co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043482: cellular pigment accumulation	0.00E+00
2	GO:0046085: adenosine metabolic process	0.00E+00
3	GO:2000786: positive regulation of autophagosome assembly	0.00E+00
4	GO:0090549: response to carbon starvation	0.00E+00
5	GO:0006474: N-terminal protein amino acid acetylation	6.58E-05
6	GO:2001006: regulation of cellulose biosynthetic process	6.58E-05
7	GO:0006432: phenylalanyl-tRNA aminoacylation	1.59E-04
8	GO:0051252: regulation of RNA metabolic process	1.59E-04
9	GO:0071668: plant-type cell wall assembly	1.59E-04
10	GO:0044419: interspecies interaction between organisms	1.59E-04
11	GO:0016569: covalent chromatin modification	2.38E-04
12	GO:0043617: cellular response to sucrose starvation	2.69E-04
13	GO:0046417: chorismate metabolic process	2.69E-04
14	GO:0006760: folic acid-containing compound metabolic process	2.69E-04
15	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	2.69E-04
16	GO:0006517: protein deglycosylation	2.69E-04
17	GO:0008333: endosome to lysosome transport	2.69E-04
18	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	2.69E-04
19	GO:0035067: negative regulation of histone acetylation	3.90E-04
20	GO:0009749: response to glucose	4.26E-04
21	GO:0031507: heterochromatin assembly	5.20E-04
22	GO:0009755: hormone-mediated signaling pathway	5.20E-04
23	GO:0015689: molybdate ion transport	5.20E-04
24	GO:0007219: Notch signaling pathway	5.20E-04
25	GO:0006749: glutathione metabolic process	5.20E-04
26	GO:0009117: nucleotide metabolic process	8.06E-04
27	GO:0006014: D-ribose metabolic process	8.06E-04
28	GO:0010555: response to mannitol	9.59E-04
29	GO:2000067: regulation of root morphogenesis	9.59E-04
30	GO:0000028: ribosomal small subunit assembly	1.29E-03
31	GO:0042255: ribosome assembly	1.29E-03
32	GO:0006491: N-glycan processing	1.29E-03
33	GO:0009744: response to sucrose	1.34E-03
34	GO:0006526: arginine biosynthetic process	1.47E-03
35	GO:0010204: defense response signaling pathway, resistance gene-independent	1.47E-03
36	GO:0009808: lignin metabolic process	1.47E-03
37	GO:0007186: G-protein coupled receptor signaling pathway	1.47E-03
38	GO:0098656: anion transmembrane transport	1.65E-03
39	GO:0042742: defense response to bacterium	1.99E-03
40	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.05E-03
41	GO:0006325: chromatin organization	2.05E-03
42	GO:0006995: cellular response to nitrogen starvation	2.05E-03
43	GO:0072593: reactive oxygen species metabolic process	2.26E-03
44	GO:0009073: aromatic amino acid family biosynthetic process	2.26E-03
45	GO:0009750: response to fructose	2.26E-03
46	GO:0016485: protein processing	2.26E-03
47	GO:0010015: root morphogenesis	2.26E-03
48	GO:2000028: regulation of photoperiodism, flowering	2.70E-03
49	GO:0002237: response to molecule of bacterial origin	2.93E-03
50	GO:0034976: response to endoplasmic reticulum stress	3.40E-03
51	GO:2000377: regulation of reactive oxygen species metabolic process	3.65E-03
52	GO:0006487: protein N-linked glycosylation	3.65E-03
53	GO:0016226: iron-sulfur cluster assembly	4.43E-03
54	GO:0042147: retrograde transport, endosome to Golgi	5.26E-03
55	GO:0080022: primary root development	5.55E-03
56	GO:0000413: protein peptidyl-prolyl isomerization	5.55E-03
57	GO:0010182: sugar mediated signaling pathway	5.85E-03
58	GO:0006342: chromatin silencing	5.85E-03
59	GO:0010154: fruit development	5.85E-03
60	GO:0009646: response to absence of light	6.15E-03
