co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
2	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
3	GO:0045047: protein targeting to ER	0.00E+00
4	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
5	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
6	GO:0019307: mannose biosynthetic process	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	5.09E-47
8	GO:0030163: protein catabolic process	3.26E-12
9	GO:0051603: proteolysis involved in cellular protein catabolic process	1.02E-11
10	GO:0030433: ubiquitin-dependent ERAD pathway	2.30E-11
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.07E-10
12	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.24E-10
13	GO:0046686: response to cadmium ion	1.03E-09
14	GO:0043248: proteasome assembly	1.17E-07
15	GO:0042176: regulation of protein catabolic process	1.17E-07
16	GO:0051788: response to misfolded protein	5.31E-07
17	GO:0010043: response to zinc ion	6.08E-06
18	GO:0045087: innate immune response	7.41E-06
19	GO:0034976: response to endoplasmic reticulum stress	8.13E-06
20	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.00E-04
21	GO:0035266: meristem growth	1.00E-04
22	GO:0007292: female gamete generation	1.00E-04
23	GO:0006434: seryl-tRNA aminoacylation	1.00E-04
24	GO:0061014: positive regulation of mRNA catabolic process	1.00E-04
25	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.00E-04
26	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.36E-04
27	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.36E-04
28	GO:0006212: uracil catabolic process	2.36E-04
29	GO:0019483: beta-alanine biosynthetic process	2.36E-04
30	GO:0015786: UDP-glucose transport	2.36E-04
31	GO:0006487: protein N-linked glycosylation	3.24E-04
32	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	3.92E-04
33	GO:0015783: GDP-fucose transport	3.92E-04
34	GO:0060968: regulation of gene silencing	3.92E-04
35	GO:0010498: proteasomal protein catabolic process	3.92E-04
36	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.92E-04
37	GO:0006013: mannose metabolic process	3.92E-04
38	GO:0055074: calcium ion homeostasis	3.92E-04
39	GO:0015992: proton transport	3.94E-04
40	GO:0006457: protein folding	4.93E-04
41	GO:0045454: cell redox homeostasis	4.99E-04
42	GO:0009553: embryo sac development	5.18E-04
43	GO:0046836: glycolipid transport	5.64E-04
44	GO:0009298: GDP-mannose biosynthetic process	5.64E-04
45	GO:0006571: tyrosine biosynthetic process	5.64E-04
46	GO:0072334: UDP-galactose transmembrane transport	5.64E-04
47	GO:0009647: skotomorphogenesis	5.64E-04
48	GO:0010587: miRNA catabolic process	5.64E-04
49	GO:0010255: glucose mediated signaling pathway	5.64E-04
50	GO:0001676: long-chain fatty acid metabolic process	5.64E-04
51	GO:0009651: response to salt stress	7.40E-04
52	GO:0009165: nucleotide biosynthetic process	7.50E-04
53	GO:0010363: regulation of plant-type hypersensitive response	7.50E-04
54	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	7.50E-04
55	GO:0036065: fucosylation	9.47E-04
56	GO:0048827: phyllome development	1.16E-03
57	GO:0048232: male gamete generation	1.16E-03
58	GO:0009793: embryo development ending in seed dormancy	1.25E-03
59	GO:1901001: negative regulation of response to salt stress	1.38E-03
60	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.38E-03
61	GO:0009094: L-phenylalanine biosynthetic process	1.38E-03
62	GO:0009554: megasporogenesis	1.38E-03
63	GO:0006499: N-terminal protein myristoylation	1.58E-03
64	GO:0048528: post-embryonic root development	1.62E-03
65	GO:0006744: ubiquinone biosynthetic process	1.62E-03
66	GO:0070370: cellular heat acclimation	1.62E-03
67	GO:0031540: regulation of anthocyanin biosynthetic process	1.87E-03
68	GO:0040029: regulation of gene expression, epigenetic	1.87E-03
69	GO:0006402: mRNA catabolic process	1.87E-03
70	GO:0010078: maintenance of root meristem identity	1.87E-03
71	GO:0030968: endoplasmic reticulum unfolded protein response	2.14E-03
72	GO:0043562: cellular response to nitrogen levels	2.14E-03
73	GO:0006631: fatty acid metabolic process	2.14E-03
74	GO:0007186: G-protein coupled receptor signaling pathway	2.14E-03
75	GO:0098656: anion transmembrane transport	2.41E-03
76	GO:0046685: response to arsenic-containing substance	2.41E-03
77	GO:0009965: leaf morphogenesis	2.61E-03
78	GO:0043067: regulation of programmed cell death	2.70E-03
79	GO:0010449: root meristem growth	2.70E-03
