co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0033231: carbohydrate export	0.00E+00
6	GO:0090470: shoot organ boundary specification	0.00E+00
7	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
8	GO:0051246: regulation of protein metabolic process	0.00E+00
9	GO:0009661: chromoplast organization	0.00E+00
10	GO:0005997: xylulose metabolic process	0.00E+00
11	GO:0015995: chlorophyll biosynthetic process	1.33E-06
12	GO:0080005: photosystem stoichiometry adjustment	2.23E-06
13	GO:0009658: chloroplast organization	2.80E-06
14	GO:2001141: regulation of RNA biosynthetic process	1.87E-05
15	GO:0010021: amylopectin biosynthetic process	3.41E-05
16	GO:0016120: carotene biosynthetic process	5.47E-05
17	GO:0010190: cytochrome b6f complex assembly	8.04E-05
18	GO:1902334: fructose export from vacuole to cytoplasm	2.18E-04
19	GO:0010362: negative regulation of anion channel activity by blue light	2.18E-04
20	GO:0015755: fructose transport	2.18E-04
21	GO:0031426: polycistronic mRNA processing	2.18E-04
22	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.18E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.18E-04
24	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.18E-04
25	GO:0071277: cellular response to calcium ion	2.18E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	2.18E-04
27	GO:0015798: myo-inositol transport	2.18E-04
28	GO:0042371: vitamin K biosynthetic process	2.18E-04
29	GO:0071461: cellular response to redox state	2.18E-04
30	GO:0071482: cellular response to light stimulus	2.33E-04
31	GO:0009657: plastid organization	2.33E-04
32	GO:0055114: oxidation-reduction process	3.66E-04
33	GO:0006995: cellular response to nitrogen starvation	3.94E-04
34	GO:0006352: DNA-templated transcription, initiation	4.56E-04
35	GO:0016122: xanthophyll metabolic process	4.86E-04
36	GO:0080185: effector dependent induction by symbiont of host immune response	4.86E-04
37	GO:0046741: transport of virus in host, tissue to tissue	4.86E-04
38	GO:0009915: phloem sucrose loading	4.86E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.86E-04
40	GO:0042548: regulation of photosynthesis, light reaction	4.86E-04
41	GO:0000256: allantoin catabolic process	4.86E-04
42	GO:1904143: positive regulation of carotenoid biosynthetic process	4.86E-04
43	GO:0015979: photosynthesis	4.88E-04
44	GO:0018298: protein-chromophore linkage	4.90E-04
45	GO:0009767: photosynthetic electron transport chain	5.92E-04
46	GO:0005986: sucrose biosynthetic process	5.92E-04
47	GO:0007623: circadian rhythm	7.25E-04
48	GO:0005977: glycogen metabolic process	7.90E-04
49	GO:0010136: ureide catabolic process	7.90E-04
50	GO:0006013: mannose metabolic process	7.90E-04
51	GO:0006696: ergosterol biosynthetic process	7.90E-04
52	GO:0071836: nectar secretion	7.90E-04
53	GO:0009644: response to high light intensity	9.99E-04
54	GO:0007017: microtubule-based process	1.01E-03
55	GO:0010371: regulation of gibberellin biosynthetic process	1.13E-03
56	GO:0071484: cellular response to light intensity	1.13E-03
57	GO:0046653: tetrahydrofolate metabolic process	1.13E-03
58	GO:0010239: chloroplast mRNA processing	1.13E-03
59	GO:0006809: nitric oxide biosynthetic process	1.13E-03
60	GO:0006145: purine nucleobase catabolic process	1.13E-03
61	GO:0050482: arachidonic acid secretion	1.13E-03
62	GO:0043572: plastid fission	1.13E-03
63	GO:0016226: iron-sulfur cluster assembly	1.20E-03
64	GO:0009765: photosynthesis, light harvesting	1.50E-03