61	GO:0009737: response to abscisic acid	6.26E-03
62	GO:0048825: cotyledon development	6.45E-03
63	GO:0009791: post-embryonic development	6.45E-03
64	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.76E-03
65	GO:0032502: developmental process	7.08E-03
66	GO:0010090: trichome morphogenesis	7.40E-03
67	GO:0006914: autophagy	7.73E-03
68	GO:0006974: cellular response to DNA damage stimulus	9.44E-03
69	GO:0006888: ER to Golgi vesicle-mediated transport	9.79E-03
70	GO:0045454: cell redox homeostasis	9.94E-03
71	GO:0009407: toxin catabolic process	1.13E-02
72	GO:0010043: response to zinc ion	1.17E-02
73	GO:0045087: innate immune response	1.24E-02
74	GO:0009853: photorespiration	1.24E-02
75	GO:0048364: root development	1.28E-02
76	GO:0008152: metabolic process	1.35E-02
77	GO:0009926: auxin polar transport	1.49E-02
78	GO:0000154: rRNA modification	1.62E-02
79	GO:0009636: response to toxic substance	1.62E-02
80	GO:0009965: leaf morphogenesis	1.62E-02
81	GO:0046686: response to cadmium ion	1.70E-02
82	GO:0010224: response to UV-B	1.88E-02
83	GO:0009908: flower development	1.97E-02
84	GO:0051726: regulation of cell cycle	2.46E-02
85	GO:0000398: mRNA splicing, via spliceosome	2.62E-02
86	GO:0006457: protein folding	2.83E-02
87	GO:0006633: fatty acid biosynthetic process	3.26E-02
88	GO:0007623: circadian rhythm	3.49E-02
89	GO:0010150: leaf senescence	3.49E-02
90	GO:0010228: vegetative to reproductive phase transition of meristem	3.60E-02
91	GO:0006470: protein dephosphorylation	3.83E-02
92	GO:0008380: RNA splicing	3.95E-02
93	GO:0009651: response to salt stress	4.41E-02
94	GO:0009826: unidimensional cell growth	4.63E-02
95	GO:0009658: chloroplast organization	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
2	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
3	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
4	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
5	GO:0035064: methylated histone binding	2.95E-05
6	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	6.58E-05
7	GO:0019707: protein-cysteine S-acyltransferase activity	6.58E-05
8	GO:0008428: ribonuclease inhibitor activity	1.59E-04
9	GO:0004106: chorismate mutase activity	1.59E-04
10	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	1.59E-04
11	GO:0004596: peptide alpha-N-acetyltransferase activity	1.59E-04
12	GO:0004839: ubiquitin activating enzyme activity	1.59E-04
13	GO:0004826: phenylalanine-tRNA ligase activity	1.59E-04
14	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.59E-04
15	GO:0008649: rRNA methyltransferase activity	2.69E-04
16	GO:0001664: G-protein coupled receptor binding	2.69E-04
17	GO:0031683: G-protein beta/gamma-subunit complex binding	2.69E-04
18	GO:0035529: NADH pyrophosphatase activity	3.90E-04
19	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.90E-04
20	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	5.20E-04
21	GO:0015098: molybdate ion transmembrane transporter activity	5.20E-04
22	GO:0016407: acetyltransferase activity	6.60E-04
23	GO:0008948: oxaloacetate decarboxylase activity	6.60E-04
24	GO:0004747: ribokinase activity	9.59E-04
25	GO:0008143: poly(A) binding	1.12E-03
26	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.65E-03
27	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.65E-03
28	GO:0047617: acyl-CoA hydrolase activity	1.85E-03
29	GO:0008047: enzyme activator activity	2.05E-03
30	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.48E-03
