co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G44200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0006720: isoprenoid metabolic process	0.00E+00
3	GO:0048870: cell motility	0.00E+00
4	GO:0009249: protein lipoylation	0.00E+00
5	GO:0032780: negative regulation of ATPase activity	0.00E+00
6	GO:0009583: detection of light stimulus	0.00E+00
7	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
8	GO:0071000: response to magnetism	0.00E+00
9	GO:0046294: formaldehyde catabolic process	0.00E+00
10	GO:0009106: lipoate metabolic process	0.00E+00
11	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
12	GO:0032928: regulation of superoxide anion generation	0.00E+00
13	GO:0036172: thiamine salvage	0.00E+00
14	GO:0016576: histone dephosphorylation	0.00E+00
15	GO:0048856: anatomical structure development	0.00E+00
16	GO:0046085: adenosine metabolic process	0.00E+00
17	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
18	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
19	GO:0010343: singlet oxygen-mediated programmed cell death	4.99E-06
20	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.99E-06
21	GO:0010117: photoprotection	1.10E-04
22	GO:0033365: protein localization to organelle	1.58E-04
23	GO:0048438: floral whorl development	3.32E-04
24	GO:0006567: threonine catabolic process	3.32E-04
25	GO:0034970: histone H3-R2 methylation	3.32E-04
26	GO:0016487: farnesol metabolic process	3.32E-04
27	GO:0016031: tRNA import into mitochondrion	3.32E-04
28	GO:0034972: histone H3-R26 methylation	3.32E-04
29	GO:0043407: negative regulation of MAP kinase activity	3.32E-04
30	GO:0071266: 'de novo' L-methionine biosynthetic process	3.32E-04
31	GO:1902265: abscisic acid homeostasis	3.32E-04
32	GO:0019343: cysteine biosynthetic process via cystathionine	3.32E-04
33	GO:0019346: transsulfuration	3.32E-04
34	GO:0034971: histone H3-R17 methylation	3.32E-04
35	GO:0072387: flavin adenine dinucleotide metabolic process	3.32E-04
36	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.52E-04
37	GO:0016122: xanthophyll metabolic process	7.24E-04
38	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	7.24E-04
39	GO:1901529: positive regulation of anion channel activity	7.24E-04
40	GO:0010617: circadian regulation of calcium ion oscillation	7.24E-04
41	GO:0007163: establishment or maintenance of cell polarity	7.24E-04
42	GO:2000071: regulation of defense response by callose deposition	7.24E-04
43	GO:0099402: plant organ development	7.24E-04
44	GO:0035335: peptidyl-tyrosine dephosphorylation	7.24E-04
45	GO:0010476: gibberellin mediated signaling pathway	1.17E-03
46	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.17E-03
47	GO:0031022: nuclear migration along microfilament	1.17E-03
48	GO:1902448: positive regulation of shade avoidance	1.17E-03
49	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.17E-03
50	GO:0034051: negative regulation of plant-type hypersensitive response	1.17E-03
51	GO:1901672: positive regulation of systemic acquired resistance	1.17E-03
52	GO:0009150: purine ribonucleotide metabolic process	1.17E-03
53	GO:0071492: cellular response to UV-A	1.17E-03
54	GO:0045739: positive regulation of DNA repair	1.17E-03
55	GO:0010351: lithium ion transport	1.17E-03
56	GO:2000377: regulation of reactive oxygen species metabolic process	1.65E-03
57	GO:0033014: tetrapyrrole biosynthetic process	1.68E-03
58	GO:0009399: nitrogen fixation	1.68E-03
59	GO:1901332: negative regulation of lateral root development	1.68E-03
60	GO:1900864: mitochondrial RNA modification	2.26E-03