65	GO:0015994: chlorophyll metabolic process	1.50E-03
66	GO:0009902: chloroplast relocation	1.50E-03
67	GO:0016117: carotenoid biosynthetic process	1.54E-03
68	GO:0016123: xanthophyll biosynthetic process	1.91E-03
69	GO:0010117: photoprotection	1.91E-03
70	GO:0009791: post-embryonic development	2.06E-03
71	GO:0019252: starch biosynthetic process	2.06E-03
72	GO:0006555: methionine metabolic process	2.35E-03
73	GO:0000741: karyogamy	2.35E-03
74	GO:0009643: photosynthetic acclimation	2.35E-03
75	GO:0071805: potassium ion transmembrane transport	2.82E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	2.83E-03
77	GO:0009648: photoperiodism	2.83E-03
78	GO:0071470: cellular response to osmotic stress	2.83E-03
79	GO:0019509: L-methionine salvage from methylthioadenosine	2.83E-03
80	GO:0010189: vitamin E biosynthetic process	2.83E-03
81	GO:1900056: negative regulation of leaf senescence	3.33E-03
82	GO:0010038: response to metal ion	3.33E-03
83	GO:0006644: phospholipid metabolic process	3.86E-03
84	GO:0048564: photosystem I assembly	3.86E-03
85	GO:0009704: de-etiolation	3.86E-03
86	GO:0050821: protein stabilization	3.86E-03
87	GO:0007568: aging	4.76E-03
88	GO:0009821: alkaloid biosynthetic process	5.00E-03
89	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.00E-03
90	GO:0034765: regulation of ion transmembrane transport	5.00E-03
91	GO:0090333: regulation of stomatal closure	5.00E-03
92	GO:0048507: meristem development	5.00E-03
93	GO:0006783: heme biosynthetic process	5.00E-03
94	GO:0006754: ATP biosynthetic process	5.00E-03
95	GO:0000373: Group II intron splicing	5.00E-03
96	GO:0034599: cellular response to oxidative stress	5.46E-03
97	GO:1900426: positive regulation of defense response to bacterium	5.62E-03
98	GO:0009638: phototropism	5.62E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	5.62E-03
100	GO:0010380: regulation of chlorophyll biosynthetic process	5.62E-03
101	GO:0045036: protein targeting to chloroplast	6.25E-03
102	GO:0006259: DNA metabolic process	6.25E-03
103	GO:0051555: flavonol biosynthetic process	6.25E-03
104	GO:0009970: cellular response to sulfate starvation	6.25E-03
105	GO:0006782: protoporphyrinogen IX biosynthetic process	6.25E-03
106	GO:0009773: photosynthetic electron transport in photosystem I	6.91E-03
107	GO:0006265: DNA topological change	6.91E-03
108	GO:0043085: positive regulation of catalytic activity	6.91E-03
109	GO:0008285: negative regulation of cell proliferation	6.91E-03
110	GO:0009750: response to fructose	6.91E-03
111	GO:0016485: protein processing	6.91E-03
112	GO:0009725: response to hormone	8.30E-03
113	GO:0006829: zinc II ion transport	8.30E-03
114	GO:0009266: response to temperature stimulus	9.03E-03
115	GO:0006541: glutamine metabolic process	9.03E-03
116	GO:0010207: photosystem II assembly	9.03E-03
117	GO:0010020: chloroplast fission	9.03E-03
118	GO:0042343: indole glucosinolate metabolic process	9.79E-03
119	GO:0006071: glycerol metabolic process	1.06E-02
120	GO:0006833: water transport	1.06E-02
121	GO:0080147: root hair cell development	1.14E-02
122	GO:0045454: cell redox homeostasis	1.18E-02
123	GO:0055085: transmembrane transport	1.20E-02
124	GO:0010073: meristem maintenance	1.22E-02
125	GO:0051302: regulation of cell division	1.22E-02
126	GO:0051260: protein homooligomerization	1.30E-02
127	GO:0098542: defense response to other organism	1.30E-02
