Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042908: xenobiotic transport0.00E+00
2GO:0071244: cellular response to carbon dioxide0.00E+00
3GO:0018293: protein-FAD linkage0.00E+00
4GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
5GO:0046292: formaldehyde metabolic process0.00E+00
6GO:0010336: gibberellic acid homeostasis0.00E+00
7GO:0046294: formaldehyde catabolic process0.00E+00
8GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
9GO:0006721: terpenoid metabolic process0.00E+00
10GO:0006793: phosphorus metabolic process0.00E+00
11GO:0006069: ethanol oxidation0.00E+00
12GO:0055114: oxidation-reduction process2.54E-10
13GO:0051603: proteolysis involved in cellular protein catabolic process3.45E-08
14GO:0044550: secondary metabolite biosynthetic process9.07E-06
15GO:0050790: regulation of catalytic activity1.57E-04
16GO:0000305: response to oxygen radical2.27E-04
17GO:0016487: farnesol metabolic process2.27E-04
18GO:0010036: response to boron-containing substance2.27E-04
19GO:1903409: reactive oxygen species biosynthetic process2.27E-04
20GO:0006007: glucose catabolic process2.27E-04
21GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport2.27E-04
22GO:0006508: proteolysis2.91E-04
23GO:0009821: alkaloid biosynthetic process3.00E-04
24GO:0051592: response to calcium ion5.05E-04
25GO:0080183: response to photooxidative stress5.05E-04
26GO:0043100: pyrimidine nucleobase salvage5.05E-04
27GO:0019441: tryptophan catabolic process to kynurenine5.05E-04
28GO:0097054: L-glutamate biosynthetic process5.05E-04
29GO:0009058: biosynthetic process5.26E-04
30GO:0007568: aging6.34E-04
31GO:0006099: tricarboxylic acid cycle7.52E-04
32GO:0010351: lithium ion transport8.21E-04
33GO:0019419: sulfate reduction8.21E-04
34GO:1901562: response to paraquat8.21E-04
35GO:0071492: cellular response to UV-A8.21E-04
36GO:0044375: regulation of peroxisome size8.21E-04
37GO:0046713: borate transport1.17E-03
38GO:0006624: vacuolar protein processing1.17E-03
39GO:1902476: chloride transmembrane transport1.17E-03
40GO:0006537: glutamate biosynthetic process1.17E-03
41GO:0015700: arsenite transport1.17E-03
42GO:0006882: cellular zinc ion homeostasis1.17E-03
43GO:0006646: phosphatidylethanolamine biosynthetic process1.56E-03
44GO:0070534: protein K63-linked ubiquitination1.56E-03
45GO:0019676: ammonia assimilation cycle1.56E-03
46GO:0071486: cellular response to high light intensity1.56E-03
47GO:0009765: photosynthesis, light harvesting1.56E-03
48GO:0015846: polyamine transport1.56E-03
49GO:0006749: glutathione metabolic process1.56E-03
50GO:0032366: intracellular sterol transport1.56E-03
51GO:0009902: chloroplast relocation1.56E-03
52GO:0006096: glycolytic process1.75E-03
53GO:0042391: regulation of membrane potential1.76E-03
54GO:0080022: primary root development1.76E-03
55GO:0006520: cellular amino acid metabolic process1.89E-03
56GO:0009723: response to ethylene1.91E-03
57GO:0009229: thiamine diphosphate biosynthetic process1.99E-03
58GO:0010236: plastoquinone biosynthetic process1.99E-03
59GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.45E-03
60GO:0006301: postreplication repair2.45E-03
61GO:0006555: methionine metabolic process2.45E-03
62GO:0048317: seed morphogenesis2.45E-03
63GO:1902456: regulation of stomatal opening2.45E-03
64GO:0006796: phosphate-containing compound metabolic process2.45E-03
65GO:0009228: thiamine biosynthetic process2.45E-03
66GO:0009117: nucleotide metabolic process2.45E-03
67GO:0019509: L-methionine salvage from methylthioadenosine2.94E-03
68GO:1901001: negative regulation of response to salt stress2.94E-03
69GO:0080060: integument development2.94E-03
70GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.94E-03
71GO:0010189: vitamin E biosynthetic process2.94E-03
72GO:0045995: regulation of embryonic development3.47E-03
73GO:0006955: immune response3.47E-03
74GO:0006821: chloride transport3.47E-03
75GO:0030026: cellular manganese ion homeostasis3.47E-03
76GO:0048658: anther wall tapetum development4.02E-03
77GO:0016559: peroxisome fission4.02E-03
78GO:0030091: protein repair4.02E-03
