co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G46420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0006021: inositol biosynthetic process	4.77E-06
8	GO:0046855: inositol phosphate dephosphorylation	1.23E-05
9	GO:0048564: photosystem I assembly	3.18E-05
10	GO:0000476: maturation of 4.5S rRNA	6.91E-05
11	GO:0000967: rRNA 5'-end processing	6.91E-05
12	GO:1904966: positive regulation of vitamin E biosynthetic process	6.91E-05
13	GO:0000481: maturation of 5S rRNA	6.91E-05
14	GO:1904964: positive regulation of phytol biosynthetic process	6.91E-05
15	GO:0042371: vitamin K biosynthetic process	6.91E-05
16	GO:0034337: RNA folding	6.91E-05
17	GO:0006419: alanyl-tRNA aminoacylation	6.91E-05
18	GO:0009793: embryo development ending in seed dormancy	8.63E-05
19	GO:0006790: sulfur compound metabolic process	1.03E-04
20	GO:0009658: chloroplast organization	1.13E-04
21	GO:0010020: chloroplast fission	1.36E-04
22	GO:0019853: L-ascorbic acid biosynthetic process	1.54E-04
23	GO:0046854: phosphatidylinositol phosphorylation	1.54E-04
24	GO:0006432: phenylalanyl-tRNA aminoacylation	1.66E-04
25	GO:0018026: peptidyl-lysine monomethylation	1.66E-04
26	GO:0034470: ncRNA processing	1.66E-04
27	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.66E-04
28	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.66E-04
29	GO:0005977: glycogen metabolic process	2.81E-04
30	GO:0009052: pentose-phosphate shunt, non-oxidative branch	4.06E-04
31	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	4.06E-04
32	GO:2001141: regulation of RNA biosynthetic process	4.06E-04
33	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.06E-04
34	GO:0006020: inositol metabolic process	4.06E-04
35	GO:0010021: amylopectin biosynthetic process	5.42E-04
36	GO:0016558: protein import into peroxisome matrix	6.87E-04
37	GO:0006564: L-serine biosynthetic process	6.87E-04
38	GO:0010236: plastoquinone biosynthetic process	6.87E-04
39	GO:0010027: thylakoid membrane organization	6.92E-04
40	GO:0006655: phosphatidylglycerol biosynthetic process	8.40E-04
41	GO:0042793: transcription from plastid promoter	8.40E-04
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.40E-04
43	GO:0016311: dephosphorylation	8.51E-04
44	GO:0042372: phylloquinone biosynthetic process	9.99E-04
45	GO:1901259: chloroplast rRNA processing	9.99E-04
46	GO:0006400: tRNA modification	1.17E-03
47	GO:0009772: photosynthetic electron transport in photosystem II	1.17E-03
48	GO:0032508: DNA duplex unwinding	1.34E-03
49	GO:0000105: histidine biosynthetic process	1.34E-03
50	GO:0016559: peroxisome fission	1.34E-03
51	GO:0032544: plastid translation	1.53E-03
52	GO:0017004: cytochrome complex assembly	1.53E-03
53	GO:0071482: cellular response to light stimulus	1.53E-03
54	GO:0009657: plastid organization	1.53E-03
55	GO:0005982: starch metabolic process	1.93E-03
56	GO:0019684: photosynthesis, light reaction	2.36E-03
57	GO:0009089: lysine biosynthetic process via diaminopimelate	2.36E-03
58	GO:0006352: DNA-templated transcription, initiation	2.36E-03
59	GO:0006415: translational termination	2.36E-03
60	GO:0005983: starch catabolic process	2.58E-03
61	GO:0016024: CDP-diacylglycerol biosynthetic process	2.58E-03
62	GO:0006094: gluconeogenesis	2.82E-03
63	GO:0010207: photosystem II assembly	3.06E-03
64	GO:0000162: tryptophan biosynthetic process	3.56E-03
65	GO:0009790: embryo development	3.91E-03
66	GO:0008299: isoprenoid biosynthetic process	4.08E-03
67	GO:0006413: translational initiation	4.31E-03
68	GO:0071369: cellular response to ethylene stimulus	4.91E-03
69	GO:0006012: galactose metabolic process	4.91E-03
70	GO:0000413: protein peptidyl-prolyl isomerization	5.80E-03
71	GO:0006457: protein folding	5.94E-03
72	GO:0048868: pollen tube development	6.11E-03
73	GO:0019252: starch biosynthetic process	6.74E-03
74	GO:0006635: fatty acid beta-oxidation	7.07E-03
75	GO:0009911: positive regulation of flower development	9.13E-03
76	GO:0015979: photosynthesis	1.01E-02
77	GO:0018298: protein-chromophore linkage	1.10E-02
78	GO:0009817: defense response to fungus, incompatible interaction	1.10E-02
79	GO:0007568: aging	1.22E-02
80	GO:0009637: response to blue light	1.30E-02
81	GO:0010114: response to red light	1.56E-02
82	GO:0006364: rRNA processing	1.92E-02
83	GO:0006096: glycolytic process	2.17E-02
84	GO:0009416: response to light stimulus	2.33E-02
85	GO:0009553: embryo sac development	2.42E-02
86	GO:0006396: RNA processing	2.52E-02
87	GO:0055085: transmembrane transport	2.96E-02
88	GO:0007623: circadian rhythm	3.65E-02
89	GO:0009451: RNA modification	3.71E-02
90	GO:0006470: protein dephosphorylation	4.01E-02
91	GO:0008380: RNA splicing	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0042623: ATPase activity, coupled	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0052832: inositol monophosphate 3-phosphatase activity	2.70E-07
