co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032499: detection of peptidoglycan	0.00E+00
2	GO:2001143: N-methylnicotinate transport	0.00E+00
3	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
4	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
5	GO:0006903: vesicle targeting	0.00E+00
6	GO:2001142: nicotinate transport	0.00E+00
7	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
8	GO:0009699: phenylpropanoid biosynthetic process	5.25E-09
9	GO:0006468: protein phosphorylation	2.39E-08
10	GO:0045227: capsule polysaccharide biosynthetic process	1.03E-05
11	GO:0033358: UDP-L-arabinose biosynthetic process	1.03E-05
12	GO:0006744: ubiquinone biosynthetic process	4.92E-05
13	GO:0051014: actin filament severing	1.08E-04
14	GO:0046244: salicylic acid catabolic process	1.08E-04
15	GO:0018920: glyphosate metabolic process	1.08E-04
16	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.08E-04
17	GO:0099636: cytoplasmic streaming	1.08E-04
18	GO:0032491: detection of molecule of fungal origin	1.08E-04
19	GO:0006083: acetate metabolic process	1.08E-04
20	GO:0019567: arabinose biosynthetic process	1.08E-04
21	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.08E-04
22	GO:0009073: aromatic amino acid family biosynthetic process	1.69E-04
23	GO:0052542: defense response by callose deposition	2.52E-04
24	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.52E-04
25	GO:0009805: coumarin biosynthetic process	2.52E-04
26	GO:0010372: positive regulation of gibberellin biosynthetic process	2.52E-04
27	GO:0090351: seedling development	2.87E-04
28	GO:0009225: nucleotide-sugar metabolic process	2.87E-04
29	GO:0009738: abscisic acid-activated signaling pathway	3.47E-04
30	GO:0010359: regulation of anion channel activity	4.19E-04
31	GO:0010165: response to X-ray	4.19E-04
32	GO:0046777: protein autophosphorylation	4.88E-04
33	GO:0006012: galactose metabolic process	5.16E-04
34	GO:0009800: cinnamic acid biosynthetic process	6.01E-04
35	GO:0002679: respiratory burst involved in defense response	6.01E-04
36	GO:0006612: protein targeting to membrane	6.01E-04
37	GO:0006893: Golgi to plasma membrane transport	6.01E-04
38	GO:0071323: cellular response to chitin	6.01E-04
39	GO:0046836: glycolipid transport	6.01E-04
40	GO:0048194: Golgi vesicle budding	6.01E-04
41	GO:0007231: osmosensory signaling pathway	6.01E-04
42	GO:0033500: carbohydrate homeostasis	7.98E-04
43	GO:0071219: cellular response to molecule of bacterial origin	7.98E-04
44	GO:1902347: response to strigolactone	7.98E-04
45	GO:0051764: actin crosslink formation	7.98E-04
46	GO:0009845: seed germination	8.86E-04
47	GO:0043484: regulation of RNA splicing	1.01E-03
48	GO:0006090: pyruvate metabolic process	1.01E-03
49	GO:0030041: actin filament polymerization	1.01E-03
50	GO:0006461: protein complex assembly	1.01E-03
51	GO:0032957: inositol trisphosphate metabolic process	1.01E-03
52	GO:0046855: inositol phosphate dephosphorylation	1.23E-03
53	GO:1902456: regulation of stomatal opening	1.23E-03
54	GO:1900425: negative regulation of defense response to bacterium	1.23E-03
55	GO:0033365: protein localization to organelle	1.23E-03
56	GO:0050665: hydrogen peroxide biosynthetic process	1.23E-03
57	GO:0048317: seed morphogenesis	1.23E-03
58	GO:0006559: L-phenylalanine catabolic process	1.23E-03
59	GO:0009423: chorismate biosynthetic process	1.47E-03
60	GO:1900056: negative regulation of leaf senescence	1.73E-03
61	GO:0051693: actin filament capping	1.73E-03
62	GO:0080186: developmental vegetative growth	1.73E-03
63	GO:0000338: protein deneddylation	1.73E-03
64	GO:0010119: regulation of stomatal movement	1.82E-03