80	GO:0048829: root cap development	3.00E-03
81	GO:0048229: gametophyte development	3.31E-03
82	GO:0010015: root morphogenesis	3.31E-03
83	GO:0072593: reactive oxygen species metabolic process	3.31E-03
84	GO:0006820: anion transport	3.63E-03
85	GO:0009408: response to heat	3.92E-03
86	GO:0010102: lateral root morphogenesis	3.95E-03
87	GO:0009785: blue light signaling pathway	3.95E-03
88	GO:0006807: nitrogen compound metabolic process	3.95E-03
89	GO:0048364: root development	4.14E-03
90	GO:0009933: meristem structural organization	4.30E-03
91	GO:0009969: xyloglucan biosynthetic process	4.64E-03
92	GO:0019853: L-ascorbic acid biosynthetic process	4.64E-03
93	GO:0090351: seedling development	4.64E-03
94	GO:0009116: nucleoside metabolic process	5.37E-03
95	GO:0010187: negative regulation of seed germination	5.37E-03
96	GO:0006406: mRNA export from nucleus	5.37E-03
97	GO:0008299: isoprenoid biosynthetic process	5.75E-03
98	GO:0061077: chaperone-mediated protein folding	6.14E-03
99	GO:0009790: embryo development	6.44E-03
100	GO:0001944: vasculature development	6.94E-03
101	GO:0071215: cellular response to abscisic acid stimulus	6.94E-03
102	GO:0042127: regulation of cell proliferation	7.35E-03
103	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.78E-03
104	GO:0000413: protein peptidyl-prolyl isomerization	8.21E-03
105	GO:0048868: pollen tube development	8.65E-03
106	GO:0009556: microsporogenesis	9.56E-03
107	GO:0048825: cotyledon development	9.56E-03
108	GO:0009749: response to glucose	9.56E-03
109	GO:0010193: response to ozone	1.00E-02
110	GO:0009630: gravitropism	1.05E-02
111	GO:0009567: double fertilization forming a zygote and endosperm	1.15E-02
112	GO:0010286: heat acclimation	1.20E-02
113	GO:0016579: protein deubiquitination	1.25E-02
114	GO:0010027: thylakoid membrane organization	1.30E-02
115	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.35E-02
116	GO:0016049: cell growth	1.51E-02
117	GO:0008219: cell death	1.57E-02
118	GO:0009817: defense response to fungus, incompatible interaction	1.57E-02
119	GO:0010311: lateral root formation	1.62E-02
120	GO:0009832: plant-type cell wall biogenesis	1.62E-02
121	GO:0010119: regulation of stomatal movement	1.74E-02
122	GO:0000724: double-strand break repair via homologous recombination	1.80E-02
123	GO:0009867: jasmonic acid mediated signaling pathway	1.86E-02
124	GO:0008283: cell proliferation	2.22E-02
125	GO:0000209: protein polyubiquitination	2.29E-02
126	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.55E-02
127	GO:0006812: cation transport	2.61E-02
128	GO:0009809: lignin biosynthetic process	2.75E-02
129	GO:0006486: protein glycosylation	2.75E-02
130	GO:0009736: cytokinin-activated signaling pathway	2.75E-02
131	GO:0009734: auxin-activated signaling pathway	3.05E-02
132	GO:0048367: shoot system development	3.17E-02
133	GO:0048316: seed development	3.17E-02
134	GO:0009740: gibberellic acid mediated signaling pathway	3.38E-02
135	GO:0009735: response to cytokinin	3.51E-02
136	GO:0051726: regulation of cell cycle	3.68E-02
137	GO:0051301: cell division	4.18E-02
138	GO:0009845: seed germination	4.38E-02
139	GO:0007275: multicellular organism development	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0004615: phosphomannomutase activity	0.00E+00
3	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0016247: channel regulator activity	0.00E+00
6	GO:0005095: GTPase inhibitor activity	0.00E+00
7	GO:0004298: threonine-type endopeptidase activity	2.47E-46
8	GO:0008233: peptidase activity	1.81E-27
9	GO:0036402: proteasome-activating ATPase activity	3.07E-10
10	GO:0017025: TBP-class protein binding	7.73E-08
11	GO:0030234: enzyme regulator activity	2.06E-06
12	GO:0016887: ATPase activity	2.45E-06
13	GO:0003756: protein disulfide isomerase activity	2.12E-05
14	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	1.00E-04
15	GO:0004828: serine-tRNA ligase activity	1.00E-04
16	GO:1990381: ubiquitin-specific protease binding	1.00E-04
17	GO:0004175: endopeptidase activity	2.31E-04
18	GO:0050347: trans-octaprenyltranstransferase activity	2.36E-04
19	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.36E-04
20	GO:0004534: 5'-3' exoribonuclease activity	2.36E-04
21	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.36E-04
22	GO:0043130: ubiquitin binding	3.24E-04
23	GO:0005457: GDP-fucose transmembrane transporter activity	3.92E-04
24	GO:0001664: G-protein coupled receptor binding	3.92E-04