79GO:0030162: regulation of proteolysis4.02E-03
80GO:0009753: response to jasmonic acid4.27E-03
81GO:0010150: leaf senescence4.43E-03
82GO:0015996: chlorophyll catabolic process4.60E-03
83GO:0046685: response to arsenic-containing substance5.22E-03
84GO:0080144: amino acid homeostasis5.22E-03
85GO:0051453: regulation of intracellular pH5.85E-03
86GO:0045036: protein targeting to chloroplast6.51E-03
87GO:0055062: phosphate ion homeostasis6.51E-03
88GO:0000103: sulfate assimilation6.51E-03
89GO:0006378: mRNA polyadenylation7.20E-03
90GO:0072593: reactive oxygen species metabolic process7.20E-03
91GO:0000272: polysaccharide catabolic process7.20E-03
92GO:0002213: defense response to insect7.92E-03
93GO:0006855: drug transmembrane transport8.34E-03
94GO:0050826: response to freezing8.66E-03
95GO:0006094: gluconeogenesis8.66E-03
96GO:0009691: cytokinin biosynthetic process8.66E-03
97GO:0006108: malate metabolic process8.66E-03
98GO:0006006: glucose metabolic process8.66E-03
99GO:0009611: response to wounding9.47E-03
100GO:0009225: nucleotide-sugar metabolic process1.02E-02
101GO:0007031: peroxisome organization1.02E-02
102GO:0042343: indole glucosinolate metabolic process1.02E-02
103GO:0019853: L-ascorbic acid biosynthetic process1.02E-02
104GO:0006071: glycerol metabolic process1.10E-02
105GO:0019344: cysteine biosynthetic process1.19E-02
106GO:0051017: actin filament bundle assembly1.19E-02
107GO:0009620: response to fungus1.26E-02
108GO:0008299: isoprenoid biosynthetic process1.27E-02
109GO:0006874: cellular calcium ion homeostasis1.27E-02
110GO:0045454: cell redox homeostasis1.28E-02
111GO:0098542: defense response to other organism1.36E-02
112GO:0019915: lipid storage1.36E-02
113GO:0019748: secondary metabolic process1.45E-02
114GO:0006012: galactose metabolic process1.54E-02
115GO:0009693: ethylene biosynthetic process1.54E-02
116GO:0009751: response to salicylic acid1.63E-02
117GO:0005975: carbohydrate metabolic process1.65E-02
118GO:0010118: stomatal movement1.83E-02
119GO:0010268: brassinosteroid homeostasis1.93E-02
120GO:0006814: sodium ion transport2.03E-02
121GO:0008654: phospholipid biosynthetic process2.14E-02
122GO:0016132: brassinosteroid biosynthetic process2.24E-02
123GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.24E-02
124GO:0007623: circadian rhythm2.38E-02
125GO:1901657: glycosyl compound metabolic process2.46E-02
126GO:0016125: sterol metabolic process2.57E-02
127GO:0006464: cellular protein modification process2.57E-02
128GO:0010286: heat acclimation2.68E-02
129GO:0009615: response to virus2.91E-02
130GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.03E-02
131GO:0042128: nitrate assimilation3.15E-02
132GO:0010411: xyloglucan metabolic process3.27E-02
133GO:0009555: pollen development3.41E-02
134GO:0008219: cell death3.52E-02
135GO:0009817: defense response to fungus, incompatible interaction3.52E-02
136GO:0009407: toxin catabolic process3.77E-02
137GO:0010043: response to zinc ion3.90E-02
138GO:0006865: amino acid transport4.03E-02
139GO:0034599: cellular response to oxidative stress4.30E-02
140GO:0080167: response to karrikin4.56E-02
141GO:0042542: response to hydrogen peroxide4.85E-02
RankGO TermAdjusted P value
1GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity0.00E+00
2GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
3GO:0050342: tocopherol O-methyltransferase activity0.00E+00
4GO:0047918: GDP-mannose 3,5-epimerase activity0.00E+00
5GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
6GO:0015205: nucleobase transmembrane transporter activity0.00E+00
7GO:0015930: glutamate synthase activity0.00E+00
8GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
9GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
10GO:0018738: S-formylglutathione hydrolase activity0.00E+00
11GO:0015391: nucleobase:cation symporter activity0.00E+00
12GO:0050334: thiaminase activity0.00E+00
13GO:0047886: farnesol dehydrogenase activity0.00E+00
14GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
15GO:0004197: cysteine-type endopeptidase activity9.54E-09
