co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032928: regulation of superoxide anion generation	0.00E+00
2	GO:0009106: lipoate metabolic process	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0042817: pyridoxal metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0009946: proximal/distal axis specification	0.00E+00
7	GO:0009249: protein lipoylation	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
10	GO:0009583: detection of light stimulus	0.00E+00
11	GO:0090470: shoot organ boundary specification	0.00E+00
12	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
13	GO:0071000: response to magnetism	0.00E+00
14	GO:0046460: neutral lipid biosynthetic process	0.00E+00
15	GO:0046294: formaldehyde catabolic process	0.00E+00
16	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.48E-06
17	GO:0010343: singlet oxygen-mediated programmed cell death	4.48E-06
18	GO:2001141: regulation of RNA biosynthetic process	3.55E-05
19	GO:0009902: chloroplast relocation	6.35E-05
20	GO:0010117: photoprotection	1.00E-04
21	GO:0009658: chloroplast organization	1.24E-04
22	GO:0034971: histone H3-R17 methylation	3.14E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	3.14E-04
24	GO:0042371: vitamin K biosynthetic process	3.14E-04
25	GO:0071454: cellular response to anoxia	3.14E-04
26	GO:0071461: cellular response to redox state	3.14E-04
27	GO:0048438: floral whorl development	3.14E-04
28	GO:0034970: histone H3-R2 methylation	3.14E-04
29	GO:0010362: negative regulation of anion channel activity by blue light	3.14E-04
30	GO:0034972: histone H3-R26 methylation	3.14E-04
31	GO:1902265: abscisic acid homeostasis	3.14E-04
32	GO:0009451: RNA modification	3.20E-04
33	GO:0048564: photosystem I assembly	3.24E-04
34	GO:0071482: cellular response to light stimulus	3.98E-04
35	GO:0009638: phototropism	5.66E-04
36	GO:0009098: leucine biosynthetic process	5.66E-04
37	GO:0045036: protein targeting to chloroplast	6.60E-04
38	GO:0010617: circadian regulation of calcium ion oscillation	6.87E-04
39	GO:0007154: cell communication	6.87E-04
40	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.87E-04
41	GO:0099402: plant organ development	6.87E-04
42	GO:0016122: xanthophyll metabolic process	6.87E-04
43	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	6.87E-04
44	GO:0080153: negative regulation of reductive pentose-phosphate cycle	6.87E-04
45	GO:0006739: NADP metabolic process	6.87E-04
46	GO:1901529: positive regulation of anion channel activity	6.87E-04
47	GO:0060359: response to ammonium ion	6.87E-04
48	GO:0048255: mRNA stabilization	6.87E-04
49	GO:0080005: photosystem stoichiometry adjustment	6.87E-04
50	GO:0006352: DNA-templated transcription, initiation	7.62E-04
51	GO:0009767: photosynthetic electron transport chain	9.84E-04
52	GO:1901672: positive regulation of systemic acquired resistance	1.11E-03
53	GO:0009150: purine ribonucleotide metabolic process	1.11E-03
54	GO:0071492: cellular response to UV-A	1.11E-03
55	GO:0006696: ergosterol biosynthetic process	1.11E-03
56	GO:0071836: nectar secretion	1.11E-03
57	GO:0043157: response to cation stress	1.11E-03
58	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.11E-03
59	GO:0010338: leaf formation	1.11E-03
60	GO:0031022: nuclear migration along microfilament	1.11E-03
61	GO:1902448: positive regulation of shade avoidance	1.11E-03
62	GO:0010207: photosystem II assembly	1.11E-03
63	GO:0009637: response to blue light	1.28E-03
64	GO:0008615: pyridoxine biosynthetic process	1.60E-03
