GO Enrichment Analysis of Co-expressed Genes with
AT5G41190
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090070: positive regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 2.04E-17 |
| 7 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.46E-10 |
| 8 | GO:0042254: ribosome biogenesis | 6.37E-08 |
| 9 | GO:0010501: RNA secondary structure unwinding | 5.24E-07 |
| 10 | GO:0009553: embryo sac development | 4.19E-05 |
| 11 | GO:1902182: shoot apical meristem development | 9.88E-05 |
| 12 | GO:2000232: regulation of rRNA processing | 9.88E-05 |
| 13 | GO:0043985: histone H4-R3 methylation | 9.88E-05 |
| 14 | GO:0009451: RNA modification | 1.27E-04 |
| 15 | GO:0080009: mRNA methylation | 2.32E-04 |
| 16 | GO:0034470: ncRNA processing | 2.32E-04 |
| 17 | GO:0009793: embryo development ending in seed dormancy | 3.00E-04 |
| 18 | GO:0045604: regulation of epidermal cell differentiation | 3.86E-04 |
| 19 | GO:0009561: megagametogenesis | 4.98E-04 |
| 20 | GO:0007276: gamete generation | 5.54E-04 |
| 21 | GO:0048825: cotyledon development | 7.16E-04 |
| 22 | GO:0000460: maturation of 5.8S rRNA | 7.37E-04 |
| 23 | GO:0006479: protein methylation | 7.37E-04 |
| 24 | GO:0046345: abscisic acid catabolic process | 7.37E-04 |
| 25 | GO:0042273: ribosomal large subunit biogenesis | 7.37E-04 |
| 26 | GO:0009790: embryo development | 8.37E-04 |
| 27 | GO:0000470: maturation of LSU-rRNA | 1.14E-03 |
| 28 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.14E-03 |
| 29 | GO:0048444: floral organ morphogenesis | 1.36E-03 |
| 30 | GO:0010077: maintenance of inflorescence meristem identity | 1.36E-03 |
| 31 | GO:0045995: regulation of embryonic development | 1.59E-03 |
| 32 | GO:0051301: cell division | 1.78E-03 |
| 33 | GO:0001522: pseudouridine synthesis | 1.84E-03 |
| 34 | GO:0000028: ribosomal small subunit assembly | 1.84E-03 |
| 35 | GO:0019827: stem cell population maintenance | 1.84E-03 |
| 36 | GO:0042255: ribosome assembly | 1.84E-03 |
| 37 | GO:0009880: embryonic pattern specification | 2.10E-03 |
| 38 | GO:2000024: regulation of leaf development | 2.37E-03 |
| 39 | GO:0001708: cell fate specification | 2.37E-03 |
| 40 | GO:0006349: regulation of gene expression by genetic imprinting | 2.65E-03 |
| 41 | GO:0006417: regulation of translation | 3.36E-03 |
| 42 | GO:0010582: floral meristem determinacy | 3.57E-03 |
| 43 | GO:2000012: regulation of auxin polar transport | 3.89E-03 |
| 44 | GO:0010030: positive regulation of seed germination | 4.57E-03 |
| 45 | GO:0030150: protein import into mitochondrial matrix | 5.28E-03 |
| 46 | GO:0051302: regulation of cell division | 5.65E-03 |
| 47 | GO:0006413: translational initiation | 6.92E-03 |
| 48 | GO:0006342: chromatin silencing | 8.50E-03 |
| 49 | GO:0009960: endosperm development | 8.50E-03 |
| 50 | GO:0010305: leaf vascular tissue pattern formation | 8.50E-03 |
| 51 | GO:0048366: leaf development | 1.36E-02 |
| 52 | GO:0009926: auxin polar transport | 2.18E-02 |
| 53 | GO:0000154: rRNA modification | 2.37E-02 |
| 54 | GO:0006260: DNA replication | 2.50E-02 |
| 55 | GO:0009909: regulation of flower development | 2.90E-02 |
| 56 | GO:0006457: protein folding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003723: RNA binding | 2.98E-17 |
