:0042372: phylloquinone biosynthetic process3.58E-03
100GO:0030488: tRNA methylation3.58E-03
101GO:0009645: response to low light intensity stimulus4.23E-03
102GO:0009772: photosynthetic electron transport in photosystem II4.23E-03
103GO:0071446: cellular response to salicylic acid stimulus4.23E-03
104GO:0045454: cell redox homeostasis4.33E-03
105GO:0005978: glycogen biosynthetic process4.90E-03
106GO:0030091: protein repair4.90E-03
107GO:0006605: protein targeting4.90E-03
108GO:0032508: DNA duplex unwinding4.90E-03
109GO:0016559: peroxisome fission4.90E-03
110GO:0048564: photosystem I assembly4.90E-03
111GO:0015995: chlorophyll biosynthetic process5.26E-03
112GO:2000031: regulation of salicylic acid mediated signaling pathway5.62E-03
113GO:0071482: cellular response to light stimulus5.62E-03
114GO:0010218: response to far red light6.43E-03
115GO:0005982: starch metabolic process7.15E-03
116GO:0009637: response to blue light7.40E-03
117GO:0009793: embryo development ending in seed dormancy7.66E-03
118GO:0009688: abscisic acid biosynthetic process7.97E-03
119GO:0048829: root cap development7.97E-03
120GO:0009698: phenylpropanoid metabolic process8.82E-03
121GO:0009089: lysine biosynthetic process via diaminopimelate8.82E-03
122GO:0009073: aromatic amino acid family biosynthetic process8.82E-03
123GO:0006415: translational termination8.82E-03
124GO:0000272: polysaccharide catabolic process8.82E-03
125GO:0018119: peptidyl-cysteine S-nitrosylation8.82E-03
126GO:0009744: response to sucrose9.55E-03
127GO:0045037: protein import into chloroplast stroma9.70E-03
128GO:0010628: positive regulation of gene expression1.06E-02
129GO:0006108: malate metabolic process1.06E-02
130GO:0009767: photosynthetic electron transport chain1.06E-02
131GO:0005986: sucrose biosynthetic process1.06E-02
132GO:0009658: chloroplast organization1.11E-02
133GO:0010020: chloroplast fission1.16E-02
134GO:0005985: sucrose metabolic process1.25E-02
135GO:0042742: defense response to bacterium1.33E-02
136GO:0009416: response to light stimulus1.42E-02
137GO:0043086: negative regulation of catalytic activity1.53E-02
138GO:0008299: isoprenoid biosynthetic process1.56E-02
139GO:0006418: tRNA aminoacylation for protein translation1.56E-02
140GO:0019915: lipid storage1.67E-02
141GO:0061077: chaperone-mediated protein folding1.67E-02
142GO:0006396: RNA processing1.90E-02
143GO:0009561: megagametogenesis2.01E-02
144GO:0042631: cellular response to water deprivation2.25E-02
145GO:0010182: sugar mediated signaling pathway2.37E-02
146GO:0009646: response to absence of light2.50E-02
147GO:0008654: phospholipid biosynthetic process2.63E-02
148GO:0005975: carbohydrate metabolic process2.69E-02
149GO:0071554: cell wall organization or biogenesis2.76E-02
150GO:0046686: response to cadmium ion2.81E-02
151GO:0006413: translational initiation2.97E-02
152GO:0010090: trichome morphogenesis3.02E-02
153GO:1901657: glycosyl compound metabolic process3.02E-02
154GO:0009567: double fertilization forming a zygote and endosperm3.16E-02
155GO:0007623: circadian rhythm3.18E-02
156GO:0051607: defense response to virus3.44E-02
157GO:0001666: response to hypoxia3.58E-02
158GO:0009627: systemic acquired resistance3.87E-02
159GO:0009813: flavonoid biosynthetic process4.48E-02
160GO:0009834: plant-type secondary cell wall biogenesis4.64E-02
161GO:0006499: N-terminal protein myristoylation4.64E-02
162GO:0007568: aging4.79E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
3GO:0090711: FMN hydrolase activity0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0016166: phytoene dehydrogenase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
13GO:0050281: serine-glyoxylate transaminase activity0.00E+00
14GO:0043136: glycerol-3-phosphatase activity0.00E+00
15GO:0000121: glycerol-1-phosphatase activity0.00E+00
16GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