31	GO:0000049: tRNA binding	2.48E-03
32	GO:0005315: inorganic phosphate transmembrane transporter activity	2.70E-03
33	GO:0004089: carbonate dehydratase activity	2.70E-03
34	GO:0004175: endopeptidase activity	2.93E-03
35	GO:0004190: aspartic-type endopeptidase activity	3.16E-03
36	GO:0003714: transcription corepressor activity	3.65E-03
37	GO:0004298: threonine-type endopeptidase activity	4.17E-03
38	GO:0003756: protein disulfide isomerase activity	4.98E-03
39	GO:0003727: single-stranded RNA binding	4.98E-03
40	GO:0008514: organic anion transmembrane transporter activity	4.98E-03
41	GO:0008080: N-acetyltransferase activity	5.85E-03
42	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.79E-03
43	GO:0004806: triglyceride lipase activity	9.79E-03
44	GO:0003746: translation elongation factor activity	1.24E-02
45	GO:0042393: histone binding	1.36E-02
46	GO:0004364: glutathione transferase activity	1.45E-02
47	GO:0046872: metal ion binding	1.46E-02
48	GO:0051537: 2 iron, 2 sulfur cluster binding	1.57E-02
49	GO:0043621: protein self-association	1.57E-02
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.66E-02
51	GO:0020037: heme binding	1.72E-02
52	GO:0008234: cysteine-type peptidase activity	1.98E-02
53	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.12E-02
54	GO:0003779: actin binding	2.31E-02
55	GO:0015035: protein disulfide oxidoreductase activity	2.41E-02
56	GO:0016787: hydrolase activity	2.53E-02
57	GO:0019843: rRNA binding	2.77E-02
58	GO:0030170: pyridoxal phosphate binding	2.99E-02
59	GO:0015144: carbohydrate transmembrane transporter activity	3.15E-02
60	GO:0008565: protein transporter activity	3.15E-02
61	GO:0005351: sugar:proton symporter activity	3.43E-02
62	GO:0042802: identical protein binding	4.13E-02
63	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-02
64	GO:0005215: transporter activity	4.86E-02
65	GO:0003682: chromatin binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0031417: NatC complex	0.00E+00
2	GO:0005662: DNA replication factor A complex	6.58E-05
3	GO:0005853: eukaryotic translation elongation factor 1 complex	2.69E-04
4	GO:0005798: Golgi-associated vesicle	8.06E-04
5	GO:0000974: Prp19 complex	8.06E-04
6	GO:0005771: multivesicular body	8.06E-04
7	GO:0030904: retromer complex	8.06E-04
8	GO:0005677: chromatin silencing complex	1.47E-03
9	GO:0019773: proteasome core complex, alpha-subunit complex	1.47E-03
10	GO:0005763: mitochondrial small ribosomal subunit	1.65E-03
11	GO:0071011: precatalytic spliceosome	1.85E-03
12	GO:0005747: mitochondrial respiratory chain complex I	2.18E-03
13	GO:0071013: catalytic step 2 spliceosome	2.26E-03
14	GO:0005737: cytoplasm	3.11E-03
15	GO:0005829: cytosol	3.26E-03
16	GO:0045271: respiratory chain complex I	3.90E-03
17	GO:0005839: proteasome core complex	4.17E-03
18	GO:0000785: chromatin	7.08E-03
19	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.34E-03
20	GO:0005794: Golgi apparatus	7.95E-03
21	GO:0043231: intracellular membrane-bounded organelle	1.35E-02
22	GO:0031902: late endosome membrane	1.40E-02
23	GO:0005856: cytoskeleton	1.62E-02
24	GO:0005789: endoplasmic reticulum membrane	1.66E-02
25	GO:0031966: mitochondrial membrane	1.75E-02
26	GO:0000502: proteasome complex	1.84E-02
27	GO:0016607: nuclear speck	2.12E-02
28	GO:0005834: heterotrimeric G-protein complex	2.17E-02
29	GO:0005759: mitochondrial matrix	3.26E-02
30	GO:0005615: extracellular space	3.78E-02