| 2 | GO:0000166: nucleotide binding | 4.29E-14 |
| 3 | GO:0008026: ATP-dependent helicase activity | 4.57E-11 |
| 4 | GO:0004004: ATP-dependent RNA helicase activity | 6.95E-08 |
| 5 | GO:0030515: snoRNA binding | 3.27E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 5.13E-07 |
| 7 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 9.88E-05 |
| 8 | GO:0004519: endonuclease activity | 1.11E-04 |
| 9 | GO:0001054: RNA polymerase I activity | 1.48E-04 |
| 10 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.31E-04 |
| 11 | GO:0070181: small ribosomal subunit rRNA binding | 3.86E-04 |
| 12 | GO:0031369: translation initiation factor binding | 1.14E-03 |
| 13 | GO:0043022: ribosome binding | 1.84E-03 |
| 14 | GO:0003729: mRNA binding | 2.07E-03 |
| 15 | GO:0001056: RNA polymerase III activity | 3.57E-03 |
| 16 | GO:0003887: DNA-directed DNA polymerase activity | 4.92E-03 |
| 17 | GO:0043130: ubiquitin binding | 5.28E-03 |
| 18 | GO:0004527: exonuclease activity | 8.50E-03 |
| 19 | GO:0003713: transcription coactivator activity | 8.50E-03 |
| 20 | GO:0003743: translation initiation factor activity | 8.68E-03 |
| 21 | GO:0005524: ATP binding | 1.01E-02 |
| 22 | GO:0008168: methyltransferase activity | 1.11E-02 |
| 23 | GO:0003676: nucleic acid binding | 1.22E-02 |
| 24 | GO:0004721: phosphoprotein phosphatase activity | 1.43E-02 |
| 25 | GO:0005525: GTP binding | 1.48E-02 |
| 26 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.49E-02 |
| 27 | GO:0003746: translation elongation factor activity | 1.82E-02 |
| 28 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.88E-02 |
| 29 | GO:0042393: histone binding | 2.00E-02 |
| 30 | GO:0003924: GTPase activity | 2.11E-02 |
| 31 | GO:0051082: unfolded protein binding | 3.47E-02 |
| 32 | GO:0004386: helicase activity | 3.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0019034: viral replication complex | 0.00E+00 |
| 5 | GO:0070545: PeBoW complex | 0.00E+00 |
| 6 | GO:0030692: Noc4p-Nop14p complex | 0.00E+00 |
| 7 | GO:0005730: nucleolus | 1.32E-30 |
| 8 | GO:0005634: nucleus | 8.14E-17 |
| 9 | GO:0032040: small-subunit processome | 8.90E-13 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.11E-09 |
| 11 | GO:0030687: preribosome, large subunit precursor | 3.27E-07 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 3.50E-05 |
| 13 | GO:0005654: nucleoplasm | 6.45E-05 |
| 14 | GO:0005736: DNA-directed RNA polymerase I complex | 8.74E-05 |
| 15 | GO:0031428: box C/D snoRNP complex | 1.14E-03 |
| 16 | GO:0034399: nuclear periphery | 1.84E-03 |
| 17 | GO:0005666: DNA-directed RNA polymerase III complex | 2.65E-03 |
| 18 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.25E-03 |
| 19 | GO:0043234: protein complex | 4.92E-03 |
| 20 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 7.23E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 9.39E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 1.28E-02 |
| 23 | GO:0005829: cytosol | 1.64E-02 |
| 24 | GO:0015934: large ribosomal subunit | 1.71E-02 |
| 25 | GO:0005743: mitochondrial inner membrane | 1.97E-02 |
| 26 | GO:0016607: nuclear speck | 3.11E-02 |
| 27 | GO:0005618: cell wall | 3.58E-02 |
| 28 | GO:0005759: mitochondrial matrix | 4.78E-02 |