co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
3	GO:0006364: rRNA processing	1.20E-05
4	GO:0000494: box C/D snoRNA 3'-end processing	1.77E-05
5	GO:1990258: histone glutamine methylation	1.77E-05
6	GO:0009967: positive regulation of signal transduction	4.61E-05
7	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.61E-05
8	GO:0006412: translation	4.65E-05
9	GO:0009855: determination of bilateral symmetry	1.23E-04
10	GO:0000460: maturation of 5.8S rRNA	1.69E-04
11	GO:0042273: ribosomal large subunit biogenesis	1.69E-04
12	GO:0000380: alternative mRNA splicing, via spliceosome	2.19E-04
13	GO:0010375: stomatal complex patterning	2.19E-04
14	GO:0031167: rRNA methylation	2.19E-04
15	GO:0000470: maturation of LSU-rRNA	2.72E-04
16	GO:0010374: stomatal complex development	3.84E-04
17	GO:0080186: developmental vegetative growth	3.84E-04
18	GO:0001558: regulation of cell growth	5.05E-04
19	GO:0001510: RNA methylation	5.05E-04
20	GO:0000387: spliceosomal snRNP assembly	6.32E-04
21	GO:0006413: translational initiation	8.05E-04
22	GO:0006626: protein targeting to mitochondrion	9.08E-04
23	GO:0006108: malate metabolic process	9.08E-04
24	GO:0030150: protein import into mitochondrial matrix	1.21E-03
25	GO:0051302: regulation of cell division	1.29E-03
26	GO:0042254: ribosome biogenesis	1.32E-03
27	GO:0071215: cellular response to abscisic acid stimulus	1.54E-03
28	GO:0070417: cellular response to cold	1.72E-03
29	GO:0008033: tRNA processing	1.81E-03
30	GO:0010197: polar nucleus fusion	1.90E-03
31	GO:0009960: endosperm development	1.90E-03
32	GO:0009735: response to cytokinin	3.76E-03
33	GO:0006099: tricarboxylic acid cycle	4.06E-03
34	GO:0000154: rRNA modification	5.07E-03
35	GO:0006414: translational elongation	6.12E-03
36	GO:0048367: shoot system development	6.60E-03
37	GO:0009553: embryo sac development	7.19E-03
38	GO:0009845: seed germination	9.06E-03
39	GO:0010468: regulation of gene expression	1.22E-02
40	GO:0009793: embryo development ending in seed dormancy	1.93E-02
41	GO:0048364: root development	2.32E-02
42	GO:0009734: auxin-activated signaling pathway	2.87E-02

Rank	GO Term	Adjusted P value
1	GO:0000166: nucleotide binding	1.63E-06
2	GO:0030515: snoRNA binding	2.68E-06
3	GO:0003735: structural constituent of ribosome	3.28E-06
4	GO:0001055: RNA polymerase II activity	7.57E-06
5	GO:0003723: RNA binding	1.47E-05
6	GO:0008746: NAD(P)+ transhydrogenase activity	1.77E-05
7	GO:1990259: histone-glutamine methyltransferase activity	1.77E-05
8	GO:0043021: ribonucleoprotein complex binding	4.61E-05
9	GO:0005078: MAP-kinase scaffold activity	4.61E-05
10	GO:0008649: rRNA methyltransferase activity	8.18E-05
11	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.18E-05
12	GO:0003746: translation elongation factor activity	2.06E-04
13	GO:0016615: malate dehydrogenase activity	2.72E-04
14	GO:0030060: L-malate dehydrogenase activity	3.27E-04
15	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.61E-04
16	GO:0008235: metalloexopeptidase activity	3.84E-04
17	GO:0008135: translation factor activity, RNA binding	5.05E-04
18	GO:0001054: RNA polymerase I activity	7.68E-04
19	GO:0001056: RNA polymerase III activity	8.38E-04
20	GO:0003743: translation initiation factor activity	9.96E-04
21	GO:0051087: chaperone binding	1.29E-03
22	GO:0003924: GTPase activity	2.34E-03
23	GO:0050897: cobalt ion binding	3.70E-03
24	GO:0005525: GTP binding	6.74E-03
25	GO:0008026: ATP-dependent helicase activity	7.64E-03
26	GO:0004871: signal transducer activity	2.00E-02
27	GO:0004519: endonuclease activity	2.39E-02

Rank	GO Term	Adjusted P value
1	GO:0005730: nucleolus	3.04E-09
2	GO:0005834: heterotrimeric G-protein complex	2.97E-07
3	GO:0031428: box C/D snoRNP complex	1.30E-06
4	GO:0022625: cytosolic large ribosomal subunit	6.07E-06
5	GO:0000418: DNA-directed RNA polymerase IV complex	9.27E-06
6	GO:0032040: small-subunit processome	1.33E-05
7	GO:0005665: DNA-directed RNA polymerase II, core complex	1.33E-05
8	GO:0000419: DNA-directed RNA polymerase V complex	2.42E-05
9	GO:0070545: PeBoW complex	4.61E-05
10	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.12E-04
11	GO:0005840: ribosome	1.52E-04
12	GO:0030687: preribosome, large subunit precursor	3.84E-04
13	GO:0005736: DNA-directed RNA polymerase I complex	5.68E-04
14	GO:0005666: DNA-directed RNA polymerase III complex	6.32E-04
15	GO:0015030: Cajal body	6.32E-04
16	GO:0022627: cytosolic small ribosomal subunit	1.12E-03
17	GO:0009532: plastid stroma	1.37E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.63E-03
19	GO:0009506: plasmodesma	1.78E-03
20	GO:0016592: mediator complex	2.29E-03
21	GO:0010319: stromule	2.60E-03
22	GO:0030529: intracellular ribonucleoprotein complex	2.80E-03
23	GO:0005618: cell wall	6.54E-03
24	GO:0005654: nucleoplasm	8.42E-03
25	GO:0005773: vacuole	9.48E-03
26	GO:0005759: mitochondrial matrix	1.01E-02
27	GO:0005737: cytoplasm	2.01E-02
28	GO:0005743: mitochondrial inner membrane	2.14E-02
29	GO:0022626: cytosolic ribosome	3.28E-02
30	GO:0005777: peroxisome	3.74E-02
31	GO:0005634: nucleus	3.97E-02