61	GO:0006545: glycine biosynthetic process	2.26E-03
62	GO:0071486: cellular response to high light intensity	2.26E-03
63	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.26E-03
64	GO:0042274: ribosomal small subunit biogenesis	2.26E-03
65	GO:0031935: regulation of chromatin silencing	2.26E-03
66	GO:0009765: photosynthesis, light harvesting	2.26E-03
67	GO:0071249: cellular response to nitrate	2.26E-03
68	GO:0006221: pyrimidine nucleotide biosynthetic process	2.26E-03
69	GO:0009965: leaf morphogenesis	2.26E-03
70	GO:0051567: histone H3-K9 methylation	2.26E-03
71	GO:0006749: glutathione metabolic process	2.26E-03
72	GO:0000956: nuclear-transcribed mRNA catabolic process	2.26E-03
73	GO:1902347: response to strigolactone	2.26E-03
74	GO:0009902: chloroplast relocation	2.26E-03
75	GO:0034613: cellular protein localization	2.26E-03
76	GO:0006542: glutamine biosynthetic process	2.26E-03
77	GO:0009229: thiamine diphosphate biosynthetic process	2.89E-03
78	GO:0009107: lipoate biosynthetic process	2.89E-03
79	GO:0000304: response to singlet oxygen	2.89E-03
80	GO:0030041: actin filament polymerization	2.89E-03
81	GO:0006544: glycine metabolic process	2.89E-03
82	GO:0098719: sodium ion import across plasma membrane	2.89E-03
83	GO:0046283: anthocyanin-containing compound metabolic process	2.89E-03
84	GO:0010118: stomatal movement	3.03E-03
85	GO:0010051: xylem and phloem pattern formation	3.03E-03
86	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.57E-03
87	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.57E-03
88	GO:0045962: positive regulation of development, heterochronic	3.57E-03
89	GO:0060918: auxin transport	3.57E-03
90	GO:0042793: transcription from plastid promoter	3.57E-03
91	GO:1901371: regulation of leaf morphogenesis	3.57E-03
92	GO:0010190: cytochrome b6f complex assembly	3.57E-03
93	GO:0007035: vacuolar acidification	3.57E-03
94	GO:0009228: thiamine biosynthetic process	3.57E-03
95	GO:0006574: valine catabolic process	3.57E-03
96	GO:0016458: gene silencing	3.57E-03
97	GO:0006563: L-serine metabolic process	3.57E-03
98	GO:0048444: floral organ morphogenesis	4.30E-03
99	GO:0010310: regulation of hydrogen peroxide metabolic process	4.30E-03
100	GO:0080036: regulation of cytokinin-activated signaling pathway	4.30E-03
101	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.30E-03
102	GO:0010076: maintenance of floral meristem identity	4.30E-03
103	GO:0010016: shoot system morphogenesis	4.30E-03
104	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.30E-03
105	GO:0009903: chloroplast avoidance movement	4.30E-03
106	GO:0048366: leaf development	4.57E-03
107	GO:0010090: trichome morphogenesis	4.59E-03
108	GO:0007050: cell cycle arrest	5.07E-03
109	GO:0080111: DNA demethylation	5.07E-03
110	GO:0000082: G1/S transition of mitotic cell cycle	5.07E-03
111	GO:0051510: regulation of unidimensional cell growth	5.07E-03
112	GO:0016126: sterol biosynthetic process	5.83E-03
113	GO:0010928: regulation of auxin mediated signaling pathway	5.89E-03
114	GO:0009704: de-etiolation	5.89E-03
115	GO:0045010: actin nucleation	5.89E-03
116	GO:0022900: electron transport chain	6.76E-03
117	GO:0009880: embryonic pattern specification	6.76E-03
118	GO:0019430: removal of superoxide radicals	6.76E-03
119	GO:0010100: negative regulation of photomorphogenesis	6.76E-03
120	GO:0032544: plastid translation	6.76E-03
121	GO:0000902: cell morphogenesis	7.67E-03
122	GO:0015780: nucleotide-sugar transport	7.67E-03
123	GO:0098656: anion transmembrane transport	7.67E-03
124	GO:0046916: cellular transition metal ion homeostasis	7.67E-03