65	GO:1900150: regulation of defense response to fungus	2.00E-03
66	GO:0006402: mRNA catabolic process	2.00E-03
67	GO:0045010: actin nucleation	2.00E-03
68	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.00E-03
69	GO:0009819: drought recovery	2.00E-03
70	GO:0006839: mitochondrial transport	2.26E-03
71	GO:0017004: cytochrome complex assembly	2.28E-03
72	GO:0009808: lignin metabolic process	2.28E-03
73	GO:0006972: hyperosmotic response	2.28E-03
74	GO:0015996: chlorophyll catabolic process	2.28E-03
75	GO:0060321: acceptance of pollen	2.28E-03
76	GO:0007062: sister chromatid cohesion	2.57E-03
77	GO:0080167: response to karrikin	2.71E-03
78	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-03
79	GO:0030042: actin filament depolymerization	2.88E-03
80	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.88E-03
81	GO:0007064: mitotic sister chromatid cohesion	3.20E-03
82	GO:0043069: negative regulation of programmed cell death	3.20E-03
83	GO:0010215: cellulose microfibril organization	3.20E-03
84	GO:0019538: protein metabolic process	3.20E-03
85	GO:0072593: reactive oxygen species metabolic process	3.53E-03
86	GO:0046856: phosphatidylinositol dephosphorylation	3.53E-03
87	GO:0009698: phenylpropanoid metabolic process	3.53E-03
88	GO:0010224: response to UV-B	3.55E-03
89	GO:0015706: nitrate transport	3.87E-03
90	GO:0000266: mitochondrial fission	3.87E-03
91	GO:0006108: malate metabolic process	4.23E-03
92	GO:2000028: regulation of photoperiodism, flowering	4.23E-03
93	GO:0046274: lignin catabolic process	4.23E-03
94	GO:0007015: actin filament organization	4.59E-03
95	GO:0006446: regulation of translational initiation	4.59E-03
96	GO:0006302: double-strand break repair	4.59E-03
97	GO:0034605: cellular response to heat	4.59E-03
98	GO:0070588: calcium ion transmembrane transport	4.96E-03
99	GO:0046854: phosphatidylinositol phosphorylation	4.96E-03
100	GO:0010167: response to nitrate	4.96E-03
101	GO:0018105: peptidyl-serine phosphorylation	5.01E-03
102	GO:0007010: cytoskeleton organization	5.75E-03
103	GO:0080147: root hair cell development	5.75E-03
104	GO:0051017: actin filament bundle assembly	5.75E-03
105	GO:0006487: protein N-linked glycosylation	5.75E-03
106	GO:0006874: cellular calcium ion homeostasis	6.15E-03
107	GO:0016310: phosphorylation	6.16E-03
108	GO:0040007: growth	7.42E-03
109	GO:0071215: cellular response to abscisic acid stimulus	7.42E-03
110	GO:0009306: protein secretion	7.87E-03
111	GO:0000271: polysaccharide biosynthetic process	8.79E-03
112	GO:0006606: protein import into nucleus	8.79E-03
113	GO:0042631: cellular response to water deprivation	8.79E-03
114	GO:0048868: pollen tube development	9.26E-03
115	GO:0009960: endosperm development	9.26E-03
116	GO:0045489: pectin biosynthetic process	9.26E-03
117	GO:0009611: response to wounding	9.45E-03
118	GO:0007166: cell surface receptor signaling pathway	9.60E-03
119	GO:0007059: chromosome segregation	9.74E-03
120	GO:0009646: response to absence of light	9.74E-03
121	GO:0035556: intracellular signal transduction	9.85E-03
122	GO:0031047: gene silencing by RNA	1.12E-02
123	GO:0032502: developmental process	1.12E-02
124	GO:0006904: vesicle docking involved in exocytosis	1.28E-02
125	GO:0016579: protein deubiquitination	1.34E-02
126	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.45E-02
127	GO:0042128: nitrate assimilation	1.51E-02
128	GO:0048573: photoperiodism, flowering	1.56E-02
129	GO:0016049: cell growth	1.62E-02
130	GO:0010200: response to chitin	1.67E-02
131	GO:0009817: defense response to fungus, incompatible interaction	1.68E-02
132	GO:0009832: plant-type cell wall biogenesis	1.74E-02