16GO:0008234: cysteine-type peptidase activity1.09E-06
17GO:0020037: heme binding4.81E-06
18GO:0004557: alpha-galactosidase activity8.79E-06
19GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.57E-05
20GO:0008106: alcohol dehydrogenase (NADP+) activity2.00E-05
21GO:0005506: iron ion binding2.93E-05
22GO:0019825: oxygen binding5.73E-05
23GO:0016491: oxidoreductase activity7.92E-05
24GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity8.60E-05
25GO:0005261: cation channel activity1.19E-04
26GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity2.27E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.27E-04
28GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity2.27E-04
29GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.27E-04
30GO:0046480: galactolipid galactosyltransferase activity2.27E-04
31GO:0004347: glucose-6-phosphate isomerase activity2.27E-04
32GO:0080079: cellobiose glucosidase activity2.27E-04
33GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity2.27E-04
34GO:0001530: lipopolysaccharide binding2.27E-04
35GO:0016780: phosphotransferase activity, for other substituted phosphate groups2.27E-04
36GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.27E-04
37GO:0009671: nitrate:proton symporter activity2.27E-04
38GO:0080139: borate efflux transmembrane transporter activity2.27E-04
39GO:0016783: sulfurtransferase activity2.27E-04
40GO:0071992: phytochelatin transmembrane transporter activity2.27E-04
41GO:0004307: ethanolaminephosphotransferase activity2.27E-04
42GO:0016041: glutamate synthase (ferredoxin) activity2.27E-04
43GO:0016844: strictosidine synthase activity3.56E-04
44GO:0004362: glutathione-disulfide reductase activity5.05E-04
45GO:0015179: L-amino acid transmembrane transporter activity5.05E-04
46GO:0033741: adenylyl-sulfate reductase (glutathione) activity5.05E-04
47GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity5.05E-04
48GO:0050347: trans-octaprenyltranstransferase activity5.05E-04
49GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity5.05E-04
50GO:0009973: adenylyl-sulfate reductase activity5.05E-04
51GO:0030572: phosphatidyltransferase activity5.05E-04
52GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity5.05E-04
53GO:0004046: aminoacylase activity5.05E-04
54GO:0004142: diacylglycerol cholinephosphotransferase activity5.05E-04
55GO:0004061: arylformamidase activity5.05E-04
56GO:0004022: alcohol dehydrogenase (NAD) activity6.27E-04
57GO:0030552: cAMP binding7.89E-04
58GO:0030553: cGMP binding7.89E-04
59GO:0052692: raffinose alpha-galactosidase activity8.21E-04
60GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.21E-04
61GO:0010277: chlorophyllide a oxygenase [overall] activity8.21E-04
62GO:0004185: serine-type carboxypeptidase activity9.77E-04
63GO:0005216: ion channel activity1.06E-03
64GO:0016787: hydrolase activity1.12E-03
65GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.17E-03
66GO:0035529: NADH pyrophosphatase activity1.17E-03
67GO:0015203: polyamine transmembrane transporter activity1.17E-03
68GO:0004792: thiosulfate sulfurtransferase activity1.17E-03
69GO:0046715: borate transmembrane transporter activity1.17E-03
70GO:0015368: calcium:cation antiporter activity1.56E-03
71GO:0015369: calcium:proton antiporter activity1.56E-03
72GO:0005253: anion channel activity1.56E-03
73GO:0004301: epoxide hydrolase activity1.56E-03
74GO:0016788: hydrolase activity, acting on ester bonds1.57E-03
75GO:0005249: voltage-gated potassium channel activity1.76E-03
76GO:0030551: cyclic nucleotide binding1.76E-03
77GO:0015301: anion:anion antiporter activity1.99E-03
78GO:0005452: inorganic anion exchanger activity1.99E-03
79GO:0008177: succinate dehydrogenase (ubiquinone) activity1.99E-03
80GO:0051538: 3 iron, 4 sulfur cluster binding1.99E-03
81GO:0005247: voltage-gated chloride channel activity2.45E-03
82GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity2.45E-03
83GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.45E-03
84GO:0016615: malate dehydrogenase activity2.45E-03
85GO:0016161: beta-amylase activity2.94E-03
86GO:0030060: L-malate dehydrogenase activity2.94E-03