125	GO:0006783: heme biosynthetic process	7.67E-03
126	GO:0009056: catabolic process	7.67E-03
127	GO:0032259: methylation	8.37E-03
128	GO:0051453: regulation of intracellular pH	8.61E-03
129	GO:1900426: positive regulation of defense response to bacterium	8.61E-03
130	GO:0009638: phototropism	8.61E-03
131	GO:0006779: porphyrin-containing compound biosynthetic process	8.61E-03
132	GO:0035999: tetrahydrofolate interconversion	8.61E-03
133	GO:1900865: chloroplast RNA modification	8.61E-03
134	GO:0048527: lateral root development	8.81E-03
135	GO:0009688: abscisic acid biosynthetic process	9.61E-03
136	GO:0009637: response to blue light	9.66E-03
137	GO:0009682: induced systemic resistance	1.06E-02
138	GO:0009737: response to abscisic acid	1.14E-02
139	GO:0006790: sulfur compound metabolic process	1.17E-02
140	GO:0010152: pollen maturation	1.17E-02
141	GO:0010582: floral meristem determinacy	1.17E-02
142	GO:0010075: regulation of meristem growth	1.28E-02
143	GO:0030048: actin filament-based movement	1.28E-02
144	GO:0010102: lateral root morphogenesis	1.28E-02
145	GO:0009785: blue light signaling pathway	1.28E-02
146	GO:0009266: response to temperature stimulus	1.40E-02
147	GO:0048440: carpel development	1.40E-02
148	GO:0000162: tryptophan biosynthetic process	1.63E-02
149	GO:0034976: response to endoplasmic reticulum stress	1.63E-02
150	GO:0006487: protein N-linked glycosylation	1.76E-02
151	GO:0007017: microtubule-based process	1.89E-02
152	GO:0006306: DNA methylation	2.02E-02
153	GO:0048367: shoot system development	2.06E-02
154	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.15E-02
155	GO:0007005: mitochondrion organization	2.15E-02
156	GO:0006012: galactose metabolic process	2.29E-02
157	GO:0048443: stamen development	2.43E-02
158	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.57E-02
159	GO:0015991: ATP hydrolysis coupled proton transport	2.72E-02
160	GO:0080022: primary root development	2.72E-02
161	GO:0010087: phloem or xylem histogenesis	2.72E-02
162	GO:0009958: positive gravitropism	2.87E-02
163	GO:0006520: cellular amino acid metabolic process	2.87E-02
164	GO:0006814: sodium ion transport	3.02E-02
165	GO:0042752: regulation of circadian rhythm	3.02E-02
166	GO:0009646: response to absence of light	3.02E-02
167	GO:0055114: oxidation-reduction process	3.15E-02
168	GO:0009851: auxin biosynthetic process	3.18E-02
169	GO:0008654: phospholipid biosynthetic process	3.18E-02
170	GO:0080156: mitochondrial mRNA modification	3.33E-02
171	GO:0002229: defense response to oomycetes	3.33E-02
172	GO:0010193: response to ozone	3.33E-02
173	GO:0006281: DNA repair	3.34E-02
174	GO:0007264: small GTPase mediated signal transduction	3.49E-02
175	GO:0030163: protein catabolic process	3.66E-02
176	GO:0071805: potassium ion transmembrane transport	3.99E-02
177	GO:0016579: protein deubiquitination	4.16E-02
178	GO:0010029: regulation of seed germination	4.51E-02
179	GO:0042128: nitrate assimilation	4.68E-02
180	GO:0006470: protein dephosphorylation	4.73E-02
181	GO:0006950: response to stress	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0052670: geraniol kinase activity	0.00E+00
2	GO:0052668: farnesol kinase activity	0.00E+00
3	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
4	GO:0009008: DNA-methyltransferase activity	0.00E+00
5	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
6	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
7	GO:0052671: geranylgeraniol kinase activity	0.00E+00
8	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
9	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