65	GO:1901332: negative regulation of lateral root development	1.60E-03
66	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.60E-03
67	GO:0006882: cellular zinc ion homeostasis	1.60E-03
68	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.60E-03
69	GO:0010371: regulation of gibberellin biosynthetic process	1.60E-03
70	GO:1902476: chloride transmembrane transport	1.60E-03
71	GO:0090307: mitotic spindle assembly	1.60E-03
72	GO:0033014: tetrapyrrole biosynthetic process	1.60E-03
73	GO:0007017: microtubule-based process	1.68E-03
74	GO:0006734: NADH metabolic process	2.14E-03
75	GO:1902347: response to strigolactone	2.14E-03
76	GO:0034613: cellular protein localization	2.14E-03
77	GO:0071486: cellular response to high light intensity	2.14E-03
78	GO:0042274: ribosomal small subunit biogenesis	2.14E-03
79	GO:0031935: regulation of chromatin silencing	2.14E-03
80	GO:0009765: photosynthesis, light harvesting	2.14E-03
81	GO:0045088: regulation of innate immune response	2.14E-03
82	GO:0031122: cytoplasmic microtubule organization	2.14E-03
83	GO:0016117: carotenoid biosynthetic process	2.59E-03
84	GO:0016120: carotene biosynthetic process	2.74E-03
85	GO:0046283: anthocyanin-containing compound metabolic process	2.74E-03
86	GO:0009107: lipoate biosynthetic process	2.74E-03
87	GO:0016123: xanthophyll biosynthetic process	2.74E-03
88	GO:0000304: response to singlet oxygen	2.74E-03
89	GO:0010118: stomatal movement	2.80E-03
90	GO:0010197: polar nucleus fusion	3.01E-03
91	GO:0009958: positive gravitropism	3.01E-03
92	GO:1901371: regulation of leaf morphogenesis	3.38E-03
93	GO:0000741: karyogamy	3.38E-03
94	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.38E-03
95	GO:0016070: RNA metabolic process	3.38E-03
96	GO:0009959: negative gravitropism	3.38E-03
97	GO:0031053: primary miRNA processing	3.38E-03
98	GO:0060918: auxin transport	3.38E-03
99	GO:0042793: transcription from plastid promoter	3.38E-03
100	GO:0010190: cytochrome b6f complex assembly	3.38E-03
101	GO:0010076: maintenance of floral meristem identity	4.06E-03
102	GO:0034389: lipid particle organization	4.06E-03
103	GO:0017148: negative regulation of translation	4.06E-03
104	GO:0009903: chloroplast avoidance movement	4.06E-03
105	GO:0010019: chloroplast-nucleus signaling pathway	4.06E-03
106	GO:0010310: regulation of hydrogen peroxide metabolic process	4.06E-03
107	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.06E-03
108	GO:0030026: cellular manganese ion homeostasis	4.80E-03
109	GO:0080111: DNA demethylation	4.80E-03
110	GO:0051510: regulation of unidimensional cell growth	4.80E-03
111	GO:1900056: negative regulation of leaf senescence	4.80E-03
112	GO:0006821: chloride transport	4.80E-03
113	GO:0016126: sterol biosynthetic process	5.37E-03
114	GO:0009704: de-etiolation	5.57E-03
115	GO:0009231: riboflavin biosynthetic process	5.57E-03
116	GO:0045292: mRNA cis splicing, via spliceosome	5.57E-03
117	GO:0010928: regulation of auxin mediated signaling pathway	5.57E-03
118	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.57E-03
119	GO:0010100: negative regulation of photomorphogenesis	6.39E-03
120	GO:0032544: plastid translation	6.39E-03
121	GO:0022900: electron transport chain	6.39E-03
122	GO:0019430: removal of superoxide radicals	6.39E-03
123	GO:0018298: protein-chromophore linkage	7.02E-03
124	GO:0019432: triglyceride biosynthetic process	7.24E-03
125	GO:0046916: cellular transition metal ion homeostasis	7.24E-03
126	GO:0006783: heme biosynthetic process	7.24E-03