128	GO:0006366: transcription from RNA polymerase II promoter	1.30E-02
129	GO:0080092: regulation of pollen tube growth	1.39E-02
130	GO:0035428: hexose transmembrane transport	1.39E-02
131	GO:0010227: floral organ abscission	1.48E-02
132	GO:0009306: protein secretion	1.57E-02
133	GO:0070417: cellular response to cold	1.66E-02
134	GO:0010118: stomatal movement	1.75E-02
135	GO:0006606: protein import into nucleus	1.75E-02
136	GO:0042335: cuticle development	1.75E-02
137	GO:0042391: regulation of membrane potential	1.75E-02
138	GO:0034220: ion transmembrane transport	1.75E-02
139	GO:0046323: glucose import	1.85E-02
140	GO:0006662: glycerol ether metabolic process	1.85E-02
141	GO:0010197: polar nucleus fusion	1.85E-02
142	GO:0010182: sugar mediated signaling pathway	1.85E-02
143	GO:0007059: chromosome segregation	1.95E-02
144	GO:0009646: response to absence of light	1.95E-02
145	GO:0000302: response to reactive oxygen species	2.15E-02
146	GO:0010193: response to ozone	2.15E-02
147	GO:0010228: vegetative to reproductive phase transition of meristem	2.35E-02
148	GO:0030163: protein catabolic process	2.36E-02
149	GO:0006979: response to oxidative stress	2.44E-02
150	GO:0010468: regulation of gene expression	2.68E-02
151	GO:0010027: thylakoid membrane organization	2.79E-02
152	GO:0009816: defense response to bacterium, incompatible interaction	2.91E-02
153	GO:0010411: xyloglucan metabolic process	3.14E-02
154	GO:0006950: response to stress	3.14E-02
155	GO:0009416: response to light stimulus	3.17E-02
156	GO:0008219: cell death	3.37E-02
157	GO:0035556: intracellular signal transduction	3.39E-02
158	GO:0000160: phosphorelay signal transduction system	3.49E-02
159	GO:0006811: ion transport	3.62E-02
160	GO:0010043: response to zinc ion	3.74E-02
161	GO:0009910: negative regulation of flower development	3.74E-02
162	GO:0006865: amino acid transport	3.86E-02
163	GO:0009637: response to blue light	3.99E-02
164	GO:0009853: photorespiration	3.99E-02
165	GO:0006810: transport	4.22E-02
166	GO:0080167: response to karrikin	4.30E-02
167	GO:0006631: fatty acid metabolic process	4.51E-02
168	GO:0046777: protein autophosphorylation	4.59E-02
169	GO:0046686: response to cadmium ion	4.60E-02
170	GO:0042542: response to hydrogen peroxide	4.65E-02
171	GO:0044550: secondary metabolite biosynthetic process	4.66E-02
172	GO:0009744: response to sucrose	4.78E-02
173	GO:0009640: photomorphogenesis	4.78E-02
174	GO:0010114: response to red light	4.78E-02
175	GO:0042546: cell wall biogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0015284: fructose uniporter activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
5	GO:0022883: zinc efflux transmembrane transporter activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0008115: sarcosine oxidase activity	0.00E+00
8	GO:0009976: tocopherol cyclase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
13	GO:0004180: carboxypeptidase activity	8.14E-06
14	GO:0016851: magnesium chelatase activity	1.87E-05
15	GO:0001053: plastid sigma factor activity	3.41E-05
16	GO:0016987: sigma factor activity	3.41E-05
17	GO:0019899: enzyme binding	1.47E-04
18	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.18E-04
19	GO:0035671: enone reductase activity	2.18E-04
20	GO:0046906: tetrapyrrole binding	2.18E-04
21	GO:0004856: xylulokinase activity	2.18E-04
22	GO:0016783: sulfurtransferase activity	2.18E-04
23	GO:0008242: omega peptidase activity	2.18E-04
24	GO:0051996: squalene synthase activity	2.18E-04
