co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G46390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0008298: intracellular mRNA localization	0.00E+00
8	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
9	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
10	GO:0080005: photosystem stoichiometry adjustment	7.51E-07
11	GO:0018298: protein-chromophore linkage	7.69E-06
12	GO:0015979: photosynthesis	8.92E-06
13	GO:0006021: inositol biosynthetic process	1.25E-05
14	GO:0046855: inositol phosphate dephosphorylation	3.11E-05
15	GO:0048564: photosystem I assembly	7.70E-05
16	GO:0009657: plastid organization	9.69E-05
17	GO:0010362: negative regulation of anion channel activity by blue light	1.22E-04
18	GO:0071277: cellular response to calcium ion	1.22E-04
19	GO:0009443: pyridoxal 5'-phosphate salvage	1.22E-04
20	GO:0031426: polycistronic mRNA processing	1.22E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	1.22E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	1.22E-04
23	GO:0006436: tryptophanyl-tRNA aminoacylation	1.22E-04
24	GO:0006790: sulfur compound metabolic process	2.32E-04
25	GO:0009767: photosynthetic electron transport chain	2.65E-04
26	GO:0046741: transport of virus in host, tissue to tissue	2.82E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.82E-04
28	GO:0042548: regulation of photosynthesis, light reaction	2.82E-04
29	GO:0006435: threonyl-tRNA aminoacylation	2.82E-04
30	GO:0030187: melatonin biosynthetic process	2.82E-04
31	GO:0000256: allantoin catabolic process	2.82E-04
32	GO:0006568: tryptophan metabolic process	2.82E-04
33	GO:0010207: photosystem II assembly	3.00E-04
34	GO:0046854: phosphatidylinositol phosphorylation	3.37E-04
35	GO:0009405: pathogenesis	4.65E-04
36	GO:0006013: mannose metabolic process	4.65E-04
37	GO:0002230: positive regulation of defense response to virus by host	4.65E-04
38	GO:1901672: positive regulation of systemic acquired resistance	4.65E-04
39	GO:0010136: ureide catabolic process	4.65E-04
40	GO:0010239: chloroplast mRNA processing	6.66E-04
41	GO:0006145: purine nucleobase catabolic process	6.66E-04
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.66E-04
43	GO:0046739: transport of virus in multicellular host	6.66E-04
44	GO:0043572: plastid fission	6.66E-04
45	GO:0046836: glycolipid transport	6.66E-04
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.66E-04
47	GO:0006020: inositol metabolic process	6.66E-04
48	GO:0031935: regulation of chromatin silencing	8.84E-04
49	GO:0009765: photosynthesis, light harvesting	8.84E-04
50	GO:0009902: chloroplast relocation	8.84E-04
51	GO:0009791: post-embryonic development	9.36E-04
52	GO:0016123: xanthophyll biosynthetic process	1.12E-03
53	GO:0034052: positive regulation of plant-type hypersensitive response	1.12E-03
54	GO:0016120: carotene biosynthetic process	1.12E-03
55	GO:0016558: protein import into peroxisome matrix	1.12E-03
56	GO:0006282: regulation of DNA repair	1.12E-03
57	GO:0006413: translational initiation	1.34E-03
58	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.37E-03
59	GO:0010190: cytochrome b6f complex assembly	1.37E-03
60	GO:0009643: photosynthetic acclimation	1.37E-03
61	GO:0042549: photosystem II stabilization	1.37E-03
62	GO:0007623: circadian rhythm	1.46E-03
63	GO:0009816: defense response to bacterium, incompatible interaction	1.50E-03
64	GO:0010189: vitamin E biosynthetic process	1.64E-03
65	GO:0015995: chlorophyll biosynthetic process	1.67E-03
66	GO:0048528: post-embryonic root development	1.92E-03
67	GO:0009645: response to low light intensity stimulus	1.92E-03
68	GO:0009793: embryo development ending in seed dormancy	2.10E-03
69	GO:0007568: aging	2.13E-03
70	GO:0009642: response to light intensity	2.22E-03
71	GO:0009704: de-etiolation	2.22E-03
72	GO:0055114: oxidation-reduction process	2.55E-03
73	GO:0048507: meristem development	2.87E-03
74	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.87E-03
75	GO:0090333: regulation of stomatal closure	2.87E-03
76	GO:0009638: phototropism	3.21E-03
77	GO:1900426: positive regulation of defense response to bacterium	3.21E-03