10	GO:0008170: N-methyltransferase activity	0.00E+00
11	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
12	GO:0042030: ATPase inhibitor activity	0.00E+00
13	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
14	GO:0004848: ureidoglycolate hydrolase activity	1.77E-05
15	GO:0000254: C-4 methylsterol oxidase activity	3.91E-05
16	GO:0004123: cystathionine gamma-lyase activity	3.32E-04
17	GO:0033549: MAP kinase phosphatase activity	3.32E-04
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.32E-04
19	GO:0004793: threonine aldolase activity	3.32E-04
20	GO:0004325: ferrochelatase activity	3.32E-04
21	GO:0004121: cystathionine beta-lyase activity	3.32E-04
22	GO:0019707: protein-cysteine S-acyltransferase activity	3.32E-04
23	GO:0008732: L-allo-threonine aldolase activity	3.32E-04
24	GO:0071949: FAD binding	5.18E-04
25	GO:0010331: gibberellin binding	7.24E-04
26	GO:0016415: octanoyltransferase activity	7.24E-04
27	GO:0004046: aminoacylase activity	7.24E-04
28	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	7.24E-04
29	GO:0035241: protein-arginine omega-N monomethyltransferase activity	7.24E-04
30	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	7.24E-04
31	GO:0017118: lipoyltransferase activity	7.24E-04
32	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	7.24E-04
33	GO:0008168: methyltransferase activity	7.33E-04
34	GO:0015266: protein channel activity	1.06E-03
35	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.17E-03
36	GO:0008469: histone-arginine N-methyltransferase activity	1.17E-03
37	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.17E-03
38	GO:0004180: carboxypeptidase activity	1.17E-03
39	GO:0019003: GDP binding	1.17E-03
40	GO:0003962: cystathionine gamma-synthase activity	1.17E-03
41	GO:0032403: protein complex binding	1.17E-03
42	GO:0000900: translation repressor activity, nucleic acid binding	1.17E-03
43	GO:0008649: rRNA methyltransferase activity	1.17E-03
44	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.68E-03
45	GO:0009882: blue light photoreceptor activity	1.68E-03
46	GO:0047627: adenylylsulfatase activity	1.68E-03
47	GO:0004834: tryptophan synthase activity	2.26E-03
48	GO:0010011: auxin binding	2.26E-03
49	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.26E-03
50	GO:0003824: catalytic activity	2.73E-03
51	GO:0004356: glutamate-ammonia ligase activity	2.89E-03
52	GO:0004372: glycine hydroxymethyltransferase activity	2.89E-03
53	GO:0008080: N-acetyltransferase activity	3.26E-03
54	GO:0004605: phosphatidate cytidylyltransferase activity	3.57E-03
55	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.57E-03
56	GO:0004784: superoxide dismutase activity	3.57E-03
57	GO:0015081: sodium ion transmembrane transporter activity	3.57E-03
58	GO:0016491: oxidoreductase activity	4.06E-03
59	GO:0016787: hydrolase activity	4.26E-03
60	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.30E-03
61	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.30E-03
62	GO:0009927: histidine phosphotransfer kinase activity	4.30E-03
63	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.07E-03
64	GO:0008143: poly(A) binding	5.07E-03
65	GO:0004034: aldose 1-epimerase activity	5.89E-03
66	GO:0015078: hydrogen ion transmembrane transporter activity	6.76E-03
67	GO:0046914: transition metal ion binding	6.76E-03
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.61E-03
69	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.67E-03
70	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.67E-03
71	GO:0001055: RNA polymerase II activity	8.61E-03