25	GO:0008253: 5'-nucleotidase activity	3.92E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	3.92E-04
27	GO:0031683: G-protein beta/gamma-subunit complex binding	3.92E-04
28	GO:0017089: glycolipid transporter activity	5.64E-04
29	GO:0004749: ribose phosphate diphosphokinase activity	5.64E-04
30	GO:0009678: hydrogen-translocating pyrophosphatase activity	5.64E-04
31	GO:0005460: UDP-glucose transmembrane transporter activity	5.64E-04
32	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	7.50E-04
33	GO:0004659: prenyltransferase activity	7.50E-04
34	GO:0015368: calcium:cation antiporter activity	7.50E-04
35	GO:0008409: 5'-3' exonuclease activity	7.50E-04
36	GO:0051861: glycolipid binding	7.50E-04
37	GO:0015369: calcium:proton antiporter activity	7.50E-04
38	GO:0005459: UDP-galactose transmembrane transporter activity	9.47E-04
39	GO:0031593: polyubiquitin binding	1.16E-03
40	GO:0051020: GTPase binding	1.38E-03
41	GO:0102391: decanoate--CoA ligase activity	1.38E-03
42	GO:0004467: long-chain fatty acid-CoA ligase activity	1.62E-03
43	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.62E-03
44	GO:0004427: inorganic diphosphatase activity	1.62E-03
45	GO:0015288: porin activity	1.87E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	1.87E-03
47	GO:0015491: cation:cation antiporter activity	1.87E-03
48	GO:0008308: voltage-gated anion channel activity	2.14E-03
49	GO:0008417: fucosyltransferase activity	2.41E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.70E-03
51	GO:0004161: dimethylallyltranstransferase activity	3.31E-03
52	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.63E-03
53	GO:0051082: unfolded protein binding	4.42E-03
54	GO:0004190: aspartic-type endopeptidase activity	4.64E-03
55	GO:0005528: FK506 binding	5.37E-03
56	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.14E-03
57	GO:0004540: ribonuclease activity	6.14E-03
58	GO:0008514: organic anion transmembrane transporter activity	7.35E-03
59	GO:0016853: isomerase activity	9.10E-03
60	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.00E-02
61	GO:0005515: protein binding	1.34E-02
62	GO:0050897: cobalt ion binding	1.74E-02
63	GO:0000166: nucleotide binding	3.84E-02
64	GO:0005524: ATP binding	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0019774: proteasome core complex, beta-subunit complex	0.00E+00
3	GO:0000502: proteasome complex	4.08E-78
4	GO:0005839: proteasome core complex	2.47E-46
5	GO:0019773: proteasome core complex, alpha-subunit complex	8.54E-23
6	GO:0005829: cytosol	3.30E-17
7	GO:0008540: proteasome regulatory particle, base subcomplex	4.54E-16
8	GO:0008541: proteasome regulatory particle, lid subcomplex	1.93E-15
9	GO:0031595: nuclear proteasome complex	3.55E-12
10	GO:0031597: cytosolic proteasome complex	6.85E-10
11	GO:0005737: cytoplasm	4.84E-09
12	GO:0005774: vacuolar membrane	8.04E-09
13	GO:0005788: endoplasmic reticulum lumen	5.50E-08
14	GO:0005838: proteasome regulatory particle	2.01E-06
15	GO:0000836: Hrd1p ubiquitin ligase complex	1.00E-04
16	GO:0044322: endoplasmic reticulum quality control compartment	1.00E-04
17	GO:0005773: vacuole	1.64E-04
18	GO:0009506: plasmodesma	2.18E-04
19	GO:0022626: cytosolic ribosome	2.83E-04
20	GO:0005634: nucleus	3.77E-04
21	GO:0046861: glyoxysomal membrane	3.92E-04
22	GO:0036513: Derlin-1 retrotranslocation complex	5.64E-04
23	GO:0005844: polysome	7.50E-04
24	GO:0005783: endoplasmic reticulum	1.18E-03
25	GO:0005886: plasma membrane	1.96E-03
26	GO:0000326: protein storage vacuole	2.14E-03
27	GO:0046930: pore complex	2.14E-03
28	GO:0009514: glyoxysome	2.14E-03
29	GO:0010494: cytoplasmic stress granule	2.41E-03
30	GO:0005769: early endosome	5.00E-03
31	GO:0005741: mitochondrial outer membrane	6.14E-03
32	GO:0009705: plant-type vacuole membrane	7.61E-03
33	GO:0048046: apoplast	1.03E-02
34	GO:0016592: mediator complex	1.05E-02
35	GO:0032580: Golgi cisterna membrane	1.15E-02
36	GO:0000932: P-body	1.30E-02
37	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.30E-02
38	GO:0019005: SCF ubiquitin ligase complex	1.57E-02
39	GO:0000325: plant-type vacuole	1.74E-02
40	GO:0005819: spindle	1.97E-02
41	GO:0009505: plant-type cell wall	2.64E-02
42	GO:0005747: mitochondrial respiratory chain complex I	3.17E-02
43	GO:0005834: heterotrimeric G-protein complex	3.24E-02
44	GO:0009524: phragmoplast	4.30E-02
45	GO:0005777: peroxisome	4.40E-02
46	GO:0005759: mitochondrial matrix	4.87E-02