78	GO:0009644: response to high light intensity	3.23E-03
79	GO:0006259: DNA metabolic process	3.57E-03
80	GO:0045036: protein targeting to chloroplast	3.57E-03
81	GO:0006415: translational termination	3.94E-03
82	GO:0006265: DNA topological change	3.94E-03
83	GO:0006006: glucose metabolic process	4.71E-03
84	GO:0010020: chloroplast fission	5.12E-03
85	GO:0019253: reductive pentose-phosphate cycle	5.12E-03
86	GO:0019853: L-ascorbic acid biosynthetic process	5.54E-03
87	GO:0090351: seedling development	5.54E-03
88	GO:0006396: RNA processing	5.87E-03
89	GO:0009863: salicylic acid mediated signaling pathway	6.42E-03
90	GO:0051302: regulation of cell division	6.87E-03
91	GO:0008299: isoprenoid biosynthetic process	6.87E-03
92	GO:0006418: tRNA aminoacylation for protein translation	6.87E-03
93	GO:0009768: photosynthesis, light harvesting in photosystem I	6.87E-03
94	GO:0006825: copper ion transport	6.87E-03
95	GO:0006012: galactose metabolic process	8.30E-03
96	GO:0016117: carotenoid biosynthetic process	9.31E-03
97	GO:0010118: stomatal movement	9.83E-03
98	GO:0007059: chromosome segregation	1.09E-02
99	GO:0008654: phospholipid biosynthetic process	1.15E-02
100	GO:0010468: regulation of gene expression	1.18E-02
101	GO:0000302: response to reactive oxygen species	1.20E-02
102	GO:0006635: fatty acid beta-oxidation	1.20E-02
103	GO:0031047: gene silencing by RNA	1.26E-02
104	GO:0016032: viral process	1.26E-02
105	GO:0046686: response to cadmium ion	1.37E-02
106	GO:0051607: defense response to virus	1.50E-02
107	GO:0055085: transmembrane transport	1.53E-02
108	GO:0009658: chloroplast organization	1.53E-02
109	GO:0010027: thylakoid membrane organization	1.56E-02
110	GO:0042128: nitrate assimilation	1.69E-02
111	GO:0016311: dephosphorylation	1.82E-02
112	GO:0009817: defense response to fungus, incompatible interaction	1.88E-02
113	GO:0048481: plant ovule development	1.88E-02
114	GO:0080167: response to karrikin	1.90E-02
115	GO:0000160: phosphorelay signal transduction system	1.95E-02
116	GO:0046777: protein autophosphorylation	2.03E-02
117	GO:0009853: photorespiration	2.23E-02
118	GO:0009637: response to blue light	2.23E-02
119	GO:0010114: response to red light	2.67E-02
120	GO:0006364: rRNA processing	3.30E-02
121	GO:0006417: regulation of translation	3.55E-02
122	GO:0006096: glycolytic process	3.72E-02
123	GO:0009626: plant-type hypersensitive response	3.89E-02
124	GO:0016569: covalent chromatin modification	4.06E-02
125	GO:0009735: response to cytokinin	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
7	GO:0042623: ATPase activity, coupled	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0010276: phytol kinase activity	0.00E+00
10	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
11	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
12	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
13	GO:0052832: inositol monophosphate 3-phosphatase activity	7.51E-07
14	GO:0008934: inositol monophosphate 1-phosphatase activity	7.51E-07
15	GO:0052833: inositol monophosphate 4-phosphatase activity	7.51E-07
16	GO:0070402: NADPH binding	2.83E-06
17	GO:0051861: glycolipid binding	1.25E-05
18	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.39E-05
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.22E-04
20	GO:0004008: copper-exporting ATPase activity	1.22E-04
21	GO:0016168: chlorophyll binding	1.22E-04
22	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.22E-04
23	GO:0004830: tryptophan-tRNA ligase activity	1.22E-04
24	GO:0030941: chloroplast targeting sequence binding	1.22E-04
25	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.22E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.22E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.82E-04
28	GO:0004829: threonine-tRNA ligase activity	2.82E-04
29	GO:0019200: carbohydrate kinase activity	2.82E-04
30	GO:0004148: dihydrolipoyl dehydrogenase activity	4.65E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	4.65E-04
32	GO:0030267: glyoxylate reductase (NADP) activity	4.65E-04