133	GO:0048767: root hair elongation	1.74E-02
134	GO:0009813: flavonoid biosynthetic process	1.74E-02
135	GO:0000724: double-strand break repair via homologous recombination	1.92E-02
136	GO:0045087: innate immune response	1.99E-02
137	GO:0016051: carbohydrate biosynthetic process	1.99E-02
138	GO:0006099: tricarboxylic acid cycle	2.05E-02
139	GO:0006887: exocytosis	2.25E-02
140	GO:0006631: fatty acid metabolic process	2.25E-02
141	GO:0042742: defense response to bacterium	2.25E-02
142	GO:0009640: photomorphogenesis	2.38E-02
143	GO:0006952: defense response	2.51E-02
144	GO:0009753: response to jasmonic acid	2.56E-02
145	GO:0009846: pollen germination	2.80E-02
146	GO:0009585: red, far-red light phototransduction	2.94E-02
147	GO:0009809: lignin biosynthetic process	2.94E-02
148	GO:0006486: protein glycosylation	2.94E-02
149	GO:0009873: ethylene-activated signaling pathway	3.08E-02
150	GO:0009651: response to salt stress	3.36E-02
151	GO:0006810: transport	3.62E-02
152	GO:0006396: RNA processing	3.86E-02
153	GO:0009555: pollen development	4.23E-02
154	GO:0009416: response to light stimulus	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
2	GO:2001080: chitosan binding	0.00E+00
3	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
4	GO:0090416: nicotinate transporter activity	0.00E+00
5	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
6	GO:0005524: ATP binding	6.32E-12
7	GO:0016301: kinase activity	1.61E-09
8	GO:0004674: protein serine/threonine kinase activity	1.11E-07
9	GO:0050373: UDP-arabinose 4-epimerase activity	1.03E-05
10	GO:0003978: UDP-glucose 4-epimerase activity	3.64E-05
11	GO:0004012: phospholipid-translocating ATPase activity	3.64E-05
12	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.08E-04
13	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	1.08E-04
14	GO:0003987: acetate-CoA ligase activity	1.08E-04
15	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.25E-04
16	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.52E-04
17	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.52E-04
18	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	4.19E-04
19	GO:0016174: NAD(P)H oxidase activity	4.19E-04
20	GO:0045548: phenylalanine ammonia-lyase activity	4.19E-04
21	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	6.01E-04
22	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	6.01E-04
23	GO:0017089: glycolipid transporter activity	6.01E-04
24	GO:0004445: inositol-polyphosphate 5-phosphatase activity	6.01E-04
25	GO:0004470: malic enzyme activity	7.98E-04
26	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	7.98E-04
27	GO:0051861: glycolipid binding	7.98E-04
28	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.98E-04
29	GO:0019199: transmembrane receptor protein kinase activity	7.98E-04
30	GO:0016757: transferase activity, transferring glycosyl groups	9.47E-04
31	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.23E-03
32	GO:0016208: AMP binding	1.23E-03
33	GO:0008375: acetylglucosaminyltransferase activity	1.36E-03
34	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.36E-03
35	GO:0004683: calmodulin-dependent protein kinase activity	1.43E-03
36	GO:0004656: procollagen-proline 4-dioxygenase activity	1.47E-03
37	GO:0004525: ribonuclease III activity	2.00E-03
38	GO:0004430: 1-phosphatidylinositol 4-kinase activity	2.28E-03
39	GO:0016207: 4-coumarate-CoA ligase activity	2.57E-03
40	GO:0015112: nitrate transmembrane transporter activity	2.88E-03
41	GO:0008378: galactosyltransferase activity	3.87E-03
42	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.87E-03
43	GO:0008139: nuclear localization sequence binding	4.23E-03