127	GO:0015780: nucleotide-sugar transport	7.24E-03
128	GO:0009821: alkaloid biosynthetic process	7.24E-03
129	GO:0006811: ion transport	7.74E-03
130	GO:0009910: negative regulation of flower development	8.12E-03
131	GO:0008356: asymmetric cell division	8.14E-03
132	GO:1900426: positive regulation of defense response to bacterium	8.14E-03
133	GO:0006779: porphyrin-containing compound biosynthetic process	8.14E-03
134	GO:0010380: regulation of chlorophyll biosynthetic process	8.14E-03
135	GO:0010228: vegetative to reproductive phase transition of meristem	8.57E-03
136	GO:0009688: abscisic acid biosynthetic process	9.07E-03
137	GO:0051555: flavonol biosynthetic process	9.07E-03
138	GO:0055062: phosphate ion homeostasis	9.07E-03
139	GO:0043085: positive regulation of catalytic activity	1.00E-02
140	GO:0008285: negative regulation of cell proliferation	1.00E-02
141	GO:0006816: calcium ion transport	1.00E-02
142	GO:0045037: protein import into chloroplast stroma	1.11E-02
143	GO:0010582: floral meristem determinacy	1.11E-02
144	GO:0006790: sulfur compound metabolic process	1.11E-02
145	GO:0009640: photomorphogenesis	1.15E-02
146	GO:0009744: response to sucrose	1.15E-02
147	GO:0009785: blue light signaling pathway	1.21E-02
148	GO:0010075: regulation of meristem growth	1.21E-02
149	GO:0009725: response to hormone	1.21E-02
150	GO:0005986: sucrose biosynthetic process	1.21E-02
151	GO:0030048: actin filament-based movement	1.21E-02
152	GO:0006810: transport	1.25E-02
153	GO:0009965: leaf morphogenesis	1.29E-02
154	GO:0019253: reductive pentose-phosphate cycle	1.32E-02
155	GO:0009266: response to temperature stimulus	1.32E-02
156	GO:0034605: cellular response to heat	1.32E-02
157	GO:0006071: glycerol metabolic process	1.54E-02
158	GO:0000162: tryptophan biosynthetic process	1.54E-02
159	GO:0006289: nucleotide-excision repair	1.66E-02
160	GO:2000377: regulation of reactive oxygen species metabolic process	1.66E-02
161	GO:0009944: polarity specification of adaxial/abaxial axis	1.66E-02
162	GO:0010073: meristem maintenance	1.78E-02
163	GO:0009416: response to light stimulus	1.88E-02
164	GO:0016226: iron-sulfur cluster assembly	2.03E-02
165	GO:0010227: floral organ abscission	2.16E-02
166	GO:0070417: cellular response to cold	2.43E-02
167	GO:0010051: xylem and phloem pattern formation	2.57E-02
168	GO:0010087: phloem or xylem histogenesis	2.57E-02
169	GO:0042752: regulation of circadian rhythm	2.85E-02
170	GO:0009646: response to absence of light	2.85E-02
171	GO:0032259: methylation	2.86E-02
172	GO:0009851: auxin biosynthetic process	3.00E-02
173	GO:0009791: post-embryonic development	3.00E-02
174	GO:0019761: glucosinolate biosynthetic process	3.30E-02
175	GO:0009630: gravitropism	3.30E-02
176	GO:0007264: small GTPase mediated signal transduction	3.30E-02
177	GO:0030163: protein catabolic process	3.45E-02
178	GO:0007623: circadian rhythm	3.83E-02
179	GO:0000910: cytokinesis	3.92E-02
180	GO:0010027: thylakoid membrane organization	4.09E-02
181	GO:0009615: response to virus	4.09E-02
182	GO:0010029: regulation of seed germination	4.25E-02
183	GO:0009816: defense response to bacterium, incompatible interaction	4.25E-02
184	GO:0055114: oxidation-reduction process	4.34E-02
185	GO:0015995: chlorophyll biosynthetic process	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
10	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
11	GO:0004848: ureidoglycolate hydrolase activity	1.59E-05
12	GO:0009882: blue light photoreceptor activity	3.55E-05