25	GO:0030941: chloroplast targeting sequence binding	2.18E-04
26	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.56E-04
27	GO:0004047: aminomethyltransferase activity	4.86E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	4.86E-04
29	GO:0019156: isoamylase activity	4.86E-04
30	GO:0004046: aminoacylase activity	4.86E-04
31	GO:0005353: fructose transmembrane transporter activity	4.86E-04
32	GO:0034722: gamma-glutamyl-peptidase activity	4.86E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.86E-04
34	GO:0005366: myo-inositol:proton symporter activity	4.86E-04
35	GO:0008883: glutamyl-tRNA reductase activity	4.86E-04
36	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.90E-04
37	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.90E-04
38	GO:0046524: sucrose-phosphate synthase activity	7.90E-04
39	GO:0004373: glycogen (starch) synthase activity	7.90E-04
40	GO:0003913: DNA photolyase activity	7.90E-04
41	GO:0032947: protein complex scaffold	7.90E-04
42	GO:0004148: dihydrolipoyl dehydrogenase activity	7.90E-04
43	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.90E-04
44	GO:0050307: sucrose-phosphate phosphatase activity	7.90E-04
45	GO:0004096: catalase activity	7.90E-04
46	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.13E-03
47	GO:0048027: mRNA 5'-UTR binding	1.13E-03
48	GO:0004792: thiosulfate sulfurtransferase activity	1.13E-03
49	GO:0009882: blue light photoreceptor activity	1.13E-03
50	GO:0022891: substrate-specific transmembrane transporter activity	1.31E-03
51	GO:0051861: glycolipid binding	1.50E-03
52	GO:0009011: starch synthase activity	1.50E-03
53	GO:0043495: protein anchor	1.50E-03
54	GO:0016887: ATPase activity	1.65E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.91E-03
56	GO:0004623: phospholipase A2 activity	1.91E-03
57	GO:0005275: amine transmembrane transporter activity	1.91E-03
58	GO:0016853: isomerase activity	1.92E-03
59	GO:0005506: iron ion binding	1.99E-03
60	GO:0048038: quinone binding	2.20E-03
61	GO:0004709: MAP kinase kinase kinase activity	2.35E-03
62	GO:0000293: ferric-chelate reductase activity	2.35E-03
63	GO:0004556: alpha-amylase activity	2.35E-03
64	GO:0004559: alpha-mannosidase activity	2.83E-03
65	GO:0016157: sucrose synthase activity	2.83E-03
66	GO:0005242: inward rectifier potassium channel activity	2.83E-03
67	GO:0016168: chlorophyll binding	3.35E-03
68	GO:0016491: oxidoreductase activity	3.55E-03
69	GO:0008236: serine-type peptidase activity	3.92E-03
70	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.42E-03
71	GO:0050897: cobalt ion binding	4.76E-03
72	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.00E-03
73	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.00E-03
74	GO:0042802: identical protein binding	5.56E-03
75	GO:0016844: strictosidine synthase activity	5.62E-03
76	GO:0031072: heat shock protein binding	8.30E-03
77	GO:0000155: phosphorelay sensor kinase activity	8.30E-03
78	GO:0008081: phosphoric diester hydrolase activity	8.30E-03
79	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.08E-03
80	GO:0051119: sugar transmembrane transporter activity	9.79E-03
81	GO:0051536: iron-sulfur cluster binding	1.14E-02
82	GO:0001046: core promoter sequence-specific DNA binding	1.14E-02
83	GO:0015079: potassium ion transmembrane transporter activity	1.22E-02
84	GO:0004176: ATP-dependent peptidase activity	1.30E-02
85	GO:0003727: single-stranded RNA binding	1.57E-02