44	GO:0031072: heat shock protein binding	4.23E-03
45	GO:0005388: calcium-transporting ATPase activity	4.23E-03
46	GO:0003779: actin binding	4.72E-03
47	GO:0005217: intracellular ligand-gated ion channel activity	4.96E-03
48	GO:0008061: chitin binding	4.96E-03
49	GO:0004970: ionotropic glutamate receptor activity	4.96E-03
50	GO:0004190: aspartic-type endopeptidase activity	4.96E-03
51	GO:0031418: L-ascorbic acid binding	5.75E-03
52	GO:0003954: NADH dehydrogenase activity	5.75E-03
53	GO:0016758: transferase activity, transferring hexosyl groups	5.92E-03
54	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.56E-03
55	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.56E-03
56	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.99E-03
57	GO:0022891: substrate-specific transmembrane transporter activity	7.42E-03
58	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.82E-03
59	GO:0004842: ubiquitin-protein transferase activity	8.96E-03
60	GO:0008536: Ran GTPase binding	9.26E-03
61	GO:0042802: identical protein binding	1.07E-02
62	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.07E-02
63	GO:0004518: nuclease activity	1.12E-02
64	GO:0051015: actin filament binding	1.18E-02
65	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.28E-02
66	GO:0000287: magnesium ion binding	1.28E-02
67	GO:0005516: calmodulin binding	1.54E-02
68	GO:0030247: polysaccharide binding	1.56E-02
69	GO:0004222: metalloendopeptidase activity	1.80E-02
70	GO:0050897: cobalt ion binding	1.86E-02
71	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.86E-02
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.99E-02
73	GO:0042803: protein homodimerization activity	2.03E-02
74	GO:0005509: calcium ion binding	2.03E-02
75	GO:0005506: iron ion binding	2.20E-02
76	GO:0051287: NAD binding	2.73E-02
77	GO:0004672: protein kinase activity	3.62E-02
78	GO:0016874: ligase activity	3.63E-02
79	GO:0022857: transmembrane transporter activity	3.63E-02
80	GO:0003729: mRNA binding	3.68E-02
81	GO:0051082: unfolded protein binding	3.78E-02
82	GO:0016746: transferase activity, transferring acyl groups	3.86E-02
83	GO:0008026: ATP-dependent helicase activity	3.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	8.29E-10
2	GO:0016021: integral component of membrane	2.03E-07
3	GO:0045252: oxoglutarate dehydrogenase complex	1.08E-04
4	GO:0016442: RISC complex	1.08E-04
5	GO:0030915: Smc5-Smc6 complex	1.01E-03
6	GO:0005746: mitochondrial respiratory chain	1.01E-03
7	GO:0032580: Golgi cisterna membrane	1.03E-03
8	GO:0009514: glyoxysome	2.28E-03
9	GO:0008180: COP9 signalosome	2.57E-03
10	GO:0010494: cytoplasmic stress granule	2.57E-03
11	GO:0005856: cytoskeleton	2.87E-03
12	GO:0005884: actin filament	3.53E-03
13	GO:0090404: pollen tube tip	3.53E-03
14	GO:0048471: perinuclear region of cytoplasm	3.53E-03
15	GO:0005743: mitochondrial inner membrane	4.05E-03
16	GO:0031012: extracellular matrix	4.23E-03
17	GO:0005794: Golgi apparatus	5.41E-03
18	GO:0009524: phragmoplast	6.41E-03
19	GO:0005741: mitochondrial outer membrane	6.56E-03
20	GO:0031965: nuclear membrane	1.02E-02
21	GO:0000145: exocyst	1.12E-02
22	GO:0000932: P-body	1.39E-02
23	GO:0005802: trans-Golgi network	1.67E-02
24	GO:0031902: late endosome membrane	2.25E-02
25	GO:0090406: pollen tube	2.38E-02
26	GO:0043231: intracellular membrane-bounded organelle	2.64E-02
27	GO:0031966: mitochondrial membrane	2.80E-02
28	GO:0005635: nuclear envelope	3.09E-02
29	GO:0005887: integral component of plasma membrane	3.24E-02
30	GO:0000139: Golgi membrane	3.28E-02
31	GO:0016020: membrane	3.67E-02
32	GO:0005789: endoplasmic reticulum membrane	3.80E-02
33	GO:0005623: cell	4.52E-02