17GO:0031409: pigment binding2.43E-06
18GO:0016168: chlorophyll binding2.47E-06
19GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity3.53E-06
20GO:0008047: enzyme activator activity2.30E-05
21GO:0008453: alanine-glyoxylate transaminase activity5.13E-05
22GO:0005528: FK506 binding9.27E-05
23GO:0004332: fructose-bisphosphate aldolase activity1.18E-04
24GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.62E-04
25GO:0047134: protein-disulfide reductase activity2.04E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.77E-04
27GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.77E-04
28GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.77E-04
29GO:0042586: peptide deformylase activity2.77E-04
30GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.77E-04
31GO:0004832: valine-tRNA ligase activity2.77E-04
32GO:0016041: glutamate synthase (ferredoxin) activity2.77E-04
33GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.77E-04
34GO:0004791: thioredoxin-disulfide reductase activity2.78E-04
35GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.97E-04
36GO:0003844: 1,4-alpha-glucan branching enzyme activity6.09E-04
37GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.09E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity6.09E-04
39GO:0052833: inositol monophosphate 4-phosphatase activity6.09E-04
40GO:0019156: isoamylase activity6.09E-04
41GO:0004826: phenylalanine-tRNA ligase activity6.09E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.09E-04
43GO:0004512: inositol-3-phosphate synthase activity6.09E-04
44GO:0008967: phosphoglycolate phosphatase activity6.09E-04
45GO:0010291: carotene beta-ring hydroxylase activity6.09E-04
46GO:0047746: chlorophyllase activity6.09E-04
47GO:0010297: heteropolysaccharide binding6.09E-04
48GO:0009977: proton motive force dependent protein transmembrane transporter activity6.09E-04
49GO:0052832: inositol monophosphate 3-phosphatase activity6.09E-04
50GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.09E-04
51GO:0016787: hydrolase activity7.61E-04
52GO:0046872: metal ion binding8.23E-04
53GO:0031072: heat shock protein binding8.26E-04
54GO:0008266: poly(U) RNA binding9.28E-04
55GO:0043169: cation binding9.88E-04
56GO:0005504: fatty acid binding9.88E-04
57GO:0003913: DNA photolyase activity9.88E-04
58GO:0004751: ribose-5-phosphate isomerase activity9.88E-04
59GO:0070402: NADPH binding9.88E-04
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.88E-04
61GO:0015462: ATPase-coupled protein transmembrane transporter activity9.88E-04
62GO:0004324: ferredoxin-NADP+ reductase activity9.88E-04
63GO:0004857: enzyme inhibitor activity1.27E-03
64GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.41E-03
65GO:0004792: thiosulfate sulfurtransferase activity1.41E-03
66GO:0016149: translation release factor activity, codon specific1.41E-03
67GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.41E-03
68GO:0008508: bile acid:sodium symporter activity1.41E-03
69GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.41E-03
70GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.69E-03
71GO:0045430: chalcone isomerase activity1.89E-03
72GO:0004659: prenyltransferase activity1.89E-03
73GO:0016279: protein-lysine N-methyltransferase activity1.89E-03
74GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.89E-03
75GO:0003959: NADPH dehydrogenase activity2.41E-03
76GO:0004040: amidase activity2.41E-03
77GO:0051538: 3 iron, 4 sulfur cluster binding2.41E-03
78GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.41E-03
79GO:0004556: alpha-amylase activity2.98E-03
80GO:0004462: lactoylglutathione lyase activity2.98E-03
81GO:0016615: malate dehydrogenase activity2.98E-03
82GO:2001070: starch binding2.98E-03
83GO:0015035: protein disulfide oxidoreductase activity3.31E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.58E-03
85GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.58E-03
86GO:0030060: L-malate dehydrogenase activity3.58E-03
87GO:0009881: photoreceptor activity4.23E-03
88GO:0019843: rRNA binding4.24E-03
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.39E-03
90GO:0004033: aldo-keto reductase (NADP) activity4.90E-03
91GO:0008173: RNA methyltransferase activity5.62E-03
92GO:0071949: FAD binding6.37E-03
93GO:0003747: translation release factor activity6.37E-03
94GO:0003993: acid phosphatase activity7.73E-03
95GO:0050661: NADP binding8.43E-03
96GO:0000049: tRNA binding9.70E-03
97GO:0004565: beta-galactosidase activity1.06E-02
98GO:0005315: inorganic phosphate transmembrane transporter activity1.06E-02
99GO:0004089: carbonate dehydratase activity1.06E-02
100GO:0005198: structural molecule activity1.07E-02
101GO:0051287: NAD binding1.16E-02
102GO:0051082: unfolded protein binding1.84E-02
103GO:0030570: pectate lyase activity1.89E-02
104GO:0022891: substrate-specific transmembrane transporter activity1.89E-02
105GO:0003756: protein disulfide isomerase activity2.01E-02
106GO:0008514: organic anion transmembrane transporter activity2.01E-02
107GO:0016491: oxidoreductase activity2.12E-02
108GO:0004812: aminoacyl-tRNA ligase activity2.13E-02
109GO:0050662: coenzyme binding2.50E-02
110GO:0016853: isomerase activity2.50E-02
111GO:0048038: quinone binding2.76E-02
112GO:0016413: O-acetyltransferase activity3.44E-02
113GO:0102483: scopolin beta-glucosidase activity4.02E-02
114GO:0004721: phosphoprotein phosphatase activity4.02E-02
115GO:0042802: identical protein binding4.04E-02
116GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.33E-02
117GO:0015238: drug transmembrane transporter activity4.48E-02
118GO:0030145: manganese ion binding4.79E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0043235: receptor complex0.00E+00
5GO:0009507: chloroplast2.14E-76
6GO:0009535: chloroplast thylakoid membrane4.22E-47
7GO:0009534: chloroplast thylakoid6.43E-45
8GO:0009570: chloroplast stroma8.13E-37
9GO:0009941: chloroplast envelope2.97E-32
10GO:0009579: thylakoid7.56E-25
11GO:0009543: chloroplast thylakoid lumen4.68E-17
12GO:0010287: plastoglobule1.51E-12
13GO:0031977: thylakoid lumen1.68E-11
14GO:0030095: chloroplast photosystem II2.20E-08
15GO:0048046: apoplast3.24E-08
16GO:0009522: photosystem I5.27E-07
17GO:0031969: chloroplast membrane1.61E-06
18GO:0000427: plastid-encoded plastid RNA polymerase complex3.53E-06
19GO:0009538: photosystem I reaction center6.48E-06
20GO:0010319: stromule3.68E-05
21GO:0009508: plastid chromosome4.57E-05
22GO:0009654: photosystem II oxygen evolving complex1.08E-04
23GO:0009782: photosystem I antenna complex2.77E-04
24GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.77E-04
25GO:0009783: photosystem II antenna complex2.77E-04
26GO:0009515: granal stacked thylakoid2.77E-04
27GO:0031361: integral component of thylakoid membrane2.77E-04
28GO:0009523: photosystem II3.05E-04
29GO:0019898: extrinsic component of membrane3.05E-04
30GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.99E-04
31GO:0009295: nucleoid4.66E-04
32GO:0016020: membrane5.65E-04
33GO:0030093: chloroplast photosystem I6.09E-04
34GO:0033281: TAT protein transport complex9.88E-04
35GO:0009509: chromoplast9.88E-04
36GO:0030076: light-harvesting complex1.04E-03
37GO:0042651: thylakoid membrane1.40E-03
38GO:0005623: cell4.39E-03
39GO:0005840: ribosome4.52E-03
40GO:0009501: amyloplast4.90E-03
41GO:0005777: peroxisome4.94E-03
42GO:0032040: small-subunit processome9.70E-03
43GO:0015935: small ribosomal subunit1.67E-02
44GO:0009706: chloroplast inner membrane1.84E-02
45GO:0005773: vacuole1.86E-02
46GO:0005759: mitochondrial matrix2.90E-02
47GO:0009707: chloroplast outer membrane4.33E-02
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Gene type



Gene DE type