87GO:0004427: inorganic diphosphatase activity3.47E-03
88GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity4.02E-03
89GO:0004034: aldose 1-epimerase activity4.02E-03
90GO:0004869: cysteine-type endopeptidase inhibitor activity4.02E-03
91GO:0015491: cation:cation antiporter activity4.02E-03
92GO:0008236: serine-type peptidase activity4.16E-03
93GO:0008889: glycerophosphodiester phosphodiesterase activity5.22E-03
94GO:0015174: basic amino acid transmembrane transporter activity5.85E-03
95GO:0050661: NADP binding6.32E-03
96GO:0008559: xenobiotic-transporting ATPase activity7.20E-03
97GO:0008378: galactosyltransferase activity7.92E-03
98GO:0051287: NAD binding8.66E-03
99GO:0004175: endopeptidase activity9.42E-03
100GO:0003712: transcription cofactor activity1.02E-02
101GO:0031625: ubiquitin protein ligase binding1.07E-02
102GO:0045735: nutrient reservoir activity1.14E-02
103GO:0008324: cation transmembrane transporter activity1.27E-02
104GO:0005507: copper ion binding1.56E-02
105GO:0005516: calmodulin binding1.70E-02
106GO:0004402: histone acetyltransferase activity1.83E-02
107GO:0030170: pyridoxal phosphate binding1.92E-02
108GO:0016853: isomerase activity2.03E-02
109GO:0050662: coenzyme binding2.03E-02
110GO:0008137: NADH dehydrogenase (ubiquinone) activity2.24E-02
111GO:0015297: antiporter activity2.28E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.46E-02
113GO:0008483: transaminase activity2.68E-02
114GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.68E-02
115GO:0016413: O-acetyltransferase activity2.80E-02
116GO:0003824: catalytic activity3.02E-02
117GO:0042802: identical protein binding3.03E-02
118GO:0016168: chlorophyll binding3.03E-02
119GO:0030247: polysaccharide binding3.27E-02
120GO:0015238: drug transmembrane transporter activity3.65E-02
121GO:0030145: manganese ion binding3.90E-02
122GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.17E-02
123GO:0008422: beta-glucosidase activity4.43E-02
124GO:0004364: glutathione transferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0005773: vacuole2.50E-14
3GO:0005764: lysosome9.98E-11
4GO:0005615: extracellular space1.59E-05
5GO:0005746: mitochondrial respiratory chain5.85E-05
6GO:0043674: columella2.27E-04
7GO:0016020: membrane5.53E-04
8GO:0005750: mitochondrial respiratory chain complex III7.06E-04
9GO:0016328: lateral plasma membrane8.21E-04
10GO:0009536: plastid1.02E-03
11GO:0005783: endoplasmic reticulum1.14E-03
12GO:0005849: mRNA cleavage factor complex1.17E-03
13GO:0000323: lytic vacuole1.17E-03
14GO:0031372: UBC13-MMS2 complex1.56E-03
15GO:0009526: plastid envelope1.56E-03
16GO:0005747: mitochondrial respiratory chain complex I1.82E-03
17GO:0034707: chloride channel complex2.45E-03
18GO:0031463: Cul3-RING ubiquitin ligase complex2.45E-03
19GO:0005576: extracellular region2.77E-03
20GO:0005829: cytosol3.39E-03
21GO:0031359: integral component of chloroplast outer membrane3.47E-03
22GO:0005774: vacuolar membrane3.51E-03
23GO:0009505: plant-type cell wall3.62E-03
24GO:0048046: apoplast3.94E-03
25GO:0009501: amyloplast4.02E-03
26GO:0045273: respiratory chain complex II4.02E-03
27GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.02E-03
28GO:0005779: integral component of peroxisomal membrane4.60E-03
29GO:0010494: cytoplasmic stress granule5.22E-03
30GO:0005887: integral component of plasma membrane6.10E-03
31GO:0005884: actin filament7.20E-03
32GO:0005777: peroxisome1.13E-02
33GO:0005758: mitochondrial intermembrane space1.19E-02
34GO:0009523: photosystem II2.14E-02
35GO:0005759: mitochondrial matrix2.17E-02
36GO:0009507: chloroplast2.24E-02
37GO:0009705: plant-type vacuole membrane2.38E-02
38GO:0010319: stromule2.68E-02
39GO:0005778: peroxisomal membrane2.68E-02
40GO:0000932: P-body2.91E-02
41GO:0016021: integral component of membrane3.49E-02
42GO:0019005: SCF ubiquitin ligase complex3.52E-02
43GO:0009707: chloroplast outer membrane3.52E-02
44GO:0000325: plant-type vacuole3.90E-02
45GO:0031969: chloroplast membrane4.56E-02
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Gene type



Gene DE type