13	GO:0001053: plastid sigma factor activity	6.35E-05
14	GO:0016987: sigma factor activity	6.35E-05
15	GO:0016783: sulfurtransferase activity	3.14E-04
16	GO:0004325: ferrochelatase activity	3.14E-04
17	GO:0051996: squalene synthase activity	3.14E-04
18	GO:0052856: NADHX epimerase activity	3.14E-04
19	GO:0052857: NADPHX epimerase activity	3.14E-04
20	GO:0030941: chloroplast targeting sequence binding	3.14E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.14E-04
22	GO:0046906: tetrapyrrole binding	3.14E-04
23	GO:0004733: pyridoxamine-phosphate oxidase activity	3.14E-04
24	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.14E-04
25	GO:0015085: calcium ion transmembrane transporter activity	3.14E-04
26	GO:0048038: quinone binding	4.24E-04
27	GO:0071949: FAD binding	4.78E-04
28	GO:0004046: aminoacylase activity	6.87E-04
29	GO:0035241: protein-arginine omega-N monomethyltransferase activity	6.87E-04
30	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.87E-04
31	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.87E-04
32	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	6.87E-04
33	GO:0017118: lipoyltransferase activity	6.87E-04
34	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	6.87E-04
35	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.87E-04
36	GO:0016415: octanoyltransferase activity	6.87E-04
37	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.87E-04
38	GO:0004222: metalloendopeptidase activity	1.07E-03
39	GO:0016491: oxidoreductase activity	1.10E-03
40	GO:0019003: GDP binding	1.11E-03
41	GO:0000900: translation repressor activity, nucleic acid binding	1.11E-03
42	GO:0003861: 3-isopropylmalate dehydratase activity	1.11E-03
43	GO:0003935: GTP cyclohydrolase II activity	1.11E-03
44	GO:0008469: histone-arginine N-methyltransferase activity	1.11E-03
45	GO:0008430: selenium binding	1.11E-03
46	GO:0004180: carboxypeptidase activity	1.11E-03
47	GO:0046524: sucrose-phosphate synthase activity	1.11E-03
48	GO:0032947: protein complex scaffold	1.11E-03
49	GO:0004792: thiosulfate sulfurtransferase activity	1.60E-03
50	GO:0016851: magnesium chelatase activity	1.60E-03
51	GO:0000339: RNA cap binding	1.60E-03
52	GO:0047627: adenylylsulfatase activity	1.60E-03
53	GO:0043023: ribosomal large subunit binding	1.60E-03
54	GO:0000254: C-4 methylsterol oxidase activity	1.60E-03
55	GO:0004176: ATP-dependent peptidase activity	1.84E-03
56	GO:0005253: anion channel activity	2.14E-03
57	GO:0015368: calcium:cation antiporter activity	2.14E-03
58	GO:0004834: tryptophan synthase activity	2.14E-03
59	GO:0051861: glycolipid binding	2.14E-03
60	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.14E-03
61	GO:0015369: calcium:proton antiporter activity	2.14E-03
62	GO:0043015: gamma-tubulin binding	2.14E-03
63	GO:0004519: endonuclease activity	2.27E-03
64	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.57E-03
65	GO:0051011: microtubule minus-end binding	2.74E-03
66	GO:0008168: methyltransferase activity	2.97E-03
67	GO:0010181: FMN binding	3.24E-03
68	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.31E-03
69	GO:0000293: ferric-chelate reductase activity	3.38E-03
70	GO:0004784: superoxide dismutase activity	3.38E-03
71	GO:0005247: voltage-gated chloride channel activity	3.38E-03
72	GO:0022857: transmembrane transporter activity	3.73E-03
73	GO:0004518: nuclease activity	3.97E-03
74	GO:0004144: diacylglycerol O-acyltransferase activity	4.06E-03
75	GO:0016157: sucrose synthase activity	4.06E-03