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.65E-04
34	GO:0022891: substrate-specific transmembrane transporter activity	6.02E-04
35	GO:0017089: glycolipid transporter activity	6.66E-04
36	GO:0048027: mRNA 5'-UTR binding	6.66E-04
37	GO:0016851: magnesium chelatase activity	6.66E-04
38	GO:0004792: thiosulfate sulfurtransferase activity	6.66E-04
39	GO:0016149: translation release factor activity, codon specific	6.66E-04
40	GO:0009882: blue light photoreceptor activity	6.66E-04
41	GO:0008080: N-acetyltransferase activity	8.17E-04
42	GO:0016853: isomerase activity	8.75E-04
43	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.84E-04
44	GO:0008453: alanine-glyoxylate transaminase activity	8.84E-04
45	GO:0043495: protein anchor	8.84E-04
46	GO:0004605: phosphatidate cytidylyltransferase activity	1.37E-03
47	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.64E-03
48	GO:0004559: alpha-mannosidase activity	1.64E-03
49	GO:0019899: enzyme binding	1.92E-03
50	GO:0004034: aldose 1-epimerase activity	2.22E-03
51	GO:0004033: aldo-keto reductase (NADP) activity	2.22E-03
52	GO:0005375: copper ion transmembrane transporter activity	2.54E-03
53	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.54E-03
54	GO:0003747: translation release factor activity	2.87E-03
55	GO:0045309: protein phosphorylated amino acid binding	3.21E-03
56	GO:0051287: NAD binding	3.61E-03
57	GO:0019904: protein domain specific binding	3.94E-03
58	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.71E-03
59	GO:0000155: phosphorelay sensor kinase activity	4.71E-03
60	GO:0031409: pigment binding	5.98E-03
61	GO:0005528: FK506 binding	6.42E-03
62	GO:0004176: ATP-dependent peptidase activity	7.34E-03
63	GO:0003727: single-stranded RNA binding	8.80E-03
64	GO:0004812: aminoacyl-tRNA ligase activity	9.31E-03
65	GO:0016887: ATPase activity	9.49E-03
66	GO:0010181: FMN binding	1.09E-02
67	GO:0003743: translation initiation factor activity	1.15E-02
68	GO:0048038: quinone binding	1.20E-02
69	GO:0042802: identical protein binding	1.25E-02
70	GO:0004518: nuclease activity	1.26E-02
71	GO:0016791: phosphatase activity	1.38E-02
72	GO:0030145: manganese ion binding	2.09E-02
73	GO:0050897: cobalt ion binding	2.09E-02
74	GO:0046872: metal ion binding	2.17E-02
75	GO:0050661: NADP binding	2.44E-02
76	GO:0005509: calcium ion binding	2.48E-02
77	GO:0005524: ATP binding	2.50E-02
78	GO:0043621: protein self-association	2.82E-02
79	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-02
80	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.98E-02
81	GO:0031625: ubiquitin protein ligase binding	3.55E-02
82	GO:0016491: oxidoreductase activity	3.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.04E-34
2	GO:0009535: chloroplast thylakoid membrane	7.18E-19
3	GO:0009570: chloroplast stroma	3.17E-10
4	GO:0009534: chloroplast thylakoid	6.84E-09
5	GO:0009941: chloroplast envelope	2.61E-08
6	GO:0009543: chloroplast thylakoid lumen	7.56E-06
7	GO:0009579: thylakoid	1.57E-05
8	GO:0009523: photosystem II	5.83E-05
9	GO:0009782: photosystem I antenna complex	1.22E-04
10	GO:0009707: chloroplast outer membrane	1.65E-04
11	GO:0031977: thylakoid lumen	2.90E-04
12	GO:0009654: photosystem II oxygen evolving complex	4.61E-04
13	GO:0042651: thylakoid membrane	4.61E-04
14	GO:0010007: magnesium chelatase complex	4.65E-04
15	GO:0008287: protein serine/threonine phosphatase complex	4.65E-04
16	GO:0031969: chloroplast membrane	5.63E-04
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	8.84E-04
18	GO:0019898: extrinsic component of membrane	9.36E-04
19	GO:0005778: peroxisomal membrane	1.27E-03
20	GO:0031359: integral component of chloroplast outer membrane	1.92E-03
21	GO:0042644: chloroplast nucleoid	2.87E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.87E-03
23	GO:0030095: chloroplast photosystem II	5.12E-03
24	GO:0030076: light-harvesting complex	5.54E-03
25	GO:0009295: nucleoid	1.44E-02
26	GO:0005747: mitochondrial respiratory chain complex I	3.80E-02
27	GO:0009706: chloroplast inner membrane	4.24E-02
28	GO:0048046: apoplast	4.76E-02
29	GO:0010287: plastoglobule	4.79E-02