72	GO:0047617: acyl-CoA hydrolase activity	8.61E-03
73	GO:0004864: protein phosphatase inhibitor activity	9.61E-03
74	GO:0015386: potassium:proton antiporter activity	1.06E-02
75	GO:0004129: cytochrome-c oxidase activity	1.06E-02
76	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.06E-02
77	GO:0001054: RNA polymerase I activity	1.06E-02
78	GO:0001056: RNA polymerase III activity	1.17E-02
79	GO:0031072: heat shock protein binding	1.28E-02
80	GO:0005315: inorganic phosphate transmembrane transporter activity	1.28E-02
81	GO:0051287: NAD binding	1.51E-02
82	GO:0003887: DNA-directed DNA polymerase activity	1.63E-02
83	GO:0004725: protein tyrosine phosphatase activity	1.63E-02
84	GO:0005528: FK506 binding	1.76E-02
85	GO:0043424: protein histidine kinase binding	1.89E-02
86	GO:0005515: protein binding	1.99E-02
87	GO:0004176: ATP-dependent peptidase activity	2.02E-02
88	GO:0008514: organic anion transmembrane transporter activity	2.43E-02
89	GO:0003756: protein disulfide isomerase activity	2.43E-02
90	GO:0004386: helicase activity	2.63E-02
91	GO:0003713: transcription coactivator activity	2.87E-02
92	GO:0016853: isomerase activity	3.02E-02
93	GO:0004872: receptor activity	3.18E-02
94	GO:0048038: quinone binding	3.33E-02
95	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.33E-02
96	GO:0030170: pyridoxal phosphate binding	3.34E-02
97	GO:0015385: sodium:proton antiporter activity	3.66E-02
98	GO:0008237: metallopeptidase activity	3.99E-02
99	GO:0016168: chlorophyll binding	4.51E-02
100	GO:0008375: acetylglucosaminyltransferase activity	4.68E-02
101	GO:0004806: triglyceride lipase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	2.88E-08
3	GO:0005737: cytoplasm	1.06E-03
4	GO:0016605: PML body	1.17E-03
5	GO:0005875: microtubule associated complex	1.49E-03
6	GO:0042646: plastid nucleoid	1.68E-03
7	GO:1990726: Lsm1-7-Pat1 complex	1.68E-03
8	GO:0042651: thylakoid membrane	1.82E-03
9	GO:0009527: plastid outer membrane	2.26E-03
10	GO:0030286: dynein complex	2.26E-03
11	GO:0009517: PSII associated light-harvesting complex II	2.26E-03
12	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.26E-03
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.59E-03
14	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.89E-03
15	GO:0055035: plastid thylakoid membrane	2.89E-03
16	GO:0097526: spliceosomal tri-snRNP complex	2.89E-03
17	GO:0030140: trans-Golgi network transport vesicle	3.57E-03
18	GO:0031209: SCAR complex	3.57E-03
19	GO:0005747: mitochondrial respiratory chain complex I	3.67E-03
20	GO:0005689: U12-type spliceosomal complex	4.30E-03
21	GO:0009535: chloroplast thylakoid membrane	4.73E-03
22	GO:0031969: chloroplast membrane	4.94E-03
23	GO:0000123: histone acetyltransferase complex	5.07E-03
24	GO:0009295: nucleoid	5.19E-03
25	GO:0005688: U6 snRNP	5.89E-03
26	GO:0071004: U2-type prespliceosome	5.89E-03
27	GO:0046930: pore complex	6.76E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.67E-03
29	GO:0042644: chloroplast nucleoid	7.67E-03
30	GO:0016604: nuclear body	8.61E-03
31	GO:0009536: plastid	1.04E-02
32	GO:0071013: catalytic step 2 spliceosome	1.06E-02
33	GO:0009508: plastid chromosome	1.28E-02
34	GO:0031966: mitochondrial membrane	1.57E-02
35	GO:0000419: DNA-directed RNA polymerase V complex	1.63E-02
36	GO:0045271: respiratory chain complex I	1.89E-02
37	GO:0015935: small ribosomal subunit	2.02E-02
38	GO:0009941: chloroplast envelope	2.59E-02
39	GO:0005654: nucleoplasm	2.93E-02
40	GO:0009523: photosystem II	3.18E-02
41	GO:0071944: cell periphery	3.66E-02
42	GO:0032580: Golgi cisterna membrane	3.82E-02