9	GO:0008934: inositol monophosphate 1-phosphatase activity	2.70E-07
10	GO:0052833: inositol monophosphate 4-phosphatase activity	2.70E-07
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.12E-06
12	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.76E-05
13	GO:0019203: carbohydrate phosphatase activity	6.91E-05
14	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.91E-05
15	GO:0004347: glucose-6-phosphate isomerase activity	6.91E-05
16	GO:0050308: sugar-phosphatase activity	6.91E-05
17	GO:0004813: alanine-tRNA ligase activity	6.91E-05
18	GO:0000049: tRNA binding	1.03E-04
19	GO:0019156: isoamylase activity	1.66E-04
20	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.66E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	1.66E-04
22	GO:0004826: phenylalanine-tRNA ligase activity	1.66E-04
23	GO:0005528: FK506 binding	1.94E-04
24	GO:0004751: ribose-5-phosphate isomerase activity	2.81E-04
25	GO:0070402: NADPH binding	2.81E-04
26	GO:0003924: GTPase activity	3.14E-04
27	GO:0016149: translation release factor activity, codon specific	4.06E-04
28	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	5.42E-04
29	GO:0004659: prenyltransferase activity	5.42E-04
30	GO:0016279: protein-lysine N-methyltransferase activity	5.42E-04
31	GO:0001053: plastid sigma factor activity	5.42E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.42E-04
33	GO:0004045: aminoacyl-tRNA hydrolase activity	5.42E-04
34	GO:0016987: sigma factor activity	5.42E-04
35	GO:0043495: protein anchor	5.42E-04
36	GO:0016597: amino acid binding	6.55E-04
37	GO:0042802: identical protein binding	7.68E-04
38	GO:0004556: alpha-amylase activity	8.40E-04
39	GO:2001070: starch binding	8.40E-04
40	GO:0042578: phosphoric ester hydrolase activity	8.40E-04
41	GO:0008195: phosphatidate phosphatase activity	9.99E-04
42	GO:0003993: acid phosphatase activity	1.16E-03
43	GO:0019899: enzyme binding	1.17E-03
44	GO:0004033: aldo-keto reductase (NADP) activity	1.34E-03
45	GO:0005525: GTP binding	1.60E-03
46	GO:0003747: translation release factor activity	1.73E-03
47	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.73E-03
48	GO:0031072: heat shock protein binding	2.82E-03
49	GO:0003887: DNA-directed DNA polymerase activity	3.56E-03
50	GO:0043424: protein histidine kinase binding	4.08E-03
51	GO:0008017: microtubule binding	4.83E-03
52	GO:0022891: substrate-specific transmembrane transporter activity	4.91E-03
53	GO:0003743: translation initiation factor activity	5.39E-03
54	GO:0016853: isomerase activity	6.42E-03
55	GO:0048038: quinone binding	7.07E-03
56	GO:0003684: damaged DNA binding	8.08E-03
57	GO:0016168: chlorophyll binding	9.50E-03
58	GO:0030145: manganese ion binding	1.22E-02
59	GO:0003746: translation elongation factor activity	1.30E-02
60	GO:0003723: RNA binding	1.59E-02
61	GO:0005198: structural molecule activity	1.69E-02
62	GO:0003729: mRNA binding	1.74E-02
63	GO:0051287: NAD binding	1.78E-02
64	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.92E-02
65	GO:0051082: unfolded protein binding	2.47E-02
66	GO:0016746: transferase activity, transferring acyl groups	2.52E-02
67	GO:0008026: ATP-dependent helicase activity	2.58E-02
68	GO:0019843: rRNA binding	2.90E-02
69	GO:0046872: metal ion binding	4.00E-02
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.32E-02
71	GO:0008168: methyltransferase activity	4.84E-02
72	GO:0000287: magnesium ion binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.46E-32
3	GO:0009570: chloroplast stroma	5.73E-13
4	GO:0009535: chloroplast thylakoid membrane	4.01E-10
5	GO:0009543: chloroplast thylakoid lumen	1.06E-06
6	GO:0042646: plastid nucleoid	2.48E-06
7	GO:0031977: thylakoid lumen	1.01E-04
8	GO:0009941: chloroplast envelope	1.12E-04
9	GO:0009534: chloroplast thylakoid	1.65E-04
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.66E-04
11	GO:0042651: thylakoid membrane	2.16E-04
12	GO:0009579: thylakoid	9.92E-04
13	GO:0016363: nuclear matrix	9.99E-04
14	GO:0009533: chloroplast stromal thylakoid	1.17E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.73E-03
16	GO:0042644: chloroplast nucleoid	1.73E-03
17	GO:0055028: cortical microtubule	2.14E-03
18	GO:0032040: small-subunit processome	2.58E-03
19	GO:0009508: plastid chromosome	2.82E-03
20	GO:0030095: chloroplast photosystem II	3.06E-03
21	GO:0009654: photosystem II oxygen evolving complex	4.08E-03
22	GO:0005759: mitochondrial matrix	4.21E-03
23	GO:0009532: plastid stroma	4.35E-03
24	GO:0009523: photosystem II	6.74E-03
25	GO:0019898: extrinsic component of membrane	6.74E-03
26	GO:0005778: peroxisomal membrane	8.42E-03
27	GO:0009295: nucleoid	8.42E-03
28	GO:0005874: microtubule	8.55E-03
29	GO:0031969: chloroplast membrane	8.84E-03
30	GO:0030529: intracellular ribonucleoprotein complex	9.13E-03
31	GO:0009707: chloroplast outer membrane	1.10E-02
32	GO:0009536: plastid	1.36E-02
33	GO:0009706: chloroplast inner membrane	2.47E-02