76	GO:0015631: tubulin binding	4.06E-03
77	GO:0008237: metallopeptidase activity	4.79E-03
78	GO:0019899: enzyme binding	4.80E-03
79	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.80E-03
80	GO:0046914: transition metal ion binding	6.39E-03
81	GO:0016844: strictosidine synthase activity	8.14E-03
82	GO:0001055: RNA polymerase II activity	8.14E-03
83	GO:0004713: protein tyrosine kinase activity	9.07E-03
84	GO:0008194: UDP-glycosyltransferase activity	9.33E-03
85	GO:0004129: cytochrome-c oxidase activity	1.00E-02
86	GO:0001054: RNA polymerase I activity	1.00E-02
87	GO:0004860: protein kinase inhibitor activity	1.00E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	1.02E-02
89	GO:0001056: RNA polymerase III activity	1.11E-02
90	GO:0031072: heat shock protein binding	1.21E-02
91	GO:0000155: phosphorelay sensor kinase activity	1.21E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.32E-02
93	GO:0003887: DNA-directed DNA polymerase activity	1.54E-02
94	GO:0051536: iron-sulfur cluster binding	1.66E-02
95	GO:0003777: microtubule motor activity	1.72E-02
96	GO:0042803: protein homodimerization activity	2.47E-02
97	GO:0016740: transferase activity	2.52E-02
98	GO:0008080: N-acetyltransferase activity	2.71E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.85E-02
100	GO:0004872: receptor activity	3.00E-02
101	GO:0005200: structural constituent of cytoskeleton	3.77E-02
102	GO:0008483: transaminase activity	3.77E-02
103	GO:0016168: chlorophyll binding	4.25E-02
104	GO:0030247: polysaccharide binding	4.59E-02
105	GO:0008236: serine-type peptidase activity	4.76E-02
106	GO:0042802: identical protein binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	1.76E-22
3	GO:0009535: chloroplast thylakoid membrane	3.89E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.64E-07
5	GO:0030286: dynein complex	6.35E-05
6	GO:0031969: chloroplast membrane	2.04E-04
7	GO:0005845: mRNA cap binding complex	3.14E-04
8	GO:0009570: chloroplast stroma	6.64E-04
9	GO:0008274: gamma-tubulin ring complex	6.87E-04
10	GO:0005846: nuclear cap binding complex	6.87E-04
11	GO:0016605: PML body	1.11E-03
12	GO:0005875: microtubule associated complex	1.37E-03
13	GO:0000923: equatorial microtubule organizing center	1.60E-03
14	GO:0042646: plastid nucleoid	1.60E-03
15	GO:0009517: PSII associated light-harvesting complex II	2.14E-03
16	GO:0055035: plastid thylakoid membrane	2.74E-03
17	GO:0009536: plastid	2.91E-03
18	GO:0034707: chloride channel complex	3.38E-03
19	GO:0000793: condensed chromosome	3.38E-03
20	GO:0030140: trans-Golgi network transport vesicle	3.38E-03
21	GO:0009840: chloroplastic endopeptidase Clp complex	4.06E-03
22	GO:0009295: nucleoid	4.79E-03
23	GO:0031359: integral component of chloroplast outer membrane	4.80E-03
24	GO:0000123: histone acetyltransferase complex	4.80E-03
25	GO:0005623: cell	5.55E-03
26	GO:0005811: lipid particle	6.39E-03
27	GO:0046930: pore complex	6.39E-03
28	GO:0000922: spindle pole	7.24E-03
29	GO:0042644: chloroplast nucleoid	7.24E-03
30	GO:0016604: nuclear body	8.14E-03
31	GO:0009508: plastid chromosome	1.21E-02
32	GO:0043234: protein complex	1.54E-02
33	GO:0000419: DNA-directed RNA polymerase V complex	1.54E-02
34	GO:0042651: thylakoid membrane	1.78E-02
35	GO:0015935: small ribosomal subunit	1.91E-02
36	GO:0005773: vacuole	2.83E-02
37	GO:0009523: photosystem II	3.00E-02
38	GO:0043231: intracellular membrane-bounded organelle	3.41E-02
39	GO:0005622: intracellular	4.36E-02
40	GO:0009707: chloroplast outer membrane	4.93E-02