86	GO:0047134: protein-disulfide reductase activity	1.66E-02
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.67E-02
88	GO:0005249: voltage-gated potassium channel activity	1.75E-02
89	GO:0030551: cyclic nucleotide binding	1.75E-02
90	GO:0005515: protein binding	1.84E-02
91	GO:0008080: N-acetyltransferase activity	1.85E-02
92	GO:0015144: carbohydrate transmembrane transporter activity	1.95E-02
93	GO:0008565: protein transporter activity	1.95E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-02
95	GO:0005355: glucose transmembrane transporter activity	1.95E-02
96	GO:0010181: FMN binding	1.95E-02
97	GO:0004872: receptor activity	2.05E-02
98	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.15E-02
99	GO:0005351: sugar:proton symporter activity	2.19E-02
100	GO:0004518: nuclease activity	2.25E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.36E-02
102	GO:0016791: phosphatase activity	2.46E-02
103	GO:0008483: transaminase activity	2.57E-02
104	GO:0008237: metallopeptidase activity	2.57E-02
105	GO:0015250: water channel activity	2.79E-02
106	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.14E-02
107	GO:0004721: phosphoprotein phosphatase activity	3.14E-02
108	GO:0004222: metalloendopeptidase activity	3.62E-02
109	GO:0030145: manganese ion binding	3.74E-02
110	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.74E-02
111	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.25E-02
112	GO:0050661: NADP binding	4.38E-02
113	GO:0061630: ubiquitin protein ligase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.07E-22
2	GO:0009535: chloroplast thylakoid membrane	5.30E-13
3	GO:0009534: chloroplast thylakoid	3.49E-07
4	GO:0031969: chloroplast membrane	4.24E-07
5	GO:0030286: dynein complex	3.41E-05
6	GO:0042651: thylakoid membrane	6.42E-05
7	GO:0031972: chloroplast intermembrane space	2.18E-04
8	GO:0045254: pyruvate dehydrogenase complex	4.86E-04
9	GO:0010007: magnesium chelatase complex	7.90E-04
10	GO:0033281: TAT protein transport complex	7.90E-04
11	GO:0009941: chloroplast envelope	8.35E-04
12	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.50E-03
13	GO:0009706: chloroplast inner membrane	2.05E-03
14	GO:0009523: photosystem II	2.06E-03
15	GO:0010287: plastoglobule	2.55E-03
16	GO:0010319: stromule	2.82E-03
17	GO:0005773: vacuole	3.15E-03
18	GO:0031359: integral component of chloroplast outer membrane	3.33E-03
19	GO:0009501: amyloplast	3.86E-03
20	GO:0009705: plant-type vacuole membrane	4.10E-03
21	GO:0009707: chloroplast outer membrane	4.12E-03
22	GO:0009514: glyoxysome	4.42E-03
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.00E-03
24	GO:0042644: chloroplast nucleoid	5.00E-03
25	GO:0009570: chloroplast stroma	5.39E-03
26	GO:0031977: thylakoid lumen	6.20E-03
27	GO:0016324: apical plasma membrane	6.25E-03
28	GO:0043234: protein complex	1.06E-02
29	GO:0005875: microtubule associated complex	1.06E-02
30	GO:0005747: mitochondrial respiratory chain complex I	1.11E-02
31	GO:0009654: photosystem II oxygen evolving complex	1.22E-02
32	GO:0045271: respiratory chain complex I	1.22E-02
33	GO:0009532: plastid stroma	1.30E-02
34	GO:0005759: mitochondrial matrix	2.04E-02
35	GO:0019898: extrinsic component of membrane	2.05E-02
36	GO:0005887: integral component of plasma membrane	2.27E-02
37	GO:0009295: nucleoid	2.57E-02
38	GO:0005778: peroxisomal membrane	2.57E-02
39	GO:0005777: peroxisome	3.76E-02
40	GO:0009579: thylakoid	3.95E-02